pycom04g20250

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
21780628 .. 21781545
918 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20250.1

Sequence Viewer

Length: 918 bp
ATGGCGAACCGGTGGTGGACTGGACATGTAGGTCTACCGGGAGGAGGAGTAGTGAACGAAACCTCAGCTGTAGCAGCCGCCGGCAGCTCCCCCATGAAAAACATCATCAAACCAGATCTGGGAATCTCCATGAACAACACCGGAACCAGCAGCCTTGGAGGATCCGGCGGTGATGAAGATGATAACAACAGCGACGACCCCAAGGAAGGAGCCATCGAAGTCGCCACGAGACGACCCAGAGGCCGTCCGCCTGGCTCCAAAAACAAGCCCAAACCCCCAATCTTTGTGACTAGAGACAGCCCTAACGCTCTCCGCAGCCACGTCATGGAGATATCCAACGGGGCCGACATCGCTAGCAGCGTAGCCCAGTTCGCCAGGAGAAGGCAGCGCGGCGTCTGTGTCATGAGTGGGAGTGGCACCGTCACCAACGTCACGCTCAGGCAGCCGTCCGCGCCCGGCGCAGTCATGGCGCTTCACGGGAGGTTCGAGATTTTGTCCTTGACTGGGGCGTTTTTGCCTGGCCCTGCACCGCCTGGGTCGACTGGAATGACCATATACTTGGCAGGCGGGCAAGGCCAGGTTGTTGGAGGAAGCGTGGTGGGACCCCTTGTGGCTTCAGGGCCCGTGATGGTGATCGCAGCGACGTTTACAAATGCGACGTATGAGAGGTTGCCGTTGGAGGAGGAAGAAGAGCAAGCAGGAGGGGGTACTAGTTCGGGGACTGCGGCAGGAGGTGTGGGGTCGCCGCCAGGAATTGGCGGTGGTGGGATGGGAGACCCGGCGGCGTTGGCAGGGGTTTATAATTTTCCACCGAATTTGCTTCCGAATGGAGGAGGGCAGACACAGTTGAGCCACGATCAGCAGGCAGCTTATTCATCTTGGGCTCATGGTCAAGGTGGTGGTAGGCCTCCTTTTTAA

Protein Analysis

306

Amino Acids

30.63

Weight (kDa)

