AT4G14465

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004329
Physical Location & Seq
Forward (+)
8320538 .. 8322352
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14465.1

Sequence Viewer

Length: 846 bp
ATGGCAAACCCTTGGTGGACGAACCAGAGTGGTTTAGCGGGCATGGTGGACCATTCGGTCTCCTCAGGCCATCACCAAAACCATCACCACCAAAGTCTTCTTACCAAAGGAGATCTTGGAATAGCCATGAATCAGAGCCAAGACAACGACCAAGACGAAGAAGATGATCCTAGAGAAGGAGCCGTTGAGGTGGTCAACCGTAGACCAAGAGGTAGACCACCAGGATCCAAAAACAAACCCAAAGCTCCAATCTTTGTGACAAGAGACAGCCCCAACGCACTCCGTAGCCATGTCTTGGAGATCTCCGACGGCAGTGACGTCGCCGACACAATCGCTCACTTCTCAAGACGCAGGCAACGCGGCGTTTGCGTTCTCAGCGGGACAGGCTCAGTCGCTAACGTCACCCTCCGCCAAGCCGCCGCACCAGGAGGTGTGGTCTCTCTCCAAGGCAGGTTTGAAATCTTATCTTTAACCGGTGCTTTCCTCCCTGGACCTTCCCCACCCGGGTCAACCGGTTTAACGGTTTACTTAGCCGGGGTCCAGGGTCAGGTCGTTGGAGGTAGCGTTGTAGGCCCACTCTTAGCCATAGGGTCGGTCATGGTGATTGCTGCTACTTTCTCTAACGCTACTTATGAGAGATTGCCCATGGAAGAAGAGGAAGACGGTGGCGGCTCAAGACAGATTCACGGAGGCGGTGACTCACCGCCCAGAATCGGTAGTAACCTGCCTGATCTATCAGGGATGGCCGGGCCAGGCTACAATATGCCGCCGCATCTGATTCCAAATGGGGCTGGTCAGCTAGGGCACGAACCATATACATGGGTCCACGCAAGACCACCTTACTGA

Protein Analysis

281

Amino Acids

29.54

Weight (kDa)

6.16

Isoelectric Point (pI)

