Rroxscaffold_5G00357640

ECERIFERUM 26-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008938
Physical Location & Seq
Forward (+)
37349179 .. 37351823
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00357640.1

Sequence Viewer

Length: 1296 bp
ATGGTTTTAGCCAAGGAAGATGACTTGGTCTATGGCTTCAGGCTTTGCTCGGTTGGGGCGGGGAAGATTACGGAGCCAAATACGGTTCATGAACCAAGTGGCATAGACTTGGCTATGAAGCTCCACTACCTAAGAGGAGTCTACTTCTTCAGTAGTGAGGCAGCCGAAGGGCTAACCGTCTTGAAAATAAAGGAAGTCATGTTCGACTGGTTGTGTGCACACTTTCGGGAAATGGGCCGGTTCCGGAGGTCAGAATCCTCCGGACGGCCGTATGTTAAGTGTAACGACTGTGGGGCGAGGTTCATTGAGGCTCAGTCTGATAAGACCCTTGAAGAATGGTTAGGGATGGACTGGTCTCTCCACAGCAAGCTACTTGTTTCTAACCAAATCATTGGCCCTGAGCTGTTCTTCTCTCCTCCTGTTCTCTTCCAGTGGACCCGTTTTAAGTGCGGAGGAGTGTCAGTAGGGCTTAGCTGGGCCCATGTTCTGGGAGATGCAATAGCTGCTTCAGAGTACTTCCTCAATGGCTTGAGTCGAGCCATGGCTGGTAAGGAGCCTTCTAGGCTACCTTACTCGGAAACATCCAAAACAAATATTCAGAAACGTGAAGGGTCTTCACCACGAGCCCTAAAACAAGTAGAATCGGTTGGTGACCACTGGATCACACCCAATAACCACAAGATGGAAACATTCTCGTTCACCATCACTTCCACCCAGCTAAACAGCTTGAAGCTCAAGTTACTGGGTCAGAATCCAAACCCAGCTGAAGAAATCCCAACTTTCGAGCTCATTTGTGGCGTAATTTGGCAATGTGTAGCCAATGTGAGAGAAGGGTCGGAGCCAAAATTGGTGACAATCTGCAGAAATGGTACTAAACGTGCAGCTCAGGGATATGGCAATTGTCAGATAATATGCACAGTCGAGGCTGCAGATGTTGCGGATGTGGATCCGAAAAGTTTAGCAGCAATGCTGGCTAAGCGTTACGAGAGTGACGAGCAATCCCTCATCGGAGAAGTGGTGGACAGAGATGATGGAGTGTCGGATTATATTGTGTACGGGGCGAACTTGACATTTGTGAACTGGGAAGATGCAGATTTCTATGGGTTTGAAGCTGATGGACATAAGCCAGTTTGTGTGAATTACAGCATACAAGGTGTTGGTGATGAAGGAGCTATTTTGGTTCTGCCAGGGCCAAATGGTGAAGGAAGAGTGGTGAATGTTATTCTGCCAGAAAAAGAAGTTTTGGGGTTGAAAGCTGAGTTGAGAAAGAGTGATCTTATGGTTGAGATCAATTAG

Protein Analysis

431

Amino Acids

47.66

Weight (kDa)

