Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Reverse (-)

2401099 .. 2401956

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G034400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGACTCGGCAGCCACCAATTCGGCCGCACTCAACAAGCAGCGCGAGCTCGAAATCTCCATCAACGAAAACAACAGCGGCAGAAGCAGCGGCGGAGATGAAGACAGAGACCAAGATGAGCCCAAAGAAGGAGCAGTCGAGATTGGATCCCGCAGGCCAAGAGGCCGCCCTCCGGGATCCAAAAACAAGCCCAAACCCCCCATCTTCGTCACCCGGGACAGCCCCAACTCCCTCCGCAGCCACGTCATGGAGGTGGCTGGAGGCGCTGACGTGGCCGAGAGCGTGGCCCAGTTTGCGAGGCGGCGGCAGAGAGGAGTGTGTGTCCTCAGCGGGAGTGGCTCAGTGGCGAATGTAACGCTCAGGCAACCTGCGGCTCCTGGAGCTGTTGTGGCACTGCAAGGAAGGTTTGAGATTTTGTCTCTGAGTGGTGCCTTCCTGCCCGGGCCCGCCCCACCCGGGTCAACGGGGCTGACGGTGTACTTGGCTGCCGGGAACGGGCAGGTGGTTGGGGGCAGTGTGGTGGGGTCACTTGTGGCAGCAGGGCCAGTGATGGTGGTGGCAGCAACATTTGCAAATGCTACATATGAGAGACTGCCTCTTGAGGAAGATGAAGAAGGTGGAGGAAGTGGAGGAGGAGGGCATAACAATGGGGGTTCAGGGAATTCTCCAACTGCGGGAGGGAGCAGTGGGGCCCAGTTGGGGAGTGGAGGGCATCAGCATCAGCAGCAGCTGCCTGACCCTTCATCTGGAGGGCTGCCTAATATTTACAGTCATCATCTCCCTCCAAATCTGATCCCAAATGGTGGCCATGGACAGCTTGGCCATGAAGCCTATGCTTGGGCAAGACCACCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

286

Amino Acids

28.89

Weight (kDa)

6.24

Isoelectric Point (pI)

