Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033890.1

Orthogroup ID

OG0008938

Physical Location & Seq

Genomic Coordinates Forward (+)

17556 .. 18005

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033890.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggttttagccaaggaagataacttggtctatggcttcaagctttcctcggttggggcggggaagattacggagccaaatacggttcatgaaccaagtggcatagacttggctatgaagctccactacctaagaggagtctacttcttcagtagtgaggcagccgaagggctaaccgtcttgaacataaaggaagtcatgttcgactggttgtgtgcacactttcgggaaatgggccggtttcggaggtcagaatcctccgggcggccgtatgttaagtgtaacgactgtggggcgaggttcattgaggctcagtctgataagacccttgaagaatggttagggatggactggtctctccacaagctacttgtttctaaccaaatcattggccctgagctgttcttctctcctcctgttctcttccaggtacttacgttttatgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000038 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009555 GO:0009579 GO:0009987 GO:0010025 GO:0010166 GO:0016020 GO:0016053 GO:0019752 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0034357 GO:0042651 GO:0042761 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048229 GO:0048856 GO:0055035 GO:0071704 GO:0072330 GO:1901568 GO:1901570 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

149

Amino Acids

16.96

Weight (kDa)

5.79

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23840 AT4G13840
fragaria_vesca	FvH4_4g13360
malus_domestica	MD04G1016700.v1.1 MD04G1016900.v1.1
prunus_persica	Prupe.1G163500_v2.0.a1
pyrus_communis	pycom04g01280 pycom04g01300
rosa_chinensis	RchiOBHm_Chr4g0413701
rosa_laevigata	RLG00000008200
rosa_multiflora	Rmu_co8063286.1_g000001 Rmu_co8298563.1_g000001 Rmu_sc0004133.1_g000007 Rmu_sc0033890.1_g000002
rosa_roxburghii	Rroxscaffold_5G00357640
rosa_rugosa	Rorug04G0122700
rosa_samantha	Rh4AG181900 Rh4BG181000 Rh4BG181100 Rh4CG193100 Rh4DG177500
rosa_wichuraiana	Rw4G015220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	2 cut(s)	59, 265
AcoI	YGGCCR	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	2 cut(s)	54, 264
AgsI	TTSAA	3 cut(s)	40, 184, 332
AjnI	CCWGG	1 cut(s)	426
AloI	GAACNNNNNNTCC	2 cut(s)	185, 217
AluBI	AGCT	4 cut(s)	43, 121, 367, 400
AluI	AGCT	4 cut(s)	43, 121, 367, 400
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	360
Alw44I	GTGCAC	1 cut(s)	216
AoxI	GGCC	3 cut(s)	235, 266, 391
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	235, 392
AsuC2I	CCSGG	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	220
BaeI	ACNNNNGTAYC	1 cut(s)	422
BarI	GAAGNNNNNNTAC	2 cut(s)	110, 142
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	162, 266
BlsI	GCNGC	2 cut(s)	163, 267
Bme1390I	CCNGG	2 cut(s)	262, 428
BmgT120I	GGNCC	2 cut(s)	235, 392
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	262, 428
Bpu10I	CCTNAGC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	262
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	12, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 264
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	212, 356
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	12, 48
BseGI	GGATG	1 cut(s)	351
BseLI	CCNNNNNNNGG	2 cut(s)	54, 264
BseMII	CTCAG	2 cut(s)	326, 387
BseNI	ACTGG	2 cut(s)	212, 356
BseRI	GAGGAG	2 cut(s)	150, 402
BseSI	GKGCMC	1 cut(s)	220
BseX3I	CGGCCG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	173
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	237, 268, 393
BsiEI	CGRYCG	1 cut(s)	269
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	238, 261
BslI	CCNNNNNNNGG	2 cut(s)	54, 264
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	3 cut(s)	237, 268, 393
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	220
BspACI	CCGC	2 cut(s)	59, 265
BspANI	GGCC	3 cut(s)	237, 268, 393
BspCNI	CTCAG	2 cut(s)	325, 388
BspHI	TCATGA	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	75
BspTNI	GGTCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	212, 356
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	12, 48
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	85, 178, 290
Bst6I	CTCTTC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	131, 312, 396
BstF5I	GGATG	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	360
BstMCI	CGRYCG	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	2 cut(s)	260, 426
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	173
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstZI	CGGCCG	1 cut(s)	266
BsuRI	GGCC	3 cut(s)	237, 268, 393
BtsCI	GGATG	1 cut(s)	351
CciI	TCATGA	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	235, 392
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	2 cut(s)	89, 199
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	3 cut(s)	131, 312, 396
EaeI	YGGCCR	1 cut(s)	266
EagI	CGGCCG	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
EclXI	CGGCCG	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	12
Eco31I	GGTCTC	1 cut(s)	360
Eco52I	CGGCCG	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	92, 202
FaiI	YATR	8 cut(s)	33, 90, 104, 116, 188, 200, 273, 444
FatI	CATG	2 cut(s)	88, 198
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	162, 266
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	162, 266
GluI	GCNGC	2 cut(s)	162, 266
HaeIII	GGCC	3 cut(s)	237, 268, 393
HapII	CCGG	2 cut(s)	238, 261
Hin1II	CATG	2 cut(s)	92, 202
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	138, 254
HpaII	CCGG	2 cut(s)	238, 261
Hpy166II	GTNNAC	2 cut(s)	142, 218
Hpy188I	TCNGA	3 cut(s)	246, 253, 319
Hpy188III	TCNNGA	3 cut(s)	89, 181, 227
Hpy8I	GTNNAC	2 cut(s)	142, 218
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	85, 178, 290
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	3 cut(s)	131, 312, 396
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	2 cut(s)	92, 202
LmnI	GCTCC	2 cut(s)	73, 126
LpnPI	CCDG	8 cut(s)	193, 251, 274, 337, 408, 413, 429, 440
Lsp1109I	GCAGC	1 cut(s)	173
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	281
MboII	GAAGA	6 cut(s)	29, 76, 139, 344, 397, 415
MhlI	GDGCHC	1 cut(s)	220
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	58, 128, 151, 240, 268, 291, 301, 423
MseI	TTAA	2 cut(s)	276, 448
MspI	CCGG	2 cut(s)	238, 261
MspR9I	CCNGG	2 cut(s)	262, 428
MvaI	CCWGG	1 cut(s)	428
NciI	CCSGG	1 cut(s)	262
NlaIII	CATG	2 cut(s)	92, 202
NlaIV	GGNNCC	1 cut(s)	75
PagI	TCATGA	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	163, 267
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	235, 392
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SaqAI	TTAA	2 cut(s)	276, 448
SatI	GCNGC	2 cut(s)	162, 266
Sau96I	GGNCC	2 cut(s)	235, 392
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	262, 428
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	9 cut(s)	45, 123, 132, 251, 302, 369, 402, 432, 440
SsiI	CCGC	2 cut(s)	59, 265
StyD4I	CCNGG	2 cut(s)	260, 426
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	85, 178, 290
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	204
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	276, 448
Tru9I	TTAA	2 cut(s)	276, 448
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	4 cut(s)	77, 105, 131, 292
TspGWI	ACGGA	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.