5.24

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 36 - 419 1.8e-30 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 487, 682
AccI GTMKAC 1 cut(s) 141
AccIII TCCGGA 2 cut(s) 243, 260
AciI CCGC 3 cut(s) 59, 450, 938
AclWI GGATC 3 cut(s) 668, 941, 954
AcoI YGGCCR 1 cut(s) 266
AcuI CTGAAG 4 cut(s) 22, 133, 492, 786
AfaI GTAC 3 cut(s) 515, 871, 1055
AfiI CCNNNNNNNGG 3 cut(s) 264, 487, 682
AgsI TTSAA 5 cut(s) 184, 332, 730, 1109, 1252
AjnI CCWGG 1 cut(s) 1186
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
Alw21I GWGCWC 2 cut(s) 220, 789
Alw26I GTCTC 1 cut(s) 360
Alw44I GTGCAC 1 cut(s) 216
AlwI GGATC 3 cut(s) 668, 941, 954
Aor13HI TCCGGA 2 cut(s) 243, 260
AoxI GGCC 5 cut(s) 235, 266, 394, 477, 1190
ApaI GGGCCC 1 cut(s) 481
ApaLI GTGCAC 1 cut(s) 216
ApeKI GCWGC 5 cut(s) 161, 503, 881, 926, 962
AspS9I GGNCC 6 cut(s) 235, 395, 435, 477, 478, 1190
AsuHPI GGTGA 7 cut(s) 609, 662, 691, 862, 1172, 1211, 1225
AvaII GGWCC 1 cut(s) 435
BaeGI GKGCMC 2 cut(s) 220, 481
BamHI GGATCC 1 cut(s) 946
BanII GRGCYC 3 cut(s) 481, 628, 789
BarI GAAGNNNNNNTAC 4 cut(s) 110, 142, 541, 573
BauI CACGAG 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 220, 789
BbvI GCAGC 5 cut(s) 173, 490, 893, 913, 974
BccI CCATC 5 cut(s) 340, 676, 710, 1025, 1109
BceAI ACGGC 2 cut(s) 253, 281
BciT130I CCWGG 1 cut(s) 1188
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 859, 927
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 5 cut(s) 162, 504, 882, 927, 963
BlpI GCTNAGC 2 cut(s) 470, 975
BlsI GCNGC 5 cut(s) 163, 505, 883, 928, 964
BmcAI AGTACT 1 cut(s) 515
Bme1390I CCNGG 1 cut(s) 1188
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 6 cut(s) 235, 395, 435, 477, 478, 1190
BmiI GGNNCC 7 cut(s) 75, 242, 437, 479, 555, 840, 948
BmrFI CCNGG 1 cut(s) 1188
BmrI ACTGGG 2 cut(s) 752, 1090
BmsI GCATC 2 cut(s) 484, 1078
BmuI ACTGGG 2 cut(s) 752, 1090
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 2 cut(s) 399, 885
Bpu1102I GCTNAGC 2 cut(s) 470, 975
BpuEI CTTGAG 2 cut(s) 550, 719
BsaBI GATNNNNATC 1 cut(s) 945
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 12, 540, 1187
BsaWI WCCGGW 2 cut(s) 243, 260
BsaXI ACNNNNNCTCC 4 cut(s) 447, 477, 1002, 1032
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 487, 682
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 7 cut(s) 212, 356, 430, 662, 747, 1085, 1127
Bse3DI GCAATG 2 cut(s) 815, 972
Bse8I GATNNNNATC 1 cut(s) 945
BseAI TCCGGA 2 cut(s) 243, 260
BseBI CCWGG 1 cut(s) 1188
BseDI CCNNGG 3 cut(s) 12, 540, 1187
BseGI GGATG 3 cut(s) 351, 581, 946
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 3 cut(s) 264, 487, 682
BseMI GCAATG 2 cut(s) 815, 972
BseMII CTCAG 4 cut(s) 326, 390, 899, 1248
BseNI ACTGG 7 cut(s) 212, 356, 430, 662, 747, 1085, 1127
BseRI GAGGAG 3 cut(s) 150, 405, 468
BseSI GKGCMC 2 cut(s) 220, 481
BseX3I CGGCCG 1 cut(s) 266
BseXI GCAGC 5 cut(s) 173, 490, 893, 913, 974
BseYI CCCAGC 3 cut(s) 474, 714, 760
BsgI GTGCAG 1 cut(s) 900
Bsh1285I CGRYCG 1 cut(s) 269
BshFI GGCC 5 cut(s) 237, 268, 396, 479, 1192
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 220, 789
BsiSI CCGG 3 cut(s) 238, 244, 261
BslI CCNNNNNNNGG 3 cut(s) 264, 487, 682
BsmAI GTCTC 1 cut(s) 360
BsnI GGCC 5 cut(s) 237, 268, 396, 479, 1192
Bso31I GGTCTC 1 cut(s) 360
Bsp120I GGGCCC 1 cut(s) 477
Bsp1286I GDGCHC 4 cut(s) 220, 481, 628, 789
Bsp13I TCCGGA 2 cut(s) 243, 260
Bsp143I GATC 4 cut(s) 660, 946, 1273, 1287
Bsp1720I GCTNAGC 2 cut(s) 470, 975
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 3 cut(s) 59, 450, 938
