Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Reverse (-)

1149312 .. 1151853

Gene Structure 2542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTTATGTGTCAGCTACCAGACATGCGGCCGGTTTCGGATCGATCCGAATCCGGCCGGCCCTATCTGAAGTGTAACGATTGCGGTGCGAGGTATATTGAAGCGCAGTGTGATAAAACCATCGATGAATGGCTAGGGTTGGACTGCTCTCTTCAGAAGCTGCTTGCTTCTAACCAAATCATTGGCCCTGAACTATTCTTCTCTCCAGTTGTTCTCTTCCAGGTTACTTATTTCAAATGTGGAGGAATGTCAATAGGCCTCAGCTGGTCTCATGTCCTCGGAGATGCATTTGCAGCATCAGATTTCATCAACGGCTTAGGGCAAGTCATGTCTGGCCTGGAGCCCAGCAGGCTACCAAATTATGCAAAACCGAACACAACTGTTCAACAAAAACTTGCAAACAATCCATCACCACCACCACTCTCCATCAGACACGTGGACTCGGTTGGTGACTATTGGATAAGTCCCAATAAATGCAAGATGGAAACATTCTCGTTCCCTGTAACTGCCACGCAGCTAAACAACTTGCAAGTCAAGATATTAGGTCCAATTCAAAGTGACCAAATTCCAATTTTTGAACTTATTTGTGCCCTAATTTGGAAATGCATAGCCACAGTTAGAGAAGGGCCACAACCGAAATTGGTGACAATTTGCAAAAACAACACAAATAAGAGAACAAAAGGTGAATACAGCAACAGTCAGACTATAAGCACAGTTGAGGCAGATTTTAGGGTTTCGGATATGGATCCGAAAGAACTAGTAAACTTGCTAGCCAAGCAAGCCGGCGAGAACGAGAAAACACGAATCGAAGAGGCCATGGAGAATGAGAATGGAGTAGCTGATTTTGTTGTGTATGGAGCCAACTTGACGTTTGTGAACTGGGAAGATGTCGATTTTTATGGGTTGGAAGTGAAGGGACATAAGCCGGTTTGCGTGCATTATAACATACAAGGTGTTGGTGATGAAGGAGCTGTTTTGTTGCTGCCTGCTGGGGCTAAAGAGTTTGGTGATGGAGGAAGAGTGGTGAGTGTTATTCTGCCAGAGAAAGAAGTGTTTGGGGTCAAATCTGAGTTGAGGAAAAATGATCTGCTGTTTGGTAATGAGCTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

371

Amino Acids

40.88

Weight (kDa)

