Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Forward (+)

1344220 .. 1346408

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGTCGAATCCGTGGTGGGCTGGTCAGGTGGGTTTAACCGGAGGACTGAAACACGAAGGCTCAGCTGGCAGTAGCTCTCCGATGACGTTAATGAAACCAGATCTGGGAATCTCCATGAACAACAGCTCCACCAGCCACCTCCTGGGTGGTGGGGGTGGATCAGGATCAGCCGGGGACGAAGATGATGACAGGGACAACGTCAGCGGCGACGACCCCAAGGAGGGGGCCATCGAAGTCTCAGGCAGCAACAGGCGCCCGAGAGGGCGCCCTCCGGGGTCTAAAAACAAGCCGAAACCTCCCATCTTTGTCACAAGGGACAGCCCCAACGCCCTCCGGAGCCACGTCATGGAGATCGCCAACGGCGCCGACATAGCTGAGAGCGTGGCGCAGTTCGCTAGGGCGAGGCAGAGAGGCGTCTGTGTGATGAGTGGAAGCGGAACCGTCACCAACGTCACGCTAAGGCAGCCTTCAGCTCCCGGAGCGGTCATGGCCCTCCATGGAAGGTTCGAGATTCTTTCCCTGACCGGAGCGTTTCTTCCCGGGCCAGCACCGCCGGGGGCGACCGGAATGACGATATACTTGGCCGGCGGGCAGGGGCAGGTCGTCGGAGGAAGCGTGGTGGGACCTCTTGTAGCTTCAGGACCGGTCATGGTAATAGCAGCCACTTTCTCTAATGCTACTTATGAAAGACTGCCCTTGGATCAAGAGGAGGATGATCAGCCGCCTGCTCCGAATTCGGGGCAGCCGGGTGGAGGTGGCTCATCGCCACCCGGTATTGGTGGAAGTTTGGGAGATCCGAATTCATCTATGCCGCCCGGGGTTTACAATTTGCCACCAAGTTTGGTTCCCAACGGCGGAGGGCAGTTGAGCCATGAAGCATATTCAAATTGGGCTCATGGTGGAGGTAGACCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

307

Amino Acids

30.81

Weight (kDa)

5.66

Isoelectric Point (pI)

