Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Reverse (-)

30885070 .. 30885697

Gene Structure 628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1228100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGAACCGGTGGTGGGCTGGACATGTAGGTCTACCGGGAGGAGGAGTACTGAACGAAACCTCAGCCGTAGCAGCCGCCGGCAGCTCCCTCATGAAAAACATCATCAAACCAGATCTGGGAATCTCCATGAACAACACCGGAACGAGCAGCCTCGGAGGATCCGGGGGTGATGAAGATGATAACAACAGCGACGACCCCAAGGAAGGAGCCATCGAAGTCGCCACGAGACGACCTAGAGGCCGTCCGCCTGGCTCCAAAAACAAGCCCAAACCCCCAATCTTTGTGACTAGAGACAGCCCTAACGCTCTCCGCAGCCACGTCATGGAGATATCCAACGGGGCCGACATCGCTAACAGCGTAGCCCAGTTCGCCAGGAGAAGGCAGCGCGGCGTCTGCGTCATGAGTGGGAGCGGCACCGTCACCAACGTCACGCTCAGGCAGCCATCCGCGCCCGGCGCAGTCATGGCGCTTCACGGGAGGTTCGAGATTTTGTCCTTGACTGGAGCGTTTTTGCCTGGCCCTGCACCGCCTGGGTCGACTGGAATGACCATATACTTGGCAGGCGGGCAGGGCCAGGGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

196

Amino Acids

19.98

Weight (kDa)

