pycom12g22490

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
23368693 .. 23369589
897 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g22490.1

Sequence Viewer

Length: 897 bp
ATGGCGAACCGGTGGTGGGCTGGACAGGTAGGTCTACCGGGAGGAGCAGTGAACGAAACCTCAGCCGCAGCAGGTGCCGGCAGCTCCCCCATGAAAAACCTCATGAAACCAGATCTGGGGATCTCCATGAACACCACCGGAACCAGCAGCCTCGGAGGATCCGGCGGTGACGAAGACGACAACAACAGCGACGATCCCAAGGAAGGAGCCATCGAAGTCGCCACAAGACGACCTAGAGGCCGTCCCCCCGGCTCCAAAAACAAGCCCAAACCCCCAATCTTTGTGACTAGAGATAGCCCTAACGCCCTCCGCAGCCACGTCATGGAGATATCCAGTGGGGCCGACATCGCCGACAGCGTCGCCCAGTTCGCCAGGAGAAGGCAGCGAGGCGTCTGCGTCATGAGTGGGAGCGGCACCGTCATCAACGTCACGCTCAGGCAGCCGTCCGCGCCCGGCGCGGTCATGGCGCTTCACGGGAGGTTCGAGATTTTGTCCTTAACTGGAGCGTTTTTGCCTGGCCCTGCACTGCCTGGTTCAACCGGGTTGACCATATATTTGGCAGGCGGGCAAGGCCAGGTTGTTGGAGGAAGCGTGGTTGGCCCCCTTGTGGCTTCAGGGCCCGTGATGGTGATCGCGGCAACGTTTTCTAATGCGACGTATGAGAGGTTGCCATTGGAGGAGGAAGAAGAGCAAACAGGAGGGGGTACTAGTTCGGGGACTGCAGCAGGAGGTGCGGGGTCGCCGCCGGGGATTGGAGGTGGTGGGATGGGAGACCCGGCGGCATTGGCAGGGGTTTATAATTTGCCATCGAATATGCTTCCGAATTTGAGCCTTGATCAGCAGGCAGCTTATTCATCTTGGGCTCATGGTCAAGGTGGTGGTAGGCCTCCATTTTAA

Protein Analysis

299

Amino Acids

29.89

Weight (kDa)