46.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	112 - 224	2.4e-24	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	589
AccB1I	GGYRCC	3 cut(s)	252, 264, 362
AccB7I	CCANNNNNTGG	2 cut(s)	142, 346
AccBSI	CCGCTC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	907
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	8 cut(s)	204, 435, 482, 551, 588, 722, 812, 855
AclWI	GGATC	4 cut(s)	166, 172, 708, 788
AcoI	YGGCCR	1 cut(s)	582
AcsI	RAATTY	2 cut(s)	733, 799
AcuI	CTGAAG	2 cut(s)	453, 621
AcyI	GRCGYC	4 cut(s)	253, 265, 363, 414
AgeI	ACCGGT	1 cut(s)	643
AgsI	TTSAA	1 cut(s)	885
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	141
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	65, 75, 126, 374, 473, 635
AluI	AGCT	6 cut(s)	65, 75, 126, 374, 473, 635
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	4 cut(s)	166, 172, 708, 788
Ama87I	CYCGRG	3 cut(s)	256, 539, 815
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	4 cut(s)	225, 489, 542, 582
ApeKI	GCWGC	4 cut(s)	243, 463, 659, 742
ApoI	RAATTY	2 cut(s)	733, 799
AsiGI	ACCGGT	1 cut(s)	643
AspLEI	GCGC	4 cut(s)	255, 267, 365, 388
AspS9I	GGNCC	5 cut(s)	225, 490, 542, 623, 641
AsuHPI	GGTGA	1 cut(s)	436
AvaI	CYCGRG	3 cut(s)	256, 539, 815
AvaII	GGWCC	2 cut(s)	623, 641
BanI	GGYRCC	3 cut(s)	252, 264, 362
BanII	GRGCYC	1 cut(s)	895
BbvI	GCAGC	4 cut(s)	255, 475, 671, 754
BccI	CCATC	2 cut(s)	236, 308
BceAI	ACGGC	2 cut(s)	376, 868
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	396
BfoI	RGCGCY	3 cut(s)	256, 268, 366
BfuAI	ACCTGC	1 cut(s)	589
BglII	AGATCT	1 cut(s)	100
BisI	GCNGC	7 cut(s)	205, 244, 464, 660, 722, 743, 812
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	7 cut(s)	206, 245, 465, 661, 723, 744, 813
Bme18I	GGWCC	2 cut(s)	623, 641
BmeT110I	CYCGRG	3 cut(s)	256, 539, 815
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	5 cut(s)	225, 490, 542, 623, 641
BmiI	GGNNCC	8 cut(s)	226, 254, 266, 338, 364, 439, 624, 846
Bpu10I	CCTNAGC	1 cut(s)	458
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaBI	GATNNNNATC	1 cut(s)	163
BsaHI	GRCGYC	4 cut(s)	253, 265, 363, 414
BsaWI	WCCGGW	5 cut(s)	38, 333, 524, 563, 643
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 600, 630
Bse118I	RCCGGY	2 cut(s)	584, 643
Bse8I	GATNNNNATC	1 cut(s)	163
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	143
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	163
BseMII	CTCAG	3 cut(s)	75, 252, 366
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	4 cut(s)	255, 475, 671, 754
Bsh1285I	CGRYCG	1 cut(s)	564
BshFI	GGCC	4 cut(s)	227, 491, 544, 584
BshNI	GGYRCC	3 cut(s)	252, 264, 362
BshTI	ACCGGT	1 cut(s)	643
BsiEI	CGRYCG	1 cut(s)	564
BsiHKCI	CYCGRG	3 cut(s)	256, 539, 815
BslFI	GGGAC	4 cut(s)	188, 206, 329, 636
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	4 cut(s)	188, 206, 329, 636
BsnI	GGCC	4 cut(s)	227, 491, 544, 584
BsoBI	CYCGRG	3 cut(s)	256, 539, 815
Bsp1286I	GDGCHC	1 cut(s)	895
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
Bsp1720I	GCTNAGC	1 cut(s)	61
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	8 cut(s)	204, 435, 482, 551, 588, 722, 812, 855
BspANI	GGCC	4 cut(s)	227, 491, 544, 584
BspCNI	CTCAG	3 cut(s)	74, 251, 367
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	8 cut(s)	226, 254, 266, 338, 364, 439, 624, 846