6.52

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 105 - 218 1.5e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 801
AasI GACNNNNNNGTC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 2 cut(s) 325, 755
AccI GTMKAC 2 cut(s) 34, 539
AccII CGCG 2 cut(s) 390, 452
AclWI GGATC 2 cut(s) 156, 169
AcsI RAATTY 1 cut(s) 814
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 8 cut(s) 44, 119, 206, 325, 381, 504, 755, 830
AflIII ACRYGT 1 cut(s) 25
AgeI ACCGGT 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 710
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 6 cut(s) 250, 374, 517, 532, 576, 748
AluBI AGCT 3 cut(s) 68, 87, 869
AluI AGCT 3 cut(s) 68, 87, 869
Alw26I GTCTC 3 cut(s) 223, 288, 768
AlwI GGATC 2 cut(s) 156, 169
AoxI GGCC 6 cut(s) 241, 342, 520, 574, 620, 905
ApaI GGGCCC 1 cut(s) 624
ApeKI GCWGC 9 cut(s) 74, 84, 150, 315, 357, 385, 442, 638, 866
ApoI RAATTY 1 cut(s) 814
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 4 cut(s) 390, 454, 461, 472
AspS9I GGNCC 5 cut(s) 342, 521, 602, 620, 621
AsuC2I CCSGG 3 cut(s) 39, 456, 779
AsuHPI GGTGA 3 cut(s) 182, 415, 643
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 624
BamHI GGATCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 416
BanII GRGCYC 2 cut(s) 624, 886
BauI CACGAG 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 9 cut(s) 86, 96, 162, 327, 369, 397, 454, 650, 878
BccI CCATC 3 cut(s) 221, 622, 763
BceAI ACGGC 3 cut(s) 228, 430, 658
BciT130I CCWGG 6 cut(s) 252, 376, 519, 534, 578, 750
BcnI CCSGG 3 cut(s) 39, 456, 779
BcoDI GTCTC 3 cut(s) 223, 288, 768
BcuI ACTAGT 1 cut(s) 710
BfaI CTAG 3 cut(s) 291, 354, 711
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 473
BglII AGATCT 1 cut(s) 115
Bme1390I CCNGG 9 cut(s) 39, 252, 376, 456, 519, 534, 578, 750, 779
Bme18I GGWCC 1 cut(s) 602
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 5 cut(s) 342, 521, 602, 620, 621
BmiI GGNNCC 9 cut(s) 145, 163, 211, 256, 343, 418, 603, 604, 622
BmrFI CCNGG 9 cut(s) 39, 252, 376, 456, 519, 534, 578, 750, 779
BmrI ACTGGG 2 cut(s) 361, 513
BmtI GCTAGC 1 cut(s) 357
BmuI ACTGGG 2 cut(s) 361, 513
Bpu10I CCTNAGC 2 cut(s) 64, 437
BpuMI CCSGG 3 cut(s) 39, 456, 779
BsaBI GATNNNNATC 1 cut(s) 632
BsaHI GRCGYC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 768
BsaJI CCNNGG 3 cut(s) 154, 201, 533
BsaWI WCCGGW 2 cut(s) 9, 140
BsaXI ACNNNNNCTCC 6 cut(s) 33, 36, 63, 66, 579, 609
Bsc4I CCNNNNNNNGG 8 cut(s) 44, 119, 206, 325, 381, 504, 755, 830
Bse118I RCCGGY 2 cut(s) 9, 80
Bse1I ACTGG 4 cut(s) 25, 367, 508, 547
Bse8I GATNNNNATC 1 cut(s) 632
BseBI CCWGG 6 cut(s) 252, 376, 519, 534, 578, 750
BseDI CCNNGG 3 cut(s) 154, 201, 533
BseGI GGATG 1 cut(s) 774
BseJI GATNNNNATC 1 cut(s) 632
BseLI CCNNNNNNNGG 8 cut(s) 44, 119, 206, 325, 381, 504, 755, 830
BseMII CTCAG 2 cut(s) 78, 451
BseNI ACTGG 4 cut(s) 25, 367, 508, 547
BseRI GAGGAG 4 cut(s) 57, 60, 695, 846
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 9 cut(s) 86, 96, 162, 327, 369, 397, 454, 650, 878
BsgI GTGCAG 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 390, 452
BshFI GGCC 6 cut(s) 243, 344, 522, 576, 622, 907
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 9
BsiSI CCGG 7 cut(s) 10, 38, 81, 141, 165, 456, 779
BslFI GGGAC 2 cut(s) 615, 733
BslI CCNNNNNNNGG 8 cut(s) 44, 119, 206, 325, 381, 504, 755, 830
BsmAI GTCTC 3 cut(s) 223, 288, 768
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 2 cut(s) 615, 733
BsnI GGCC 6 cut(s) 243, 344, 522, 576, 622, 907
Bso31I GGTCTC 1 cut(s) 768
Bsp120I GGGCCC 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 624, 886
Bsp143I GATC 4 cut(s) 115, 161, 633, 856
BspANI GGCC 6 cut(s) 243, 344, 522, 576, 622, 907
BspCNI CTCAG 2 cut(s) 77, 450
BspFNI CGCG 2 cut(s) 390, 452