5.05

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	15 - 357	6.4e-29	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
AciI	CCGC	2 cut(s)	28, 84
AclWI	GGATC	4 cut(s)	39, 48, 740, 753
AcoI	YGGCCR	2 cut(s)	29, 55
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	89, 137
AcvI	CACGTG	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	597
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	101, 235, 386, 554, 578
AhlI	ACTAGT	1 cut(s)	757
AjnI	CCWGG	2 cut(s)	219, 336
AluBI	AGCT	7 cut(s)	16, 160, 264, 517, 839, 971, 1105
AluI	AGCT	7 cut(s)	16, 160, 264, 517, 839, 971, 1105
Alw21I	GWGCWC	1 cut(s)	1107
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	4 cut(s)	39, 48, 740, 753
AlwNI	CAGNNNCTG	1 cut(s)	160
AoxI	GGCC	8 cut(s)	29, 55, 59, 184, 256, 334, 626, 813
ApeKI	GCWGC	4 cut(s)	160, 293, 514, 982
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	4 cut(s)	60, 185, 545, 626
AsuHPI	GGTGA	7 cut(s)	402, 461, 655, 695, 971, 1019, 1036
AsuNHI	GCTAGC	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	545
BaeGI	GKGCMC	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	745
BanII	GRGCYC	2 cut(s)	345, 1107
BbrPI	CACGTG	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	1107
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	4 cut(s)	147, 305, 526, 969
BccI	CCATC	5 cut(s)	128, 415, 434, 475, 1004
BceAI	ACGGC	1 cut(s)	328
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	221, 338
BcoDI	GTCTC	1 cut(s)	273
BcuI	ACTAGT	1 cut(s)	757
BfaI	CTAG	3 cut(s)	134, 758, 770
BglI	GCCNNNNNGGC	1 cut(s)	349
BisI	GCNGC	5 cut(s)	29, 161, 294, 515, 983
BlsI	GCNGC	5 cut(s)	30, 162, 295, 516, 984
Bme1390I	CCNGG	2 cut(s)	221, 338
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	4 cut(s)	60, 185, 545, 626
BmiI	GGNNCC	3 cut(s)	342, 747, 859
BmrFI	CCNGG	2 cut(s)	221, 338
BmrI	ACTGGG	1 cut(s)	889
BmsI	GCATC	2 cut(s)	274, 305
BmtI	GCTAGC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	889
BpmI	CTGGAG	2 cut(s)	189, 359
Bpu10I	CCTNAGC	2 cut(s)	260, 316
Bsa29I	ATCGAT	2 cut(s)	43, 123
BsaAI	YACGTR	1 cut(s)	436
BsaBI	GATNNNNATC	2 cut(s)	49, 744
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	277, 816
BsaXI	ACNNNNNCTCC	2 cut(s)	1005, 1035
Bsc4I	CCNNNNNNNGG	1 cut(s)	597
Bse118I	RCCGGY	4 cut(s)	31, 57, 782, 925
Bse1I	ACTGG	2 cut(s)	206, 884
Bse8I	GATNNNNATC	2 cut(s)	49, 744
BseBI	CCWGG	2 cut(s)	221, 338
BseCI	ATCGAT	2 cut(s)	43, 123
BseDI	CCNNGG	2 cut(s)	277, 816
BseJI	GATNNNNATC	2 cut(s)	49, 744
BseLI	CCNNNNNNNGG	1 cut(s)	597
BseMII	CTCAG	2 cut(s)	274, 1059
BseNI	ACTGG	2 cut(s)	206, 884
BseSI	GKGCMC	1 cut(s)	592
BseX3I	CGGCCG	2 cut(s)	29, 55
BseXI	GCAGC	4 cut(s)	147, 305, 526, 969
BseYI	CCCAGC	2 cut(s)	344, 989
Bsh1285I	CGRYCG	2 cut(s)	32, 58
BshFI	GGCC	8 cut(s)	31, 57, 61, 186, 258, 336, 628, 815
BshVI	ATCGAT	2 cut(s)	43, 123
BsiEI	CGRYCG	2 cut(s)	32, 58
BsiHKAI	GWGCWC	1 cut(s)	1107
BsiSI	CCGG	5 cut(s)	32, 54, 58, 783, 926
BslFI	GGGAC	2 cut(s)	450, 930
BslI	CCNNNNNNNGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	2 cut(s)	450, 930
BsnI	GGCC	8 cut(s)	31, 57, 61, 186, 258, 336, 628, 815
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	345, 592, 1107
Bsp143I	GATC	4 cut(s)	40, 44, 745, 1084
Bsp19I	CCATGG	1 cut(s)	816
BspACI	CCGC	2 cut(s)	28, 84
BspANI	GGCC	8 cut(s)	31, 57, 61, 186, 258, 336, 628, 815
BspCNI	CTCAG	2 cut(s)	273, 1060
BspDI	ATCGAT	2 cut(s)	43, 123
BspLI	GGNNCC	3 cut(s)	342, 747, 859
BspOI	GCTAGC	1 cut(s)	773