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	4 cut(s)	166, 172, 708, 788
BspT107I	GGYRCC	3 cut(s)	252, 264, 362
BsrBI	CCGCTC	1 cut(s)	482
BsrFI	RCCGGY	2 cut(s)	584, 643
BssAI	RCCGGY	2 cut(s)	584, 643
BssMI	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
BssNI	GRCGYC	4 cut(s)	253, 265, 363, 414
BssT1I	CCWWGG	3 cut(s)	216, 496, 696
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	442
BstACI	GRCGYC	4 cut(s)	253, 265, 363, 414
BstC8I	GCNNGC	5 cut(s)	67, 546, 586, 590, 726
BstDEI	CTNAG	4 cut(s)	61, 238, 375, 458
BstDSI	CCRYGG	2 cut(s)	11, 496
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	3 cut(s)	256, 268, 366
BstHHI	GCGC	4 cut(s)	255, 267, 365, 388
BstKTI	GATC	7 cut(s)	103, 161, 167, 354, 703, 718, 796
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
BstMCI	CGRYCG	1 cut(s)	564
BstNI	CCWGG	1 cut(s)	143
BstV1I	GCAGC	4 cut(s)	255, 475, 671, 754
BstX2I	RGATCY	2 cut(s)	100, 793
BstYI	RGATCY	2 cut(s)	100, 793
BsuRI	GGCC	4 cut(s)	227, 491, 544, 584
BtgI	CCRYGG	2 cut(s)	11, 496
BtgZI	GCGATG	1 cut(s)	747
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	1 cut(s)	718
BveI	ACCTGC	1 cut(s)	589
Cac8I	GCNNGC	5 cut(s)	67, 546, 586, 590, 726
CfoI	GCGC	4 cut(s)	255, 267, 365, 388
Cfr10I	RCCGGY	2 cut(s)	584, 643
Cfr13I	GGNCC	5 cut(s)	225, 490, 542, 623, 641
Cfr9I	CCCGGG	2 cut(s)	539, 815
CseI	GACGC	1 cut(s)	403
CspAI	ACCGGT	1 cut(s)	643
CspCI	CAANNNNNGTGG	2 cut(s)	822, 857
CviAII	CATG	7 cut(s)	115, 346, 487, 497, 649, 872, 896
DdeI	CTNAG	4 cut(s)	61, 238, 375, 458
DinI	GGCGCC	3 cut(s)	254, 266, 364
DpnI	GATC	7 cut(s)	102, 160, 166, 353, 702, 717, 795
DpnII	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
EaeI	YGGCCR	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	870
Eco130I	CCWWGG	3 cut(s)	216, 496, 696
Eco24I	GRGCYC	1 cut(s)	895
Eco47I	GGWCC	2 cut(s)	623, 641
Eco57I	CTGAAG	2 cut(s)	453, 621
Eco88I	CYCGRG	3 cut(s)	256, 539, 815
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRI	GAATTC	2 cut(s)	733, 799
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	3 cut(s)	216, 496, 696
EcoT38I	GRGCYC	1 cut(s)	895
EgeI	GGCGCC	3 cut(s)	254, 266, 364
EheI	GGCGCC	3 cut(s)	254, 266, 364
ErhI	CCWWGG	3 cut(s)	216, 496, 696
FaeI	CATG	7 cut(s)	118, 349, 490, 500, 652, 875, 899
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	4 cut(s)	188, 206, 329, 636
FatI	CATG	7 cut(s)	114, 345, 486, 496, 648, 871, 895
FauI	CCCGC	1 cut(s)	581
FbaI	TGATCA	1 cut(s)	715
FblI	GTMKAC	1 cut(s)	907
Fnu4HI	GCNGC	7 cut(s)	205, 244, 464, 660, 722, 743, 812
FokI	GGATG	1 cut(s)	725
FriOI	GRGCYC	1 cut(s)	895
Fsp4HI	GCNGC	7 cut(s)	205, 244, 464, 660, 722, 743, 812
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	4 cut(s)	254, 266, 364, 387
GluI	GCNGC	7 cut(s)	205, 244, 464, 660, 722, 743, 812
HaeII	RGCGCY	3 cut(s)	256, 268, 366
HaeIII	GGCC	4 cut(s)	227, 491, 544, 584
HgaI	GACGC	1 cut(s)	403
HhaI	GCGC	4 cut(s)	255, 267, 365, 388
Hin1I	GRCGYC	4 cut(s)	253, 265, 363, 414
Hin1II	CATG	7 cut(s)	118, 349, 490, 500, 652, 875, 899
Hin6I	GCGC	4 cut(s)	253, 265, 363, 386
HinP1I	GCGC	4 cut(s)	253, 265, 363, 386
HinfI	GANTC	3 cut(s)	7, 108, 511
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	823, 908
Hpy188I	TCNGA	4 cut(s)	81, 608, 732, 798
Hpy188III	TCNNGA	5 cut(s)	162, 334, 508, 639, 704
Hpy8I	GTNNAC	2 cut(s)	823, 908
Hpy99I	CGWCG	2 cut(s)	212, 608