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 9 cut(s) 145, 163, 211, 256, 343, 418, 603, 604, 622
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 2 cut(s) 156, 169
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 768
BsrFI RCCGGY 2 cut(s) 9, 80
BsrI ACTGG 4 cut(s) 25, 367, 508, 547
BssAI RCCGGY 2 cut(s) 9, 80
BssECI CCNNGG 3 cut(s) 154, 201, 533
BssMI GATC 4 cut(s) 115, 161, 633, 856
BssNI GRCGYC 1 cut(s) 393
BssSI CACGAG 1 cut(s) 226
BssT1I CCWWGG 2 cut(s) 154, 201
Bst2BI CACGAG 1 cut(s) 226
Bst2UI CCWGG 6 cut(s) 252, 376, 519, 534, 578, 750
Bst4CI ACNGT 2 cut(s) 421, 846
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 393
BstC8I GCNNGC 6 cut(s) 82, 355, 565, 569, 696, 864
BstDEI CTNAG 2 cut(s) 64, 437
BstF5I GGATG 1 cut(s) 774
BstFNI CGCG 2 cut(s) 390, 452
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 4 cut(s) 390, 454, 461, 472
BstKTI GATC 4 cut(s) 118, 164, 636, 859
BstMAI GTCTC 3 cut(s) 223, 288, 768
BstMBI GATC 4 cut(s) 115, 161, 633, 856
BstMWI GCNNNNNNNGC 9 cut(s) 74, 350, 371, 442, 451, 458, 467, 573, 788
BstNI CCWGG 6 cut(s) 252, 376, 519, 534, 578, 750
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 9 cut(s) 37, 250, 374, 454, 517, 532, 576, 748, 777
BstSFI CTRYAG 1 cut(s) 69
BstSLI GKGCMC 1 cut(s) 624
BstUI CGCG 2 cut(s) 390, 452
BstV1I GCAGC 9 cut(s) 86, 96, 162, 327, 369, 397, 454, 650, 878
BstX2I RGATCY 2 cut(s) 115, 161
BstXI CCANNNNNNTGG 2 cut(s) 559, 584
BstYI RGATCY 2 cut(s) 115, 161
BsuRI GGCC 6 cut(s) 243, 344, 522, 576, 622, 907
BtgZI GCGATG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 774
Cac8I GCNNGC 6 cut(s) 82, 355, 565, 569, 696, 864
CciI TCATGA 1 cut(s) 402
CfoI GCGC 4 cut(s) 390, 454, 461, 472
Cfr10I RCCGGY 2 cut(s) 9, 80
Cfr13I GGNCC 5 cut(s) 342, 521, 602, 620, 621
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 708
CspAI ACCGGT 1 cut(s) 9
CspCI CAANNNNNGTGG 2 cut(s) 798, 833
CviAII CATG 7 cut(s) 26, 94, 130, 325, 403, 466, 887
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 2 cut(s) 64, 437
DpnI GATC 4 cut(s) 117, 163, 635, 858
DpnII GATC 4 cut(s) 115, 161, 633, 856
DrdI GACNNNNNNGTC 1 cut(s) 30
DseDI GACNNNNNNGTC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
EciI GGCGGA 1 cut(s) 237
Eco130I CCWWGG 2 cut(s) 154, 201
Eco147I AGGCCT 1 cut(s) 907
Eco24I GRGCYC 2 cut(s) 624, 886
Eco31I GGTCTC 1 cut(s) 768
Eco32I GATATC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 602
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 2 cut(s) 602, 620
EcoRII CCWGG 6 cut(s) 250, 374, 517, 532, 576, 748
EcoRV GATATC 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 154, 201
EcoT38I GRGCYC 2 cut(s) 624, 886
ErhI CCWWGG 2 cut(s) 154, 201
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 7 cut(s) 29, 97, 133, 328, 406, 469, 890
FaqI GGGAC 2 cut(s) 615, 733
FatI CATG 7 cut(s) 25, 93, 129, 324, 402, 465, 886
FauI CCCGC 1 cut(s) 560
FblI GTMKAC 2 cut(s) 34, 539
FokI GGATG 1 cut(s) 781
FriOI GRGCYC 2 cut(s) 624, 886
FspBI CTAG 3 cut(s) 291, 354, 711
GlaI GCGC 4 cut(s) 389, 453, 460, 471
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 6 cut(s) 243, 344, 522, 576, 622, 907
HapII CCGG 7 cut(s) 10, 38, 81, 141, 165, 456, 779
HgaI GACGC 1 cut(s) 382
HhaI GCGC 4 cut(s) 390, 454, 461, 472
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 7 cut(s) 29, 97, 133, 328, 406, 469, 890
Hin6I GCGC 4 cut(s) 388, 452, 459, 470
HinP1I GCGC 4 cut(s) 388, 452, 459, 470
HincII GTYRAC 1 cut(s) 540
HindII GTYRAC 1 cut(s) 540
HinfI GANTC 1 cut(s) 123
HpaII CCGG 7 cut(s) 10, 38, 81, 141, 165, 456, 779
HphI GGTGA 3 cut(s) 182, 415, 643
Hpy166II GTNNAC 5 cut(s) 18, 35, 55, 540, 648
Hpy188I TCNGA 1 cut(s) 825
Hpy188III TCNNGA 2 cut(s) 403, 487
Hpy8I GTNNAC 5 cut(s) 18, 35, 55, 540, 648
Hpy99I CGWCG 3 cut(s) 197, 646, 661