54.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	2 cut(s)	376, 490
AccB1I	GGYRCC	1 cut(s)	428
AccB7I	CCANNNNNTGG	2 cut(s)	247, 803
AccII	CGCG	1 cut(s)	45
AclWI	GGATC	5 cut(s)	141, 154, 171, 184, 787
AcoI	YGGCCR	4 cut(s)	24, 273, 805, 820
AcsI	RAATTY	1 cut(s)	661
AfaI	GTAC	1 cut(s)	479
AjiI	CACGTC	2 cut(s)	244, 271
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	4 cut(s)	49, 383, 730, 817
AluI	AGCT	4 cut(s)	49, 383, 730, 817
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	3 cut(s)	102, 423, 583
AlwI	GGATC	5 cut(s)	141, 154, 171, 184, 787
AlwNI	CAGNNNCTG	1 cut(s)	730
Ama87I	CYCGRG	3 cut(s)	213, 440, 455
ApaI	GGGCCC	2 cut(s)	447, 694
ApoI	RAATTY	1 cut(s)	661
AspLEI	GCGC	2 cut(s)	45, 266
AspS9I	GGNCC	6 cut(s)	286, 443, 444, 542, 690, 691
AsuC2I	CCSGG	8 cut(s)	174, 214, 215, 441, 442, 456, 457, 490
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	3 cut(s)	213, 440, 455
BaeGI	GKGCMC	2 cut(s)	447, 694
BalI	TGGCCA	2 cut(s)	807, 822
BamHI	GGATCC	2 cut(s)	146, 176
BanI	GGYRCC	1 cut(s)	428
BanII	GRGCYC	4 cut(s)	51, 123, 447, 694
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	51
BbvCI	CCTCAGC	1 cut(s)	326
BccI	CCATC	3 cut(s)	68, 209, 544
BciT130I	CCWGG	1 cut(s)	378
BcnI	CCSGG	8 cut(s)	174, 214, 215, 441, 442, 456, 457, 490
BcoDI	GTCTC	3 cut(s)	102, 423, 583
BfoI	RGCGCY	1 cut(s)	267
BfuAI	ACCTGC	2 cut(s)	376, 490
Bme1390I	CCNGG	9 cut(s)	174, 214, 215, 378, 441, 442, 456, 457, 490
BmeT110I	CYCGRG	3 cut(s)	213, 440, 455
BmgBI	CACGTC	2 cut(s)	244, 271
BmgT120I	GGNCC	6 cut(s)	286, 443, 444, 542, 690, 691
BmiI	GGNNCC	7 cut(s)	148, 178, 375, 430, 445, 691, 692
BmrFI	CCNGG	9 cut(s)	174, 214, 215, 378, 441, 442, 456, 457, 490
BmrI	ACTGGG	2 cut(s)	283, 688
BmsI	GCATC	2 cut(s)	721, 727
BmuI	ACTGGG	2 cut(s)	283, 688
BpiI	GAAGAC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	580, 612
BpmI	CTGGAG	3 cut(s)	279, 399, 768
Bpu10I	CCTNAGC	2 cut(s)	326, 359
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	8 cut(s)	174, 214, 215, 441, 442, 456, 457, 490
BsaI	GGTCTC	1 cut(s)	102
BsaJI	CCNNGG	4 cut(s)	213, 440, 455, 808
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 372, 402
Bse1I	ACTGG	3 cut(s)	289, 545, 694
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	213, 440, 455, 808
BseMII	CTCAG	4 cut(s)	340, 354, 373, 413
BseNI	ACTGG	3 cut(s)	289, 545, 694
BseRI	GAGGAG	3 cut(s)	327, 645, 648
BseSI	GKGCMC	2 cut(s)	447, 694
BseX3I	CGGCCG	1 cut(s)	24
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	3 cut(s)	213, 440, 455
BsiSI	CCGG	5 cut(s)	173, 214, 441, 456, 489
BslFI	GGGAC	1 cut(s)	230
BsmAI	GTCTC	3 cut(s)	102, 423, 583
BsmFI	GGGAC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	102
BsoBI	CYCGRG	3 cut(s)	213, 440, 455
Bsp120I	GGGCCC	2 cut(s)	443, 690
Bsp1286I	GDGCHC	4 cut(s)	51, 123, 447, 694
Bsp143I	GATC	3 cut(s)	146, 176, 792
Bsp19I	CCATGG	1 cut(s)	808
BspCNI	CTCAG	4 cut(s)	339, 353, 372, 414
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	7 cut(s)	148, 178, 375, 430, 445, 691, 692