5.94

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 104 - 216 8e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AarI CACCTGC 1 cut(s) 62
AasI GACNNNNNNGTC 1 cut(s) 30
Acc36I ACCTGC 1 cut(s) 62
AccB1I GGYRCC 2 cut(s) 74, 413
AccB7I CCANNNNNTGG 1 cut(s) 322
AccBSI CCGCTC 1 cut(s) 411
AccI GTMKAC 1 cut(s) 34
AccII CGCG 3 cut(s) 449, 458, 635
AclI AACGTT 1 cut(s) 641
AclWI GGATC 4 cut(s) 128, 153, 166, 188
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 390
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 7 cut(s) 16, 116, 203, 322, 378, 607, 752
AgeI ACCGGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 537
AhlI ACTAGT 1 cut(s) 707
AjiI CACGTC 1 cut(s) 319
AjnI CCWGG 4 cut(s) 371, 514, 529, 573
AluBI AGCT 2 cut(s) 84, 848
AluI AGCT 2 cut(s) 84, 848
Alw26I GTCTC 1 cut(s) 765
AlwI GGATC 4 cut(s) 128, 153, 166, 188
AoxI GGCC 7 cut(s) 238, 339, 517, 571, 598, 617, 884
ApaI GGGCCC 1 cut(s) 621
ApeKI GCWGC 8 cut(s) 68, 81, 147, 312, 382, 439, 722, 845
ApoI RAATTY 1 cut(s) 823
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 3 cut(s) 451, 458, 469
AspS9I GGNCC 5 cut(s) 339, 518, 599, 617, 618
AsuC2I CCSGG 6 cut(s) 39, 249, 453, 541, 747, 776
AsuHPI GGTGA 2 cut(s) 179, 640
BaeGI GKGCMC 1 cut(s) 621
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 2 cut(s) 74, 413
BanII GRGCYC 2 cut(s) 621, 865
BbsI GAAGAC 1 cut(s) 180
BbvCI CCTCAGC 1 cut(s) 61
BbvI GCAGC 8 cut(s) 80, 93, 159, 324, 394, 451, 734, 857
BccI CCATC 4 cut(s) 218, 619, 760, 814
BceAI ACGGC 2 cut(s) 225, 427
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 4 cut(s) 373, 516, 531, 575
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 6 cut(s) 39, 249, 453, 541, 747, 776
BcoDI GTCTC 1 cut(s) 765
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 3 cut(s) 234, 288, 708
BfmI CTRYAG 1 cut(s) 720
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 62
BglII AGATCT 1 cut(s) 112
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 5 cut(s) 339, 518, 599, 617, 618
BmiI GGNNCC 9 cut(s) 76, 142, 160, 208, 253, 340, 415, 601, 619
BmrI ACTGGG 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 522
Bpu10I CCTNAGC 2 cut(s) 61, 434
BpuMI CCSGG 6 cut(s) 39, 249, 453, 541, 747, 776
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 4 cut(s) 151, 198, 247, 746
BsaWI WCCGGW 2 cut(s) 9, 137
BsaXI ACNNNNNCTCC 4 cut(s) 33, 63, 576, 606
Bsc4I CCNNNNNNNGG 7 cut(s) 16, 116, 203, 322, 378, 607, 752
Bse118I RCCGGY 2 cut(s) 9, 77
Bse1I ACTGG 3 cut(s) 333, 364, 505
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 4 cut(s) 373, 516, 531, 575
BseDI CCNNGG 4 cut(s) 151, 198, 247, 746
BseGI GGATG 1 cut(s) 771
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 7 cut(s) 16, 116, 203, 322, 378, 607, 752
BseMII CTCAG 2 cut(s) 75, 448
BseNI ACTGG 3 cut(s) 333, 364, 505
BseRI GAGGAG 2 cut(s) 57, 692
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 8 cut(s) 80, 93, 159, 324, 394, 451, 734, 857
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 3 cut(s) 449, 458, 635
BshFI GGCC 7 cut(s) 240, 341, 519, 573, 600, 619, 886
BshNI GGYRCC 2 cut(s) 74, 413
BshTI ACCGGT 1 cut(s) 9
BslFI GGGAC 2 cut(s) 228, 730
BslI CCNNNNNNNGG 7 cut(s) 16, 116, 203, 322, 378, 607, 752
BsmAI GTCTC 1 cut(s) 765
BsmFI GGGAC 2 cut(s) 228, 730
BsnI GGCC 7 cut(s) 240, 341, 519, 573, 600, 619, 886
Bso31I GGTCTC 1 cut(s) 765
Bsp120I GGGCCC 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 621, 865