HpyAV CCTTC 2 cut(s) 200, 375
HpyCH4III ACNGT 2 cut(s) 421, 846
HpyCH4IV ACGT 4 cut(s) 321, 429, 644, 659
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 9 cut(s) 74, 350, 371, 442, 451, 458, 467, 573, 788
HpyF3I CTNAG 2 cut(s) 64, 437
HpySE526I ACGT 4 cut(s) 321, 429, 644, 659
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 7 cut(s) 29, 97, 133, 328, 406, 469, 890
HspAI GCGC 4 cut(s) 388, 452, 459, 470
KflI GGGWCCC 1 cut(s) 602
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 115, 161, 633, 856
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 3 cut(s) 92, 209, 260
Lsp1109I GCAGC 9 cut(s) 86, 96, 162, 327, 369, 397, 454, 650, 878
MaeI CTAG 3 cut(s) 291, 354, 711
MaeII ACGT 4 cut(s) 321, 429, 644, 659
MaeIII GTNAC 3 cut(s) 286, 421, 430
MalI GATC 4 cut(s) 117, 163, 635, 858
MboI GATC 4 cut(s) 115, 161, 633, 856
MboII GAAGA 3 cut(s) 188, 698, 701
MflI RGATCY 2 cut(s) 115, 161
MhlI GDGCHC 2 cut(s) 624, 886
MluCI AATT 3 cut(s) 753, 802, 814
MmeI TCCRAC 3 cut(s) 360, 565, 657
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 1 cut(s) 916
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 7 cut(s) 10, 38, 81, 141, 165, 456, 779
MspR9I CCNGG 9 cut(s) 39, 252, 376, 456, 519, 534, 578, 750, 779
MvaI CCWGG 6 cut(s) 252, 376, 519, 534, 578, 750
MvnI CGCG 2 cut(s) 390, 452
MwoI GCNNNNNNNGC 9 cut(s) 74, 350, 371, 442, 451, 458, 467, 573, 788
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 3 cut(s) 39, 456, 779
NdeII GATC 4 cut(s) 115, 161, 633, 856
NgoMIV GCCGGC 1 cut(s) 80
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 7 cut(s) 29, 97, 133, 328, 406, 469, 890
NlaIV GGNNCC 9 cut(s) 145, 163, 211, 256, 343, 418, 603, 604, 622
NmuCI GTSAC 3 cut(s) 286, 421, 430
NspI RCATGY 1 cut(s) 29
PagI TCATGA 1 cut(s) 402
PceI AGGCCT 1 cut(s) 907
PciI ACATGT 1 cut(s) 25
PciSI GCTCTTC 1 cut(s) 684
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 483
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 123
PflMI CCANNNNNTGG 2 cut(s) 325, 755
PinAI ACCGGT 1 cut(s) 9
PpuMI RGGWCCY 1 cut(s) 602
PscI ACATGT 1 cut(s) 25
PsiI TTATAA 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 602
Psp6I CCWGG 6 cut(s) 250, 374, 517, 532, 576, 748
PspGI CCWGG 6 cut(s) 250, 374, 517, 532, 576, 748
PspN4I GGNNCC 9 cut(s) 145, 163, 211, 256, 343, 418, 603, 604, 622
PspOMI GGGCCC 1 cut(s) 620
PspPI GGNCC 5 cut(s) 342, 521, 602, 620, 621
PspPPI RGGWCCY 1 cut(s) 602
PsuI RGATCY 2 cut(s) 115, 161
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SalI GTCGAC 1 cut(s) 538
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 916
Sau3AI GATC 4 cut(s) 115, 161, 633, 856
Sau96I GGNCC 5 cut(s) 342, 521, 602, 620, 621
ScrFI CCNGG 9 cut(s) 39, 252, 376, 456, 519, 534, 578, 750, 779
SduI GDGCHC 2 cut(s) 624, 886
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 1 cut(s) 602
SpeI ACTAGT 1 cut(s) 710
Sse9I AATT 3 cut(s) 753, 802, 814
SseBI AGGCCT 1 cut(s) 907
SspMI CTAG 3 cut(s) 291, 354, 711
StuI AGGCCT 1 cut(s) 907
StyD4I CCNGG 9 cut(s) 37, 250, 374, 454, 517, 532, 576, 748, 777
StyI CCWWGG 2 cut(s) 154, 201
TaaI ACNGT 2 cut(s) 421, 846
TaiI ACGT 4 cut(s) 324, 432, 647, 662
TaqI TCGA 3 cut(s) 216, 486, 539
TasI AATT 3 cut(s) 753, 802, 814
TauI GCSGC 5 cut(s) 80, 393, 728, 748, 785
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 916
Tru9I TTAA 1 cut(s) 916
TseFI GTSAC 3 cut(s) 286, 421, 430
TseI GCWGC 9 cut(s) 74, 84, 150, 315, 357, 385, 442, 638, 866
Tsp45I GTSAC 3 cut(s) 286, 421, 430
TspDTI ATGAA 4 cut(s) 110, 146, 189, 864
Van91I CCANNNNNTGG 2 cut(s) 325, 755
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 1 cut(s) 814
XceI RCATGY 1 cut(s) 29
XmiI GTMKAC 2 cut(s) 34, 539
XspI CTAG 3 cut(s) 291, 354, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.