48.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 95 - 207 9.9e-23 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
AatII GACGTC 1 cut(s) 321
Acc36I ACCTGC 2 cut(s) 441, 732
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 2 cut(s) 202, 214
AccII CGCG 1 cut(s) 360
AclWI GGATC 3 cut(s) 161, 219, 232
AcoI YGGCCR 1 cut(s) 744
AcyI GRCGYC 1 cut(s) 318
AfiI CCNNNNNNNGG 5 cut(s) 176, 295, 504, 547, 713
AgeI ACCGGT 2 cut(s) 473, 512
AgsI TTSAA 1 cut(s) 458
AjnI CCWGG 5 cut(s) 220, 424, 487, 540, 751
AluBI AGCT 2 cut(s) 245, 799
AluI AGCT 2 cut(s) 245, 799
Alw26I GTCTC 3 cut(s) 64, 258, 442
AlwI GGATC 3 cut(s) 161, 219, 232
Ama87I CYCGRG 1 cut(s) 503
AoxI GGCC 4 cut(s) 67, 571, 744, 749
ApeKI GCWGC 1 cut(s) 608
AsiGI ACCGGT 2 cut(s) 473, 512
AspS9I GGNCC 6 cut(s) 49, 491, 538, 572, 749, 823
AsuC2I CCSGG 4 cut(s) 504, 505, 535, 748
AsuHPI GGTGA 6 cut(s) 65, 77, 394, 613, 693, 707
AvaI CYCGRG 1 cut(s) 503
AvaII GGWCC 4 cut(s) 49, 491, 538, 823
AxyI CCTNAGG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 807
BamHI GGATCC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 89, 666
BbvI GCAGC 1 cut(s) 595
BccI CCATC 3 cut(s) 78, 90, 736
BceAI ACGGC 2 cut(s) 167, 325
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 5 cut(s) 222, 426, 489, 542, 753
BcnI CCSGG 4 cut(s) 504, 505, 535, 748
BcoDI GTCTC 3 cut(s) 64, 258, 442
BfaI CTAG 2 cut(s) 171, 800
BfuAI ACCTGC 2 cut(s) 441, 732
BglII AGATCT 2 cut(s) 112, 300
BisI GCNGC 7 cut(s) 361, 417, 420, 609, 670, 767, 770
BlsI GCNGC 7 cut(s) 362, 418, 421, 610, 671, 768, 771
Bme1390I CCNGG 9 cut(s) 222, 426, 489, 504, 505, 535, 542, 748, 753
Bme18I GGWCC 4 cut(s) 49, 491, 538, 823
BmeT110I CYCGRG 1 cut(s) 503
BmgT120I GGNCC 6 cut(s) 49, 491, 538, 572, 749, 823
BmiI GGNNCC 4 cut(s) 181, 226, 539, 824
BmrFI CCNGG 9 cut(s) 222, 426, 489, 504, 505, 535, 542, 748, 753
BmsI GCATC 1 cut(s) 781
BpiI GAAGAC 2 cut(s) 89, 666
BpuEI CTTGAG 2 cut(s) 328, 658
BpuMI CCSGG 4 cut(s) 504, 505, 535, 748
BsaHI GRCGYC 1 cut(s) 318
BsaI GGTCTC 2 cut(s) 64, 442
BsaJI CCNNGG 7 cut(s) 11, 445, 487, 503, 534, 541, 645
BsaWI WCCGGW 2 cut(s) 473, 512
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 549, 579
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 295, 504, 547, 713
Bse118I RCCGGY 2 cut(s) 473, 512
Bse21I CCTNAGG 1 cut(s) 64
BseBI CCWGG 5 cut(s) 222, 426, 489, 542, 753
BseDI CCNNGG 7 cut(s) 11, 445, 487, 503, 534, 541, 645
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 5 cut(s) 176, 295, 504, 547, 713
BseMII CTCAG 3 cut(s) 78, 388, 402
BseRI GAGGAG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 807
BseXI GCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 69, 573, 746, 751
BshTI ACCGGT 2 cut(s) 473, 512
BsiHKCI CYCGRG 1 cut(s) 503
BsiSI CCGG 5 cut(s) 474, 504, 513, 534, 747
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 5 cut(s) 176, 295, 504, 547, 713
BsmAI GTCTC 3 cut(s) 64, 258, 442
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 4 cut(s) 69, 573, 746, 751
Bso31I GGTCTC 2 cut(s) 64, 442
BsoBI CYCGRG 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 807
Bsp143I GATC 5 cut(s) 112, 166, 224, 300, 730
Bsp19I CCATGG 1 cut(s) 645
BspANI GGCC 4 cut(s) 69, 573, 746, 751
BspCNI CTCAG 3 cut(s) 77, 387, 401
BspFNI CGCG 1 cut(s) 360