Bsp143I GATC 6 cut(s) 112, 120, 158, 193, 630, 835
BspANI GGCC 7 cut(s) 240, 341, 519, 573, 600, 619, 886
BspCNI CTCAG 2 cut(s) 74, 447
BspFNI CGCG 3 cut(s) 449, 458, 635
BspHI TCATGA 2 cut(s) 102, 399
BspLI GGNNCC 9 cut(s) 76, 142, 160, 208, 253, 340, 415, 601, 619
BspMAI CTGCAG 1 cut(s) 724
BspMI ACCTGC 1 cut(s) 62
BspPI GGATC 4 cut(s) 128, 153, 166, 188
BspQI GCTCTTC 1 cut(s) 681
BspT107I GGYRCC 2 cut(s) 74, 413
BspTNI GGTCTC 1 cut(s) 765
BsrBI CCGCTC 1 cut(s) 411
BsrFI RCCGGY 2 cut(s) 9, 77
BsrI ACTGG 3 cut(s) 333, 364, 505
BssAI RCCGGY 2 cut(s) 9, 77
BssECI CCNNGG 4 cut(s) 151, 198, 247, 746
BssMI GATC 6 cut(s) 112, 120, 158, 193, 630, 835
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 4 cut(s) 373, 516, 531, 575
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 681
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 2 cut(s) 74, 731
BstC8I GCNNGC 4 cut(s) 79, 562, 566, 843
BstDEI CTNAG 2 cut(s) 61, 434
BstF5I GGATG 1 cut(s) 771
BstFNI CGCG 3 cut(s) 449, 458, 635
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 3 cut(s) 451, 458, 469
BstKTI GATC 6 cut(s) 115, 123, 161, 196, 633, 838
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 6 cut(s) 112, 120, 158, 193, 630, 835
BstNI CCWGG 4 cut(s) 373, 516, 531, 575
BstSFI CTRYAG 1 cut(s) 720
BstSLI GKGCMC 1 cut(s) 621
BstUI CGCG 3 cut(s) 449, 458, 635
BstV1I GCAGC 8 cut(s) 80, 93, 159, 324, 394, 451, 734, 857
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 3 cut(s) 112, 120, 158
BstXI CCANNNNNNTGG 2 cut(s) 556, 581
BstYI RGATCY 3 cut(s) 112, 120, 158
BsuRI GGCC 7 cut(s) 240, 341, 519, 573, 600, 619, 886
BtgZI GCGATG 1 cut(s) 331
BtrI CACGTC 1 cut(s) 319
BtsCI GGATG 1 cut(s) 771
BtsI GCAGTG 2 cut(s) 54, 524
BtsIMutI CAGTG 3 cut(s) 54, 340, 524
BveI ACCTGC 1 cut(s) 62
Cac8I GCNNGC 4 cut(s) 79, 562, 566, 843
CciI TCATGA 2 cut(s) 102, 399
CfoI GCGC 3 cut(s) 451, 458, 469
Cfr10I RCCGGY 2 cut(s) 9, 77
Cfr13I GGNCC 5 cut(s) 339, 518, 599, 617, 618
CseI GACGC 3 cut(s) 346, 379, 385
Csp6I GTAC 1 cut(s) 705
CspAI ACCGGT 1 cut(s) 9
CviAII CATG 7 cut(s) 91, 103, 127, 322, 400, 463, 866
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 2 cut(s) 61, 434
DpnI GATC 6 cut(s) 114, 122, 160, 195, 632, 837
DpnII GATC 6 cut(s) 112, 120, 158, 193, 630, 835
DrdI GACNNNNNNGTC 1 cut(s) 30
DseDI GACNNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 681
EarI CTCTTC 1 cut(s) 681
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 886
Eco24I GRGCYC 2 cut(s) 621, 865
Eco31I GGTCTC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 617
EcoRII CCWGG 4 cut(s) 371, 514, 529, 573
EcoRV GATATC 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 2 cut(s) 621, 865
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 7 cut(s) 94, 106, 130, 325, 403, 466, 869
FaqI GGGAC 2 cut(s) 228, 730
FatI CATG 7 cut(s) 90, 102, 126, 321, 399, 462, 865
FauI CCCGC 2 cut(s) 557, 727
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 1 cut(s) 34
FokI GGATG 1 cut(s) 778
FriOI GRGCYC 2 cut(s) 621, 865
FspBI CTAG 3 cut(s) 234, 288, 708
GlaI GCGC 3 cut(s) 450, 457, 468
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 7 cut(s) 240, 341, 519, 573, 600, 619, 886
HgaI GACGC 3 cut(s) 346, 379, 385
HhaI GCGC 3 cut(s) 451, 458, 469
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 7 cut(s) 94, 106, 130, 325, 403, 466, 869
Hin6I GCGC 3 cut(s) 449, 456, 467
HinP1I GCGC 3 cut(s) 449, 456, 467