BspANI GGCC 5 cut(s) 237, 268, 396, 479, 1192
BspCNI CTCAG 4 cut(s) 325, 391, 898, 1249
BspEI TCCGGA 2 cut(s) 243, 260
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 7 cut(s) 75, 242, 437, 479, 555, 840, 948
BspMAI CTGCAG 2 cut(s) 863, 931
BspPI GGATC 3 cut(s) 668, 941, 954
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 2 cut(s) 815, 972
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 7 cut(s) 212, 356, 430, 662, 747, 1085, 1127
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 12, 540, 1187
BssMI GATC 4 cut(s) 660, 946, 1273, 1287
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 12, 540
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 1188
Bst4CI ACNGT 4 cut(s) 85, 178, 290, 919
Bst6I CTCTTC 2 cut(s) 431, 1201
BstAPI GCANNNNNTGC 2 cut(s) 503, 935
BstC8I GCNNGC 2 cut(s) 368, 972
BstDEI CTNAG 7 cut(s) 131, 312, 399, 470, 885, 975, 1257
BstDSI CCRYGG 1 cut(s) 540
BstEII GGTNACC 1 cut(s) 650
BstF5I GGATG 3 cut(s) 351, 581, 946
BstKTI GATC 4 cut(s) 663, 949, 1276, 1290
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 4 cut(s) 660, 946, 1273, 1287
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 5 cut(s) 503, 562, 935, 971, 976
BstNI CCWGG 1 cut(s) 1188
BstPI GGTNACC 1 cut(s) 650
BstSCI CCNGG 1 cut(s) 1186
BstSFI CTRYAG 2 cut(s) 859, 927
BstSLI GKGCMC 2 cut(s) 220, 481
BstV1I GCAGC 5 cut(s) 173, 490, 893, 913, 974
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 946
BstXI CCANNNNNNTGG 1 cut(s) 392
BstYI RGATCY 1 cut(s) 946
BstZI CGGCCG 1 cut(s) 266
BsuRI GGCC 5 cut(s) 237, 268, 396, 479, 1192
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 3 cut(s) 351, 581, 946
BtsIMutI CAGTG 2 cut(s) 437, 655
Cac8I GCNNGC 2 cut(s) 368, 972
CciI TCATGA 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 6 cut(s) 235, 395, 435, 477, 478, 1190
Csp6I GTAC 3 cut(s) 514, 870, 1054
CviAII CATG 4 cut(s) 89, 199, 482, 541
CviQI GTAC 3 cut(s) 514, 870, 1054
DdeI CTNAG 7 cut(s) 131, 312, 399, 470, 885, 975, 1257
DpnI GATC 4 cut(s) 662, 948, 1275, 1289
DpnII GATC 4 cut(s) 660, 946, 1273, 1287
EaeI YGGCCR 1 cut(s) 266
EagI CGGCCG 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 431, 1201
EarI CTCTTC 2 cut(s) 431, 1201
Ecl136II GAGCTC 1 cut(s) 787
EclXI CGGCCG 1 cut(s) 266
Eco130I CCWWGG 2 cut(s) 12, 540
Eco24I GRGCYC 3 cut(s) 481, 628, 789
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 1 cut(s) 435
Eco52I CGGCCG 1 cut(s) 266
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 4 cut(s) 22, 133, 492, 786
Eco91I GGTNACC 1 cut(s) 650
EcoICRI GAGCTC 1 cut(s) 787
EcoO65I GGTNACC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 12, 540
EcoT38I GRGCYC 3 cut(s) 481, 628, 789
ErhI CCWWGG 2 cut(s) 12, 540
FaeI CATG 4 cut(s) 92, 202, 485, 544
FatI CATG 4 cut(s) 88, 198, 481, 540
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 5 cut(s) 162, 504, 882, 927, 963
FokI GGATG 3 cut(s) 358, 568, 953
FriOI GRGCYC 3 cut(s) 481, 628, 789
Fsp4HI GCNGC 5 cut(s) 162, 504, 882, 927, 963
FspBI CTAG 1 cut(s) 561
GluI GCNGC 5 cut(s) 162, 504, 882, 927, 963
GsaI CCCAGC 3 cut(s) 478, 718, 764
HaeIII GGCC 5 cut(s) 237, 268, 396, 479, 1192
HapII CCGG 3 cut(s) 238, 244, 261
Hin1II CATG 4 cut(s) 92, 202, 485, 544
HinfI GANTC 5 cut(s) 138, 254, 532, 641, 751
HpaII CCGG 3 cut(s) 238, 244, 261
HphI GGTGA 7 cut(s) 609, 662, 691, 862, 1172, 1211, 1225
Hpy166II GTNNAC 7 cut(s) 142, 218, 435, 699, 1021, 1054, 1078
Hpy188III TCNNGA 5 cut(s) 89, 181, 227, 244, 261
Hpy8I GTNNAC 7 cut(s) 142, 218, 435, 699, 1021, 1054, 1078