BspLI GGNNCC 4 cut(s) 181, 226, 539, 824
BspMI ACCTGC 2 cut(s) 441, 732
BspPI GGATC 3 cut(s) 161, 219, 232
BspTNI GGTCTC 2 cut(s) 64, 442
BsrFI RCCGGY 2 cut(s) 473, 512
BssAI RCCGGY 2 cut(s) 473, 512
BssECI CCNNGG 7 cut(s) 11, 445, 487, 503, 534, 541, 645
BssMI GATC 5 cut(s) 112, 166, 224, 300, 730
BssNI GRCGYC 1 cut(s) 318
BssT1I CCWWGG 3 cut(s) 11, 445, 645
Bst2UI CCWGG 5 cut(s) 222, 426, 489, 542, 753
Bst4CI ACNGT 3 cut(s) 200, 523, 665
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 40, 353
BstDEI CTNAG 5 cut(s) 64, 374, 388, 529, 580
BstDSI CCRYGG 1 cut(s) 645
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 747
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 5 cut(s) 115, 169, 227, 303, 733
BstMAI GTCTC 3 cut(s) 64, 258, 442
BstMBI GATC 5 cut(s) 112, 166, 224, 300, 730
BstMWI GCNNNNNNNGC 5 cut(s) 357, 366, 375, 384, 570
BstNI CCWGG 5 cut(s) 222, 426, 489, 542, 753
BstSCI CCNGG 9 cut(s) 220, 424, 487, 502, 503, 533, 540, 746, 751
BstSLI GKGCMC 1 cut(s) 807
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 595
BstV2I GAAGAC 2 cut(s) 89, 666
BstX2I RGATCY 3 cut(s) 112, 224, 300
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 3 cut(s) 112, 224, 300
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 4 cut(s) 69, 573, 746, 751
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 1 cut(s) 747
BtsI GCAGTG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 2 cut(s) 441, 732
Cac8I GCNNGC 2 cut(s) 40, 353
Cfr10I RCCGGY 2 cut(s) 473, 512
Cfr13I GGNCC 6 cut(s) 49, 491, 538, 572, 749, 823
Cfr9I CCCGGG 1 cut(s) 503
CseI GACGC 1 cut(s) 357
CspAI ACCGGT 2 cut(s) 473, 512
CviAII CATG 6 cut(s) 43, 127, 290, 598, 646, 819
DdeI CTNAG 5 cut(s) 64, 374, 388, 529, 580
DpnI GATC 5 cut(s) 114, 168, 226, 302, 732
DpnII GATC 5 cut(s) 112, 166, 224, 300, 730
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
EciI GGCGGA 1 cut(s) 398
Eco130I CCWWGG 3 cut(s) 11, 445, 645
Eco31I GGTCTC 2 cut(s) 64, 442
Eco47I GGWCC 4 cut(s) 49, 491, 538, 823
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 1 cut(s) 503
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoRII CCWGG 5 cut(s) 220, 424, 487, 540, 751
EcoT14I CCWWGG 3 cut(s) 11, 445, 645
ErhI CCWWGG 3 cut(s) 11, 445, 645
FaeI CATG 6 cut(s) 46, 130, 293, 601, 649, 822
FalI AAGNNNNNCTT 3 cut(s) 99, 131, 823
FaqI GGGAC 1 cut(s) 394
FatI CATG 6 cut(s) 42, 126, 289, 597, 645, 818
FauI CCCGC 2 cut(s) 31, 371
FblI GTMKAC 2 cut(s) 202, 214
Fnu4HI GCNGC 7 cut(s) 361, 417, 420, 609, 670, 767, 770
FokI GGATG 1 cut(s) 754
Fsp4HI GCNGC 7 cut(s) 361, 417, 420, 609, 670, 767, 770
FspBI CTAG 2 cut(s) 171, 800
GluI GCNGC 7 cut(s) 361, 417, 420, 609, 670, 767, 770
HaeIII GGCC 4 cut(s) 69, 573, 746, 751
HapII CCGG 5 cut(s) 474, 504, 513, 534, 747
HgaI GACGC 1 cut(s) 357
Hin1I GRCGYC 1 cut(s) 318
Hin1II CATG 6 cut(s) 46, 130, 293, 601, 649, 822
HincII GTYRAC 2 cut(s) 196, 510
HindII GTYRAC 2 cut(s) 196, 510
HinfI GANTC 5 cut(s) 130, 682, 698, 711, 778
HpaII CCGG 5 cut(s) 474, 504, 513, 534, 747
HphI GGTGA 6 cut(s) 65, 77, 394, 613, 693, 707
Hpy166II GTNNAC 8 cut(s) 18, 49, 196, 203, 215, 510, 526, 826
Hpy188I TCNGA 3 cut(s) 135, 307, 777
Hpy188III TCNNGA 2 cut(s) 345, 675
Hpy8I GTNNAC 8 cut(s) 18, 49, 196, 203, 215, 510, 526, 826
Hpy99I CGWCG 2 cut(s) 311, 323