9.88

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	105 - 193	2.4e-16	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	2 cut(s)	34, 539
AccII	CGCG	2 cut(s)	390, 452
AciI	CCGC	8 cut(s)	78, 248, 313, 390, 414, 450, 530, 567
AclWI	GGATC	2 cut(s)	156, 169
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	6 cut(s)	16, 44, 119, 206, 325, 381
AflIII	ACRYGT	1 cut(s)	25
AgeI	ACCGGT	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	5 cut(s)	250, 374, 517, 532, 576
AluBI	AGCT	1 cut(s)	87
AluI	AGCT	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	223, 288
AlwI	GGATC	2 cut(s)	156, 169
AoxI	GGCC	5 cut(s)	241, 342, 520, 574, 580
ApaI	GGGCCC	1 cut(s)	584
ApeKI	GCWGC	6 cut(s)	74, 84, 150, 315, 385, 442
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	4 cut(s)	390, 454, 461, 472
AspS9I	GGNCC	5 cut(s)	342, 521, 574, 580, 581
AsuC2I	CCSGG	3 cut(s)	39, 166, 456
AsuHPI	GGTGA	2 cut(s)	182, 415
BaeGI	GKGCMC	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	584
BauI	CACGAG	1 cut(s)	226
BbvCI	CCTCAGC	1 cut(s)	64
BbvI	GCAGC	6 cut(s)	86, 96, 162, 327, 397, 454
BccI	CCATC	2 cut(s)	221, 454
BceAI	ACGGC	2 cut(s)	53, 228
BciT130I	CCWGG	5 cut(s)	252, 376, 519, 534, 578
BcnI	CCSGG	3 cut(s)	39, 166, 456
BcoDI	GTCTC	2 cut(s)	223, 288
BfaI	CTAG	2 cut(s)	237, 291
BfoI	RGCGCY	1 cut(s)	473
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	9 cut(s)	75, 78, 85, 151, 316, 386, 391, 415, 443
BlsI	GCNGC	9 cut(s)	76, 79, 86, 152, 317, 387, 392, 416, 444
BmcAI	AGTACT	1 cut(s)	51
Bme1390I	CCNGG	8 cut(s)	39, 166, 252, 376, 456, 519, 534, 578
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	5 cut(s)	342, 521, 574, 580, 581
BmiI	GGNNCC	6 cut(s)	163, 211, 256, 343, 418, 582
BmrFI	CCNGG	8 cut(s)	39, 166, 252, 376, 456, 519, 534, 578
BmrI	ACTGGG	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	361
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	64, 437
BpuMI	CCSGG	3 cut(s)	39, 166, 456
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	154, 165, 201, 533, 577
BsaWI	WCCGGW	2 cut(s)	9, 140
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 44, 119, 206, 325, 381
Bse118I	RCCGGY	2 cut(s)	9, 80
Bse1I	ACTGG	3 cut(s)	367, 508, 547
BseBI	CCWGG	5 cut(s)	252, 376, 519, 534, 578
BseDI	CCNNGG	5 cut(s)	154, 165, 201, 533, 577
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	6 cut(s)	16, 44, 119, 206, 325, 381
BseMII	CTCAG	2 cut(s)	78, 451
BseNI	ACTGG	3 cut(s)	367, 508, 547
BseRI	GAGGAG	2 cut(s)	57, 60
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	6 cut(s)	86, 96, 162, 327, 397, 454
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	390, 452
BshFI	GGCC	5 cut(s)	243, 344, 522, 576, 582
BshNI	GGYRCC	1 cut(s)	416
BshTI	ACCGGT	1 cut(s)	9
BsiSI	CCGG	6 cut(s)	10, 38, 81, 141, 165, 456
BslI	CCNNNNNNNGG	6 cut(s)	16, 44, 119, 206, 325, 381
BsmAI	GTCTC	2 cut(s)	223, 288
BsmBI	CGTCTC	1 cut(s)	223
BsnI	GGCC	5 cut(s)	243, 344, 522, 576, 582
Bsp120I	GGGCCC	1 cut(s)	580
Bsp1286I	GDGCHC	1 cut(s)	584
Bsp143I	GATC	2 cut(s)	115, 161
BspACI	CCGC	8 cut(s)	78, 248, 313, 390, 414, 450, 530, 567
BspANI	GGCC	5 cut(s)	243, 344, 522, 576, 582
BspCNI	CTCAG	2 cut(s)	77, 450
BspFNI	CGCG	2 cut(s)	390, 452
BspHI	TCATGA	2 cut(s)	93, 402
BspLI	GGNNCC	6 cut(s)	163, 211, 256, 343, 418, 582
BspPI	GGATC	2 cut(s)	156, 169
BspT107I	GGYRCC	1 cut(s)	416
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	2 cut(s)	9, 80
BsrI	ACTGG	3 cut(s)	367, 508, 547
BssAI	RCCGGY	2 cut(s)	9, 80
BssECI	CCNNGG	5 cut(s)	154, 165, 201, 533, 577
BssMI	GATC	2 cut(s)	115, 161
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	5 cut(s)	252, 376, 519, 534, 578
Bst4CI	ACNGT	1 cut(s)	421
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	82, 565, 569
BstDEI	CTNAG	2 cut(s)	64, 437
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	2 cut(s)	390, 452
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	4 cut(s)	390, 454, 461, 472
BstKTI	GATC	2 cut(s)	118, 164
BstMAI	GTCTC	2 cut(s)	223, 288
BstMBI	GATC	2 cut(s)	115, 161
BstMWI	GCNNNNNNNGC	9 cut(s)	74, 350, 371, 396, 442, 451, 458, 467, 573
BstNI	CCWGG	5 cut(s)	252, 376, 519, 534, 578
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	8 cut(s)	37, 164, 250, 374, 454, 517, 532, 576
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	2 cut(s)	390, 452
BstV1I	GCAGC	6 cut(s)	86, 96, 162, 327, 397, 454
BstX2I	RGATCY	2 cut(s)	115, 161
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	2 cut(s)	115, 161
BsuRI	GGCC	5 cut(s)	243, 344, 522, 576, 582
BtgZI	GCGATG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	446
Cac8I	GCNNGC	3 cut(s)	82, 565, 569
CciI	TCATGA	2 cut(s)	93, 402
CfoI	GCGC	4 cut(s)	390, 454, 461, 472
Cfr10I	RCCGGY	2 cut(s)	9, 80