HincII GTYRAC 1 cut(s) 546
HindII GTYRAC 1 cut(s) 546
HphI GGTGA 2 cut(s) 179, 640
Hpy166II GTNNAC 3 cut(s) 35, 52, 546
Hpy188I TCNGA 2 cut(s) 155, 822
Hpy188III TCNNGA 3 cut(s) 103, 400, 484
Hpy8I GTNNAC 3 cut(s) 35, 52, 546
Hpy99I CGWCG 3 cut(s) 194, 362, 658
HpyAV CCTTC 2 cut(s) 197, 372
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 4 cut(s) 318, 426, 641, 656
HpyCH4V TGCA 2 cut(s) 524, 722
HpyF3I CTNAG 2 cut(s) 61, 434
HpySE526I ACGT 4 cut(s) 318, 426, 641, 656
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 7 cut(s) 94, 106, 130, 325, 403, 466, 869
HspAI GCGC 3 cut(s) 449, 456, 467
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 6 cut(s) 112, 120, 158, 193, 630, 835
LguI GCTCTTC 1 cut(s) 681
LmnI GCTCC 6 cut(s) 44, 89, 206, 257, 408, 503
Lsp1109I GCAGC 8 cut(s) 80, 93, 159, 324, 394, 451, 734, 857
MaeI CTAG 3 cut(s) 234, 288, 708
MaeII ACGT 4 cut(s) 318, 426, 641, 656
MaeIII GTNAC 3 cut(s) 167, 283, 427
MalI GATC 6 cut(s) 114, 122, 160, 195, 632, 837
MbiI CCGCTC 1 cut(s) 411
MboI GATC 6 cut(s) 112, 120, 158, 193, 630, 835
MboII GAAGA 3 cut(s) 185, 695, 698
MflI RGATCY 3 cut(s) 112, 120, 158
MhlI GDGCHC 2 cut(s) 621, 865
MluCI AATT 2 cut(s) 799, 823
MmeI TCCRAC 1 cut(s) 562
MroNI GCCGGC 1 cut(s) 77
MseI TTAA 2 cut(s) 497, 895
MvaI CCWGG 4 cut(s) 373, 516, 531, 575
MvnI CGCG 3 cut(s) 449, 458, 635
NaeI GCCGGC 1 cut(s) 79
NciI CCSGG 6 cut(s) 39, 249, 453, 541, 747, 776
NdeII GATC 6 cut(s) 112, 120, 158, 193, 630, 835
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 7 cut(s) 94, 106, 130, 325, 403, 466, 869
NlaIV GGNNCC 9 cut(s) 76, 142, 160, 208, 253, 340, 415, 601, 619
NmuCI GTSAC 3 cut(s) 167, 283, 427
PagI TCATGA 2 cut(s) 102, 399
PaqCI CACCTGC 1 cut(s) 62
PceI AGGCCT 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 681
PcsI WCGNNNNNNNCGW 2 cut(s) 354, 480
PdiI GCCGGC 1 cut(s) 79
PflFI GACNNNGTC 1 cut(s) 356
PflMI CCANNNNNTGG 1 cut(s) 322
PinAI ACCGGT 1 cut(s) 9
PsiI TTATAA 1 cut(s) 798
Psp1406I AACGTT 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 371, 514, 529, 573
PspGI CCWGG 4 cut(s) 371, 514, 529, 573
PspN4I GGNNCC 9 cut(s) 76, 142, 160, 208, 253, 340, 415, 601, 619
PspOMI GGGCCC 1 cut(s) 617
PspPI GGNCC 5 cut(s) 339, 518, 599, 617, 618
PstI CTGCAG 1 cut(s) 724
PsuI RGATCY 3 cut(s) 112, 120, 158
PsyI GACNNNGTC 1 cut(s) 356
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
SapI GCTCTTC 1 cut(s) 681
SaqAI TTAA 2 cut(s) 497, 895
Sau3AI GATC 6 cut(s) 112, 120, 158, 193, 630, 835
Sau96I GGNCC 5 cut(s) 339, 518, 599, 617, 618
SduI GDGCHC 2 cut(s) 621, 865
SfcI CTRYAG 1 cut(s) 720
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 2 cut(s) 799, 823
SseBI AGGCCT 1 cut(s) 886
SspMI CTAG 3 cut(s) 234, 288, 708
StuI AGGCCT 1 cut(s) 886
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 4 cut(s) 321, 429, 644, 659
TaqI TCGA 3 cut(s) 213, 483, 809
TasI AATT 2 cut(s) 799, 823
TauI GCSGC 5 cut(s) 68, 414, 638, 745, 782
Tru1I TTAA 2 cut(s) 497, 895
Tru9I TTAA 2 cut(s) 497, 895
TscAI CASTG 3 cut(s) 54, 340, 531
TseFI GTSAC 3 cut(s) 167, 283, 427
TseI GCWGC 8 cut(s) 68, 81, 147, 312, 382, 439, 722, 845
Tsp45I GTSAC 3 cut(s) 167, 283, 427
TspDTI ATGAA 4 cut(s) 107, 119, 143, 843
TspRI CASTG 3 cut(s) 54, 340, 531
Tth111I GACNNNGTC 1 cut(s) 356
Van91I CCANNNNNTGG 1 cut(s) 322
XapI RAATTY 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 3 cut(s) 234, 288, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.