HpyAV CCTTC 6 cut(s) 161, 567, 602, 824, 1160, 1196
HpyCH4III ACNGT 4 cut(s) 85, 178, 290, 919
HpyCH4IV ACGT 2 cut(s) 604, 877
HpyCH4V TGCA 7 cut(s) 218, 497, 861, 881, 915, 929, 1091
HpyF10VI GCNNNNNNNGC 5 cut(s) 503, 562, 935, 971, 976
HpyF3I CTNAG 7 cut(s) 131, 312, 399, 470, 885, 975, 1257
HpySE526I ACGT 2 cut(s) 604, 877
Hsp92II CATG 4 cut(s) 92, 202, 485, 544
Kpn2I TCCGGA 2 cut(s) 243, 260
Kzo9I GATC 4 cut(s) 660, 946, 1273, 1287
LmnI GCTCC 5 cut(s) 73, 126, 553, 838, 1169
Lsp1109I GCAGC 5 cut(s) 173, 490, 893, 913, 974
LweI GCATC 2 cut(s) 484, 1078
MaeI CTAG 1 cut(s) 561
MaeII ACGT 2 cut(s) 604, 877
MaeIII GTNAC 6 cut(s) 281, 650, 738, 850, 980, 989
MalI GATC 4 cut(s) 662, 948, 1275, 1289
MboI GATC 4 cut(s) 660, 946, 1273, 1287
MfeI CAATTG 1 cut(s) 898
MflI RGATCY 1 cut(s) 946
MhlI GDGCHC 4 cut(s) 220, 481, 628, 789
MluCI AATT 5 cut(s) 801, 845, 898, 1138, 1291
MlyI GAGTC 2 cut(s) 147, 541
MmeI TCCRAC 2 cut(s) 816, 1020
MroI TCCGGA 2 cut(s) 243, 260
MseI TTAA 2 cut(s) 276, 444
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 3 cut(s) 238, 244, 261
MspR9I CCNGG 1 cut(s) 1188
MunI CAATTG 1 cut(s) 898
MvaI CCWGG 1 cut(s) 1188
MwoI GCNNNNNNNGC 5 cut(s) 503, 562, 935, 971, 976
NcoI CCATGG 1 cut(s) 540
NdeII GATC 4 cut(s) 660, 946, 1273, 1287
NlaIII CATG 4 cut(s) 92, 202, 485, 544
NlaIV GGNNCC 7 cut(s) 75, 242, 437, 479, 555, 840, 948
NmuCI GTSAC 3 cut(s) 650, 850, 989
PagI TCATGA 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PfeI GAWTC 3 cut(s) 254, 641, 751
PflFI GACNNNGTC 1 cut(s) 26
PflMI CCANNNNNTGG 2 cut(s) 487, 682
PkrI GCNGC 5 cut(s) 163, 505, 883, 928, 964
PleI GAGTC 2 cut(s) 146, 540
PpsI GAGTC 2 cut(s) 146, 540
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 1186
PspEI GGTNACC 1 cut(s) 650
PspFI CCCAGC 3 cut(s) 474, 714, 760
PspGI CCWGG 1 cut(s) 1186
PspN4I GGNNCC 7 cut(s) 75, 242, 437, 479, 555, 840, 948
PspOMI GGGCCC 1 cut(s) 477
PspPI GGNCC 6 cut(s) 235, 395, 435, 477, 478, 1190
PstI CTGCAG 2 cut(s) 863, 931
PsuI RGATCY 1 cut(s) 946
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 764
RsaI GTAC 3 cut(s) 515, 871, 1055
RsaNI GTAC 3 cut(s) 514, 870, 1054
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 2 cut(s) 276, 444
SatI GCNGC 5 cut(s) 162, 504, 882, 927, 963
Sau3AI GATC 4 cut(s) 660, 946, 1273, 1287
Sau96I GGNCC 6 cut(s) 235, 395, 435, 477, 478, 1190
ScaI AGTACT 1 cut(s) 515
SchI GAGTC 2 cut(s) 147, 541
ScrFI CCNGG 1 cut(s) 1188
SduI GDGCHC 4 cut(s) 220, 481, 628, 789
SfaNI GCATC 2 cut(s) 484, 1078
SfcI CTRYAG 2 cut(s) 859, 927
SinI GGWCC 1 cut(s) 435
SmlI CTYRAG 2 cut(s) 529, 734
SmoI CTYRAG 2 cut(s) 529, 734
Sse9I AATT 5 cut(s) 801, 845, 898, 1138, 1291
SsiI CCGC 3 cut(s) 59, 450, 938
SspI AATATT 1 cut(s) 595
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 1186
StyI CCWWGG 2 cut(s) 12, 540
TaaI ACNGT 4 cut(s) 85, 178, 290, 919
TaiI ACGT 2 cut(s) 607, 880
TaqI TCGA 4 cut(s) 204, 535, 783, 921
TasI AATT 5 cut(s) 801, 845, 898, 1138, 1291
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 3 cut(s) 254, 641, 751
Tru1I TTAA 2 cut(s) 276, 444
Tru9I TTAA 2 cut(s) 276, 444
TscAI CASTG 2 cut(s) 437, 662
TseFI GTSAC 3 cut(s) 650, 850, 989
TseI GCWGC 5 cut(s) 161, 503, 881, 926, 962
Tsp45I GTSAC 3 cut(s) 650, 850, 989
TspDTI ATGAA 5 cut(s) 77, 105, 131, 292, 1179
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 437, 662
Tth111I GACNNNGTC 1 cut(s) 26
Van91I CCANNNNNTGG 2 cut(s) 487, 682
VneI GTGCAC 1 cut(s) 216
VpaK11BI GGWCC 1 cut(s) 435
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.