Cfr13I	GGNCC	5 cut(s)	342, 521, 574, 580, 581
CseI	GACGC	2 cut(s)	382, 388
Csp6I	GTAC	1 cut(s)	50
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	6 cut(s)	26, 94, 130, 325, 403, 466
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	2 cut(s)	64, 437
DpnI	GATC	2 cut(s)	117, 163
DpnII	GATC	2 cut(s)	115, 161
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	5 cut(s)	250, 374, 517, 532, 576
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	6 cut(s)	29, 97, 133, 328, 406, 469
FaiI	YATR	8 cut(s)	27, 95, 131, 326, 404, 467, 554, 556
FatI	CATG	6 cut(s)	25, 93, 129, 324, 402, 465
FauI	CCCGC	1 cut(s)	560
FblI	GTMKAC	2 cut(s)	34, 539
Fnu4HI	GCNGC	9 cut(s)	75, 78, 85, 151, 316, 386, 391, 415, 443
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	9 cut(s)	75, 78, 85, 151, 316, 386, 391, 415, 443
FspBI	CTAG	2 cut(s)	237, 291
GlaI	GCGC	4 cut(s)	389, 453, 460, 471
GluI	GCNGC	9 cut(s)	75, 78, 85, 151, 316, 386, 391, 415, 443
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	243, 344, 522, 576, 582
HapII	CCGG	6 cut(s)	10, 38, 81, 141, 165, 456
HgaI	GACGC	2 cut(s)	382, 388
HhaI	GCGC	4 cut(s)	390, 454, 461, 472
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	6 cut(s)	29, 97, 133, 328, 406, 469
Hin6I	GCGC	4 cut(s)	388, 452, 459, 470
HinP1I	GCGC	4 cut(s)	388, 452, 459, 470
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	6 cut(s)	10, 38, 81, 141, 165, 456
HphI	GGTGA	2 cut(s)	182, 415
Hpy166II	GTNNAC	2 cut(s)	35, 540
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	3 cut(s)	94, 403, 487
Hpy8I	GTNNAC	2 cut(s)	35, 540
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	200, 375
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	2 cut(s)	321, 429
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	9 cut(s)	74, 350, 371, 396, 442, 451, 458, 467, 573
HpyF3I	CTNAG	2 cut(s)	64, 437
HpySE526I	ACGT	2 cut(s)	321, 429
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	29, 97, 133, 328, 406, 469
HspAI	GCGC	4 cut(s)	388, 452, 459, 470
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	115, 161
LmnI	GCTCC	5 cut(s)	92, 209, 260, 411, 506
Lsp1109I	GCAGC	6 cut(s)	86, 96, 162, 327, 397, 454
MaeI	CTAG	2 cut(s)	237, 291
MaeII	ACGT	2 cut(s)	321, 429
MaeIII	GTNAC	3 cut(s)	286, 421, 430
MalI	GATC	2 cut(s)	117, 163
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	2 cut(s)	115, 161
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	2 cut(s)	115, 161
MhlI	GDGCHC	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	360
MnlI	CCTC	8 cut(s)	35, 38, 73, 101, 152, 164, 233, 474
MroNI	GCCGGC	1 cut(s)	80
MspI	CCGG	6 cut(s)	10, 38, 81, 141, 165, 456
MspR9I	CCNGG	8 cut(s)	39, 166, 252, 376, 456, 519, 534, 578
MvaI	CCWGG	5 cut(s)	252, 376, 519, 534, 578
MvnI	CGCG	2 cut(s)	390, 452
MwoI	GCNNNNNNNGC	9 cut(s)	74, 350, 371, 396, 442, 451, 458, 467, 573
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	3 cut(s)	39, 166, 456
NdeII	GATC	2 cut(s)	115, 161
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	6 cut(s)	29, 97, 133, 328, 406, 469
NlaIV	GGNNCC	6 cut(s)	163, 211, 256, 343, 418, 582
NmuCI	GTSAC	3 cut(s)	286, 421, 430
NspI	RCATGY	1 cut(s)	29
PagI	TCATGA	2 cut(s)	93, 402
PciI	ACATGT	1 cut(s)	25
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 483
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	9
PkrI	GCNGC	9 cut(s)	76, 79, 86, 152, 317, 387, 392, 416, 444
PscI	ACATGT	1 cut(s)	25
Psp6I	CCWGG	5 cut(s)	250, 374, 517, 532, 576
PspGI	CCWGG	5 cut(s)	250, 374, 517, 532, 576
PspN4I	GGNNCC	6 cut(s)	163, 211, 256, 343, 418, 582
PspOMI	GGGCCC	1 cut(s)	580
PspPI	GGNCC	5 cut(s)	342, 521, 574, 580, 581
PsuI	RGATCY	2 cut(s)	115, 161
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	538
SatI	GCNGC	9 cut(s)	75, 78, 85, 151, 316, 386, 391, 415, 443
Sau3AI	GATC	2 cut(s)	115, 161
Sau96I	GGNCC	5 cut(s)	342, 521, 574, 580, 581
ScaI	AGTACT	1 cut(s)	51
ScrFI	CCNGG	8 cut(s)	39, 166, 252, 376, 456, 519, 534, 578
SduI	GDGCHC	1 cut(s)	584
SetI	ASST	7 cut(s)	34, 65, 89, 238, 324, 432, 485
SsiI	CCGC	8 cut(s)	78, 248, 313, 390, 414, 450, 530, 567
SspMI	CTAG	2 cut(s)	237, 291
StyD4I	CCNGG	8 cut(s)	37, 164, 250, 374, 454, 517, 532, 576
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	2 cut(s)	324, 432
TaqI	TCGA	3 cut(s)	216, 486, 539
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	3 cut(s)	80, 393, 417
TfiI	GAWTC	1 cut(s)	123
TseFI	GTSAC	3 cut(s)	286, 421, 430
TseI	GCWGC	6 cut(s)	74, 84, 150, 315, 385, 442
Tsp45I	GTSAC	3 cut(s)	286, 421, 430
TspDTI	ATGAA	3 cut(s)	110, 146, 189
Van91I	CCANNNNNTGG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	34, 539
XspI	CTAG	2 cut(s)	237, 291
ZrmI	AGTACT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.