BspPI	GGATC	4 cut(s)	39, 48, 740, 753
BspTNI	GGTCTC	1 cut(s)	273
BsrFI	RCCGGY	4 cut(s)	31, 57, 782, 925
BsrI	ACTGG	2 cut(s)	206, 884
BssAI	RCCGGY	4 cut(s)	31, 57, 782, 925
BssECI	CCNNGG	2 cut(s)	277, 816
BssMI	GATC	4 cut(s)	40, 44, 745, 1084
BssT1I	CCWWGG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	221, 338
Bst4CI	ACNGT	4 cut(s)	382, 616, 698, 715
Bst6I	CTCTTC	4 cut(s)	156, 221, 804, 1012
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	8 cut(s)	59, 165, 350, 771, 780, 784, 935, 987
BstDEI	CTNAG	3 cut(s)	260, 316, 1068
BstDSI	CCRYGG	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	4 cut(s)	43, 47, 748, 1087
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	40, 44, 745, 1084
BstMCI	CGRYCG	2 cut(s)	32, 58
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 349, 775, 779
BstNI	CCWGG	2 cut(s)	221, 338
BstNSI	RCATGY	1 cut(s)	28
BstSCI	CCNGG	2 cut(s)	219, 336
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	4 cut(s)	147, 305, 526, 969
BstX2I	RGATCY	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	745
BstZI	CGGCCG	2 cut(s)	29, 55
Bsu15I	ATCGAT	2 cut(s)	43, 123
BsuRI	GGCC	8 cut(s)	31, 57, 61, 186, 258, 336, 628, 815
BsuTUI	ATCGAT	2 cut(s)	43, 123
BtgI	CCRYGG	1 cut(s)	816
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	8 cut(s)	59, 165, 350, 771, 780, 784, 935, 987
CaiI	CAGNNNCTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	4 cut(s)	31, 57, 782, 925
Cfr13I	GGNCC	4 cut(s)	60, 185, 545, 626
ClaI	ATCGAT	2 cut(s)	43, 123
CviAII	CATG	4 cut(s)	25, 272, 328, 817
DdeI	CTNAG	3 cut(s)	260, 316, 1068
DpnI	GATC	4 cut(s)	42, 46, 747, 1086
DpnII	GATC	4 cut(s)	40, 44, 745, 1084
EaeI	YGGCCR	2 cut(s)	29, 55
EagI	CGGCCG	2 cut(s)	29, 55
Eam1104I	CTCTTC	4 cut(s)	156, 221, 804, 1012
EarI	CTCTTC	4 cut(s)	156, 221, 804, 1012
Ecl136II	GAGCTC	1 cut(s)	1105
EclXI	CGGCCG	2 cut(s)	29, 55
Eco130I	CCWWGG	1 cut(s)	816
Eco147I	AGGCCT	1 cut(s)	258
Eco24I	GRGCYC	2 cut(s)	345, 1107
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	545
Eco52I	CGGCCG	2 cut(s)	29, 55
Eco53kI	GAGCTC	1 cut(s)	1105
Eco57I	CTGAAG	2 cut(s)	89, 137
Eco72I	CACGTG	1 cut(s)	436
EcoICRI	GAGCTC	1 cut(s)	1105
EcoRII	CCWGG	2 cut(s)	219, 336
EcoT14I	CCWWGG	1 cut(s)	816
EcoT22I	ATGCAT	2 cut(s)	289, 608
EcoT38I	GRGCYC	2 cut(s)	345, 1107
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	4 cut(s)	28, 275, 331, 820
FaqI	GGGAC	2 cut(s)	450, 930
FatI	CATG	4 cut(s)	24, 271, 327, 816
Fnu4HI	GCNGC	5 cut(s)	29, 161, 294, 515, 983
FriOI	GRGCYC	2 cut(s)	345, 1107
FseI	GGCCGGCC	1 cut(s)	61
Fsp4HI	GCNGC	5 cut(s)	29, 161, 294, 515, 983
FspBI	CTAG	3 cut(s)	134, 758, 770
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	5 cut(s)	29, 161, 294, 515, 983
GsaI	CCCAGC	2 cut(s)	348, 993
GsuI	CTGGAG	2 cut(s)	189, 359
HaeIII	GGCC	8 cut(s)	31, 57, 61, 186, 258, 336, 628, 815
HapII	CCGG	5 cut(s)	32, 54, 58, 783, 926
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	4 cut(s)	28, 275, 331, 820
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	50, 440, 804
HpaII	CCGG	5 cut(s)	32, 54, 58, 783, 926
HphI	GGTGA	7 cut(s)	402, 461, 655, 695, 971, 1019, 1036
Hpy166II	GTNNAC	3 cut(s)	439, 763, 877
Hpy188III	TCNNGA	1 cut(s)	535
Hpy8I	GTNNAC	3 cut(s)	439, 763, 877
HpyAV	CCTTC	3 cut(s)	617, 907, 959
HpyCH4III	ACNGT	4 cut(s)	382, 616, 698, 715
HpyCH4IV	ACGT	2 cut(s)	435, 869
HpyCH4V	TGCA	9 cut(s)	287, 293, 365, 398, 477, 529, 606, 654, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 349, 775, 779