BspMI	ACCTGC	2 cut(s)	376, 490
BspPI	GGATC	5 cut(s)	141, 154, 171, 184, 787
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	289, 545, 694
BssECI	CCNNGG	4 cut(s)	213, 440, 455, 808
BssMI	GATC	3 cut(s)	146, 176, 792
BssT1I	CCWWGG	1 cut(s)	808
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	475, 770
BstAPI	GCANNNNNTGC	2 cut(s)	569, 730
BstC8I	GCNNGC	3 cut(s)	47, 155, 447
BstDEI	CTNAG	4 cut(s)	326, 340, 359, 422
BstDSI	CCRYGG	1 cut(s)	808
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	45, 266
BstKTI	GATC	3 cut(s)	149, 179, 795
BstMAI	GTCTC	3 cut(s)	102, 423, 583
BstMBI	GATC	3 cut(s)	146, 176, 792
BstMCI	CGRYCG	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	9 cut(s)	172, 212, 213, 376, 439, 440, 454, 455, 488
BstSLI	GKGCMC	2 cut(s)	447, 694
BstUI	CGCG	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	2 cut(s)	146, 176
BstYI	RGATCY	2 cut(s)	146, 176
BstZI	CGGCCG	1 cut(s)	24
BtgI	CCRYGG	1 cut(s)	808
BtrI	CACGTC	2 cut(s)	244, 271
BtsI	GCAGTG	3 cut(s)	392, 520, 691
BtsIMutI	CAGTG	5 cut(s)	348, 392, 520, 552, 691
BveI	ACCTGC	2 cut(s)	376, 490
Cac8I	GCNNGC	3 cut(s)	47, 155, 447
CaiI	CAGNNNCTG	1 cut(s)	730
CfoI	GCGC	2 cut(s)	45, 266
Cfr13I	GGNCC	6 cut(s)	286, 443, 444, 542, 690, 691
Cfr9I	CCCGGG	3 cut(s)	213, 440, 455
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	3 cut(s)	247, 809, 824
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	4 cut(s)	326, 340, 359, 422
DpnI	GATC	3 cut(s)	148, 178, 794
DpnII	GATC	3 cut(s)	146, 176, 792
EaeI	YGGCCR	4 cut(s)	24, 273, 805, 820
EagI	CGGCCG	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	49
EclXI	CGGCCG	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	808
Eco24I	GRGCYC	4 cut(s)	51, 123, 447, 694
Eco31I	GGTCTC	1 cut(s)	102
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	49
Eco88I	CYCGRG	3 cut(s)	213, 440, 455
EcoICRI	GAGCTC	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	690
EcoRI	GAATTC	1 cut(s)	661
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	808
EcoT38I	GRGCYC	4 cut(s)	51, 123, 447, 694
ErhI	CCWWGG	1 cut(s)	808
FaeI	CATG	3 cut(s)	250, 812, 827
FaiI	YATR	7 cut(s)	248, 583, 585, 642, 810, 825, 834
FalI	AAGNNNNNCTT	1 cut(s)	835
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	3 cut(s)	246, 808, 823
FauI	CCCGC	4 cut(s)	158, 323, 454, 667
FauNDI	CATATG	1 cut(s)	583
FriOI	GRGCYC	4 cut(s)	51, 123, 447, 694
GlaI	GCGC	2 cut(s)	44, 265
GsuI	CTGGAG	3 cut(s)	279, 399, 768
HaeII	RGCGCY	1 cut(s)	267
HapII	CCGG	5 cut(s)	173, 214, 441, 456, 489
HhaI	GCGC	2 cut(s)	45, 266
Hin1II	CATG	3 cut(s)	250, 812, 827
Hin6I	GCGC	2 cut(s)	43, 264
HinP1I	GCGC	2 cut(s)	43, 264
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	5 cut(s)	173, 214, 441, 456, 489
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	462, 478
Hpy188I	TCNGA	2 cut(s)	423, 792
Hpy188III	TCNNGA	3 cut(s)	139, 599, 747
Hpy8I	GTNNAC	2 cut(s)	462, 478
HpyAV	CCTTC	5 cut(s)	122, 396, 442, 608, 750
HpyCH4III	ACNGT	2 cut(s)	475, 770
