Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Reverse (-)

19391094 .. 19391549

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0122700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTGTTTAATTAAGAGGAACGCTAACCGAAGACCAATAGAGCTCAGGTTCCCATCTGAAACATGCTATAAATACTGGGCAGTAATGCACAAACCTTCCTACAGTCGCCAGCCTTCCCTATTCAGTGCAGTATTTACATCACTCTGTAGAGAAAAGTTCAAGTCCTTGAGCCACAAGCCCACAATGTCGTGGTTTCGTAAGTTTGTTGCGGTTACAATGTCGTGGTTTCGGAAGTTTGTTGCCGTTACAATGTCGTGGTTTCGGAAGTTTGTTGCGGTTACAATGTCGTGGTTTCAGAAGTTTGTTCCGGTTTTCCTTTCGAATGCACCAATTGTTTCAACAATTCTTGTAGTGCTCAGAAAGGTCGTACCGCTTCTTGCACCAGCTGTTGCCGCTGCCGGTGCTGTTCTCCAAATCACGGTGCTGTTAATTAATATTGTATCTCTAATGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

151

Amino Acids

17.41

Weight (kDa)

11.09

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	209, 275, 371, 393
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	2 cut(s)	160, 339
AluBI	AGCT	2 cut(s)	43, 386
AluI	AGCT	2 cut(s)	43, 386
Alw21I	GWGCWC	2 cut(s)	45, 357
ApeKI	GCWGC	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	432
AsuII	TTCGAA	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	37
Bbv12I	GWGCWC	2 cut(s)	45, 357
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	100, 145
BisI	GCNGC	2 cut(s)	393, 396
BlsI	GCNGC	2 cut(s)	394, 397
BmiI	GGNNCC	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	187
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse118I	RCCGGY	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	58, 370
BseNI	ACTGG	1 cut(s)	80
BseXI	GCAGC	1 cut(s)	382
BsgI	GTGCAG	1 cut(s)	147
BsiHKAI	GWGCWC	2 cut(s)	45, 357
BsiSI	CCGG	2 cut(s)	308, 399
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	328
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	45, 357
BspACI	CCGC	4 cut(s)	209, 275, 371, 393
BspCNI	CTCAG	2 cut(s)	57, 369
BspLI	GGNNCC	1 cut(s)	50
BspT104I	TTCGAA	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	104, 421
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	2 cut(s)	44, 356
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 401
BstNSI	RCATGY	1 cut(s)	66
BstSFI	CTRYAG	2 cut(s)	100, 145
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	398
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	1 cut(s)	63
CviJI	RGCY	5 cut(s)	43, 112, 171, 178, 386
CviKI_1	RGCY	5 cut(s)	43, 112, 171, 178, 386
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	44, 356
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	1 cut(s)	66
FaiI	YATR	2 cut(s)	64, 69
FatI	CATG	1 cut(s)	62
Fnu4HI	GCNGC	2 cut(s)	393, 396
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	2 cut(s)	393, 396
GluI	GCNGC	2 cut(s)	393, 396
HapII	CCGG	2 cut(s)	308, 399
Hin1II	CATG	1 cut(s)	66
HpaII	CCGG	2 cut(s)	308, 399
Hpy188I	TCNGA	5 cut(s)	58, 231, 264, 297, 359
HpyAV	CCTTC	2 cut(s)	105, 123
HpyCH4III	ACNGT	2 cut(s)	104, 421
HpyCH4V	TGCA	4 cut(s)	88, 128, 326, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 401
HpyF3I	CTNAG	2 cut(s)	44, 356
Hsp92II	CATG	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	31, 61, 122, 321, 396, 412
Lsp1109I	GCAGC	1 cut(s)	382
MaeIII	GTNAC	3 cut(s)	211, 244, 277
MboII	GAAGA	1 cut(s)	42
MfeI	CAATTG	1 cut(s)	330
MhlI	GDGCHC	2 cut(s)	45, 357
MluCI	AATT	4 cut(s)	9, 330, 342, 429
MnlI	CCTC	1 cut(s)	9
MseI	TTAA	4 cut(s)	8, 12, 428, 432
MspA1I	CMGCKG	2 cut(s)	386, 395
MspI	CCGG	2 cut(s)	308, 399
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	392, 401
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	320
PacI	TTAATTAA	2 cut(s)	12, 432
PctI	GAATGC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	394, 397
PshBI	ATTAAT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	4 cut(s)	8, 12, 428, 432
SatI	GCNGC	2 cut(s)	393, 396
SduI	GDGCHC	2 cut(s)	45, 357
SetI	ASST	5 cut(s)	45, 50, 97, 366, 388
SfcI	CTRYAG	2 cut(s)	100, 145
SfuI	TTCGAA	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
Sse9I	AATT	4 cut(s)	9, 330, 342, 429
SsiI	CCGC	4 cut(s)	209, 275, 371, 393
SspI	AATATT	1 cut(s)	436
SstI	GAGCTC	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	104, 421
TaqI	TCGA	1 cut(s)	320
TasI	AATT	4 cut(s)	9, 330, 342, 429
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	4 cut(s)	8, 12, 428, 432
Tru9I	TTAA	4 cut(s)	8, 12, 428, 432
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	1 cut(s)	395
TspRI	CASTG	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	432
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.