HpyF3I	CTNAG	3 cut(s)	260, 316, 1068
HpySE526I	ACGT	2 cut(s)	435, 869
Hsp92II	CATG	4 cut(s)	28, 275, 331, 820
HspAI	GCGC	1 cut(s)	104
KroI	GCCGGC	2 cut(s)	57, 782
KroNI	GCCGGC	2 cut(s)	59, 784
Kzo9I	GATC	4 cut(s)	40, 44, 745, 1084
LmnI	GCTCC	3 cut(s)	340, 857, 968
Lsp1109I	GCAGC	4 cut(s)	147, 305, 526, 969
LweI	GCATC	2 cut(s)	274, 305
MaeI	CTAG	3 cut(s)	134, 758, 770
MaeII	ACGT	2 cut(s)	435, 869
MaeIII	GTNAC	6 cut(s)	74, 223, 449, 502, 557, 643
MalI	GATC	4 cut(s)	42, 46, 747, 1086
MboI	GATC	4 cut(s)	40, 44, 745, 1084
MboII	GAAGA	6 cut(s)	143, 190, 208, 821, 896, 1029
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	3 cut(s)	345, 592, 1107
MluCI	AATT	7 cut(s)	358, 549, 564, 570, 594, 638, 648
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	2 cut(s)	120, 885
MnlI	CCTC	8 cut(s)	84, 236, 269, 287, 712, 805, 1007, 1068
Mph1103I	ATGCAT	2 cut(s)	289, 608
MroNI	GCCGGC	2 cut(s)	57, 782
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	5 cut(s)	32, 54, 58, 783, 926
MspR9I	CCNGG	2 cut(s)	221, 338
MvaI	CCWGG	2 cut(s)	221, 338
MwoI	GCNNNNNNNGC	4 cut(s)	293, 349, 775, 779
NaeI	GCCGGC	2 cut(s)	59, 784
NcoI	CCATGG	1 cut(s)	816
NdeII	GATC	4 cut(s)	40, 44, 745, 1084
NgoMIV	GCCGGC	2 cut(s)	57, 782
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	4 cut(s)	28, 275, 331, 820
NlaIV	GGNNCC	3 cut(s)	342, 747, 859
NmuCI	GTSAC	3 cut(s)	449, 557, 643
NsiI	ATGCAT	2 cut(s)	289, 608
NspI	RCATGY	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	258
PdiI	GCCGGC	2 cut(s)	59, 784
PfeI	GAWTC	2 cut(s)	50, 804
PkrI	GCNGC	5 cut(s)	30, 162, 295, 516, 984
PleI	GAGTC	1 cut(s)	434
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	434
Ppu21I	YACGTR	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	1107
Psp6I	CCWGG	2 cut(s)	219, 336
PspCI	CACGTG	1 cut(s)	436
PspFI	CCCAGC	2 cut(s)	344, 989
PspGI	CCWGG	2 cut(s)	219, 336
PspN4I	GGNNCC	3 cut(s)	342, 747, 859
PspPI	GGNCC	4 cut(s)	60, 185, 545, 626
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	264
RigI	GGCCGGCC	1 cut(s)	61
SacI	GAGCTC	1 cut(s)	1107
SatI	GCNGC	5 cut(s)	29, 161, 294, 515, 983
Sau3AI	GATC	4 cut(s)	40, 44, 745, 1084
Sau96I	GGNCC	4 cut(s)	60, 185, 545, 626
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	2 cut(s)	221, 338
SduI	GDGCHC	3 cut(s)	345, 592, 1107
SfaNI	GCATC	2 cut(s)	274, 305
SinI	GGWCC	1 cut(s)	545
SpeI	ACTAGT	1 cut(s)	757
Sse9I	AATT	7 cut(s)	358, 549, 564, 570, 594, 638, 648
SseBI	AGGCCT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	28, 84
SspMI	CTAG	3 cut(s)	134, 758, 770
SstI	GAGCTC	1 cut(s)	1107
StuI	AGGCCT	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	219, 336
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	4 cut(s)	382, 616, 698, 715
TaiI	ACGT	2 cut(s)	438, 872
TaqI	TCGA	5 cut(s)	43, 123, 807, 891, 1107
TasI	AATT	7 cut(s)	358, 549, 564, 570, 594, 638, 648
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	2 cut(s)	50, 804
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	3 cut(s)	449, 557, 643
TseI	GCWGC	4 cut(s)	160, 293, 514, 982
Tsp45I	GTSAC	3 cut(s)	449, 557, 643
TspDTI	ATGAA	3 cut(s)	141, 295, 978
TspRI	CASTG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	545
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	28
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XspI	CTAG	3 cut(s)	134, 758, 770
Zsp2I	ATGCAT	2 cut(s)	289, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.