HpyAV CCTTC 2 cut(s) 170, 504
HpyCH4III ACNGT 3 cut(s) 200, 523, 665
HpyCH4IV ACGT 2 cut(s) 318, 399
HpyF10VI GCNNNNNNNGC 5 cut(s) 357, 366, 375, 384, 570
HpyF3I CTNAG 5 cut(s) 64, 374, 388, 529, 580
HpySE526I ACGT 2 cut(s) 318, 399
Hsp92I GRCGYC 1 cut(s) 318
Hsp92II CATG 6 cut(s) 46, 130, 293, 601, 649, 822
Kzo9I GATC 5 cut(s) 112, 166, 224, 300, 730
LmnI GCTCC 2 cut(s) 179, 250
Lsp1109I GCAGC 1 cut(s) 595
LweI GCATC 1 cut(s) 781
MaeI CTAG 2 cut(s) 171, 800
MaeII ACGT 2 cut(s) 318, 399
MaeIII GTNAC 5 cut(s) 256, 314, 400, 695, 719
MalI GATC 5 cut(s) 114, 168, 226, 302, 732
MboI GATC 5 cut(s) 112, 166, 224, 300, 730
MboII GAAGA 6 cut(s) 89, 170, 173, 662, 665, 671
MflI RGATCY 3 cut(s) 112, 224, 300
MhlI GDGCHC 1 cut(s) 807
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 330, 535
MnlI CCTC 9 cut(s) 73, 181, 203, 416, 422, 494, 551, 649, 683
MseI TTAA 2 cut(s) 470, 518
MslI CAYNNNNRTG 1 cut(s) 817
MspA1I CMGCKG 1 cut(s) 378
MspI CCGG 5 cut(s) 474, 504, 513, 534, 747
MspR9I CCNGG 9 cut(s) 222, 426, 489, 504, 505, 535, 542, 748, 753
MvaI CCWGG 5 cut(s) 222, 426, 489, 542, 753
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 357, 366, 375, 384, 570
NciI CCSGG 4 cut(s) 504, 505, 535, 748
NcoI CCATGG 1 cut(s) 645
NdeII GATC 5 cut(s) 112, 166, 224, 300, 730
NlaIII CATG 6 cut(s) 46, 130, 293, 601, 649, 822
NlaIV GGNNCC 4 cut(s) 181, 226, 539, 824
NmuCI GTSAC 4 cut(s) 256, 314, 400, 695
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 315
PfeI GAWTC 4 cut(s) 130, 682, 711, 778
PflMI CCANNNNNTGG 1 cut(s) 295
PinAI ACCGGT 2 cut(s) 473, 512
PkrI GCNGC 7 cut(s) 362, 418, 421, 610, 671, 768, 771
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 5 cut(s) 220, 424, 487, 540, 751
PspGI CCWGG 5 cut(s) 220, 424, 487, 540, 751
PspN4I GGNNCC 4 cut(s) 181, 226, 539, 824
PspPI GGNCC 6 cut(s) 49, 491, 538, 572, 749, 823
PsuI RGATCY 3 cut(s) 112, 224, 300
RseI CAYNNNNRTG 1 cut(s) 817
SaqAI TTAA 2 cut(s) 470, 518
SatI GCNGC 7 cut(s) 361, 417, 420, 609, 670, 767, 770
Sau3AI GATC 5 cut(s) 112, 166, 224, 300, 730
Sau96I GGNCC 6 cut(s) 49, 491, 538, 572, 749, 823
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 9 cut(s) 222, 426, 489, 504, 505, 535, 542, 748, 753
SduI GDGCHC 1 cut(s) 807
SfaNI GCATC 1 cut(s) 781
SinI GGWCC 4 cut(s) 49, 491, 538, 823
SmaI CCCGGG 1 cut(s) 505
SmiMI CAYNNNNRTG 1 cut(s) 817
SmlI CTYRAG 2 cut(s) 343, 673
SmoI CTYRAG 2 cut(s) 343, 673
SspMI CTAG 2 cut(s) 171, 800
StyD4I CCNGG 9 cut(s) 220, 424, 487, 502, 503, 533, 540, 746, 751
StyI CCWWGG 3 cut(s) 11, 445, 645
TaaI ACNGT 3 cut(s) 200, 523, 665
TaiI ACGT 2 cut(s) 321, 402
TaqII GACCGA 2 cut(s) 46, 583
TauI GCSGC 6 cut(s) 363, 419, 422, 672, 769, 772
TfiI GAWTC 4 cut(s) 130, 682, 711, 778
Tru1I TTAA 2 cut(s) 470, 518
Tru9I TTAA 2 cut(s) 470, 518
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 4 cut(s) 256, 314, 400, 695
TseI GCWGC 1 cut(s) 608
Tsp45I GTSAC 4 cut(s) 256, 314, 400, 695
TspDTI ATGAA 1 cut(s) 143
TspGWI ACGGA 2 cut(s) 272, 702
TspMI CCCGGG 1 cut(s) 503
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 295
VpaK11BI GGWCC 4 cut(s) 49, 491, 538, 823
XagI CCTNNNNNAGG 1 cut(s) 174
XmaI CCCGGG 1 cut(s) 503
XmiI GTMKAC 2 cut(s) 202, 214
XspI CTAG 2 cut(s) 171, 800
ZraI GACGTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.