HpyAV	CCTTC	3 cut(s)	50, 477, 495
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	4 cut(s)	86, 198, 342, 450
HpyF3I	CTNAG	4 cut(s)	61, 238, 375, 458
HpySE526I	ACGT	4 cut(s)	86, 198, 342, 450
Hsp92I	GRCGYC	4 cut(s)	253, 265, 363, 414
Hsp92II	CATG	7 cut(s)	118, 349, 490, 500, 652, 875, 899
HspAI	GCGC	4 cut(s)	253, 265, 363, 386
KasI	GGCGCC	3 cut(s)	252, 264, 362
Kpn2I	TCCGGA	1 cut(s)	333
KroI	GCCGGC	1 cut(s)	584
KroNI	GCCGGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
LmnI	GCTCC	6 cut(s)	131, 336, 478, 479, 527, 733
Lsp1109I	GCAGC	4 cut(s)	255, 475, 671, 754
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	4 cut(s)	86, 198, 342, 450
MaeIII	GTNAC	3 cut(s)	307, 442, 451
MalI	GATC	7 cut(s)	102, 160, 166, 353, 702, 717, 795
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
MboII	GAAGA	2 cut(s)	191, 527
MflI	RGATCY	2 cut(s)	100, 793
MhlI	GDGCHC	1 cut(s)	895
MluCI	AATT	4 cut(s)	733, 799, 826, 886
Mly113I	GGCGCC	3 cut(s)	253, 265, 363
MmeI	TCCRAC	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	584
MseI	TTAA	3 cut(s)	35, 89, 919
MspA1I	CMGCKG	2 cut(s)	65, 204
MvaI	CCWGG	1 cut(s)	143
NaeI	GCCGGC	1 cut(s)	586
NarI	GGCGCC	3 cut(s)	253, 265, 363
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
NgoMIV	GCCGGC	1 cut(s)	584
NlaIII	CATG	7 cut(s)	118, 349, 490, 500, 652, 875, 899
NlaIV	GGNNCC	8 cut(s)	226, 254, 266, 338, 364, 439, 624, 846
NmuCI	GTSAC	3 cut(s)	307, 442, 451
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 612
PdiI	GCCGGC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	7, 108, 511
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	2 cut(s)	142, 346
PfoI	TCCNGGA	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	643
PkrI	GCNGC	7 cut(s)	206, 245, 465, 661, 723, 744, 813
PluTI	GGCGCC	3 cut(s)	256, 268, 366
PpuMI	RGGWCCY	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	8 cut(s)	226, 254, 266, 338, 364, 439, 624, 846
PspPI	GGNCC	5 cut(s)	225, 490, 542, 623, 641
PspPPI	RGGWCCY	1 cut(s)	623
PsuI	RGATCY	2 cut(s)	100, 793
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	35, 89, 919
SatI	GCNGC	7 cut(s)	205, 244, 464, 660, 722, 743, 812
Sau3AI	GATC	7 cut(s)	100, 158, 164, 351, 700, 715, 793
Sau96I	GGNCC	5 cut(s)	225, 490, 542, 623, 641
SduI	GDGCHC	1 cut(s)	895
SfoI	GGCGCC	3 cut(s)	254, 266, 364
SinI	GGWCC	2 cut(s)	623, 641
SmaI	CCCGGG	2 cut(s)	541, 817
Sse9I	AATT	4 cut(s)	733, 799, 826, 886
SsiI	CCGC	8 cut(s)	204, 435, 482, 551, 588, 722, 812, 855
SspDI	GGCGCC	3 cut(s)	252, 264, 362
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	3 cut(s)	216, 496, 696
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	4 cut(s)	89, 201, 345, 453
TaqI	TCGA	3 cut(s)	5, 231, 507
TasI	AATT	4 cut(s)	733, 799, 826, 886
TauI	GCSGC	3 cut(s)	207, 724, 814
TfiI	GAWTC	3 cut(s)	7, 108, 511
Tru1I	TTAA	3 cut(s)	35, 89, 919
Tru9I	TTAA	3 cut(s)	35, 89, 919
TseFI	GTSAC	3 cut(s)	307, 442, 451
TseI	GCWGC	4 cut(s)	243, 463, 659, 742
Tsp45I	GTSAC	3 cut(s)	307, 442, 451
TspDTI	ATGAA	5 cut(s)	107, 131, 699, 792, 888
TspMI	CCCGGG	2 cut(s)	539, 815
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	2 cut(s)	142, 346
VpaK11BI	GGWCC	2 cut(s)	623, 641
XapI	RAATTY	2 cut(s)	733, 799
XcmI	CCANNNNNNNNNTGG	2 cut(s)	139, 143
XmaI	CCCGGG	2 cut(s)	539, 815
XmiI	GTMKAC	1 cut(s)	907
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.