HpyCH4IV	ACGT	2 cut(s)	243, 270
HpyCH4V	TGCA	2 cut(s)	397, 572
HpyF3I	CTNAG	4 cut(s)	326, 340, 359, 422
HpySE526I	ACGT	2 cut(s)	243, 270
Hsp92II	CATG	3 cut(s)	250, 812, 827
HspAI	GCGC	2 cut(s)	43, 264
Kzo9I	GATC	3 cut(s)	146, 176, 792
LmnI	GCTCC	4 cut(s)	131, 379, 380, 681
LweI	GCATC	2 cut(s)	721, 727
MaeII	ACGT	2 cut(s)	243, 270
MaeIII	GTNAC	3 cut(s)	208, 352, 525
MalI	GATC	3 cut(s)	148, 178, 794
MboI	GATC	3 cut(s)	146, 176, 792
MboII	GAAGA	4 cut(s)	113, 196, 617, 623
MflI	RGATCY	2 cut(s)	146, 176
MhlI	GDGCHC	4 cut(s)	51, 123, 447, 694
MlsI	TGGCCA	2 cut(s)	807, 822
MluCI	AATT	2 cut(s)	19, 661
MluNI	TGGCCA	2 cut(s)	807, 822
MmeI	TCCRAC	1 cut(s)	692
Mox20I	TGGCCA	2 cut(s)	807, 822
MscI	TGGCCA	2 cut(s)	807, 822
MslI	CAYNNNNRTG	2 cut(s)	251, 645
Msp20I	TGGCCA	2 cut(s)	807, 822
MspA1I	CMGCKG	4 cut(s)	78, 90, 330, 730
MspI	CCGG	5 cut(s)	173, 214, 441, 456, 489
MspR9I	CCNGG	9 cut(s)	174, 214, 215, 378, 441, 442, 456, 457, 490
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	45
NciI	CCSGG	8 cut(s)	174, 214, 215, 441, 442, 456, 457, 490
NcoI	CCATGG	1 cut(s)	808
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	3 cut(s)	146, 176, 792
NlaIII	CATG	3 cut(s)	250, 812, 827
NlaIV	GGNNCC	7 cut(s)	148, 178, 375, 430, 445, 691, 692
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	2 cut(s)	208, 525
PaqCI	CACCTGC	1 cut(s)	490
PflMI	CCANNNNNTGG	2 cut(s)	247, 803
PfoI	TCCNGGA	2 cut(s)	172, 376
Psp124BI	GAGCTC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	7 cut(s)	148, 178, 375, 430, 445, 691, 692
PspOMI	GGGCCC	2 cut(s)	443, 690
PspPI	GGNCC	6 cut(s)	286, 443, 444, 542, 690, 691
PstNI	CAGNNNCTG	1 cut(s)	730
PsuI	RGATCY	2 cut(s)	146, 176
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	2 cut(s)	251, 645
SacI	GAGCTC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	146, 176, 792
Sau96I	GGNCC	6 cut(s)	286, 443, 444, 542, 690, 691
ScrFI	CCNGG	9 cut(s)	174, 214, 215, 378, 441, 442, 456, 457, 490
SduI	GDGCHC	4 cut(s)	51, 123, 447, 694
SfaNI	GCATC	2 cut(s)	721, 727
SmaI	CCCGGG	3 cut(s)	215, 442, 457
SmiMI	CAYNNNNRTG	2 cut(s)	251, 645
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SrfI	GCCCGGGC	1 cut(s)	442
Sse9I	AATT	2 cut(s)	19, 661
SspI	AATATT	1 cut(s)	763
SstI	GAGCTC	1 cut(s)	51
StyD4I	CCNGG	9 cut(s)	172, 212, 213, 376, 439, 440, 454, 455, 488
StyI	CCWWGG	1 cut(s)	808
TaaI	ACNGT	2 cut(s)	475, 770
TaiI	ACGT	2 cut(s)	246, 273
TaqI	TCGA	2 cut(s)	51, 138
TasI	AATT	2 cut(s)	19, 661
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	7 cut(s)	29, 81, 93, 168, 304, 307, 374
TscAI	CASTG	5 cut(s)	348, 399, 520, 552, 691
TseFI	GTSAC	2 cut(s)	208, 525
Tsp45I	GTSAC	2 cut(s)	208, 525
TspDTI	ATGAA	4 cut(s)	114, 624, 732, 840
TspMI	CCCGGG	3 cut(s)	213, 440, 455
TspRI	CASTG	5 cut(s)	348, 399, 520, 552, 691
Van91I	CCANNNNNTGG	2 cut(s)	247, 803
XapI	RAATTY	1 cut(s)	661
XcmI	CCANNNNNNNNNTGG	2 cut(s)	701, 815
XmaI	CCCGGG	3 cut(s)	213, 440, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.