FvH4_4g03050

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004329
Physical Location & Seq
Reverse (-)
2742884 .. 2743717
834 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g03050.t1

Sequence Viewer

Length: 834 bp
ATGGACCCGGCAGCCAATTCACCAGCAGCCCTAAACAAGCGCGAACTCGAGATTTCCATGAATGAAAACAGCGGCGGCAGAAGTGGCAGAGACGACGACGAAGATAGAGATCAAGGAGATGAGCCTAAAGAAGGAGCCGTCGAGATTGGATCTCGAAGGCCCCGAGGCCGTCCTCCCGGATCCAAAAACAAACCCAAACCGCCCATCTTTGTCACCAGGGACAGCCCCAACTCCCTCAGAAGCCACGTTATGGAAGTCGCCGGCGGTGCTGACGTGGCTGAGAGCGTGGCACAGTTTGCACGGAGGCGTCAGAGAGGTGTTTGTGTACTCAGCGGGAGTGGTTCAGTGGCCAACGTGACACTGAGACAACCTGCTGCCCCAGGTGCCGTTGTAGCACTCCATGGAAGGTTTGAGATCCTGTCCCTGAGCGGAGCGTTCCTGCCTGGACCCGCGCCACCCGGGTCGACAGGCCTGACCGTCTACCTAGCAGGCGGTCAGGGTCAGGTGGTTGGGGGTAGCGTTGTTGGATCACTTGTTGCAGCTGGACCAGTTATGGTGGTGGCTGCTACTTTTGCTAATGCTACTTATGAGAGACTGCCTCTTGAGGAAGATGATGAGGCTGCAAGTGTTGGAGGAGGCCATGGAGCTTCTGGAAGTTCCCCTACTGGAGTTGGAAGTAGTGGCGGTCCTCAGGTACTGCCGCCTGGGCACGGCGGGCAGCTACCTGATCCGTCGTCGCTCCCCCTTTATGGTCTGCCACCCAATCTGATCCCCAACGGCGGGCCGCTCGGGCATGACGCTTATCCCTGGCCTCATTCAAGAGCGCCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

278

Amino Acids

28.07

Weight (kDa)

5.87

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 80 - 192 1.1e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 250
AccBSI CCGCTC 2 cut(s) 429, 787
AccI GTMKAC 2 cut(s) 464, 480
AccII CGCG 2 cut(s) 42, 452
AclWI GGATC 7 cut(s) 157, 174, 187, 409, 535, 722, 763
AcoI YGGCCR 1 cut(s) 348
AcyI GRCGYC 1 cut(s) 307
AfaI GTAC 2 cut(s) 327, 696
AfiI CCNNNNNNNGG 6 cut(s) 131, 250, 710, 749, 779, 780
AgsI TTSAA 1 cut(s) 819
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 5 cut(s) 215, 379, 442, 703, 806
AluBI AGCT 3 cut(s) 542, 647, 721
AluI AGCT 3 cut(s) 542, 647, 721
Alw26I GTCTC 3 cut(s) 84, 358, 586
AlwI GGATC 7 cut(s) 157, 174, 187, 409, 535, 722, 763
AlwNI CAGNNNCTG 1 cut(s) 697
Ama87I CYCGRG 4 cut(s) 47, 162, 458, 788
AoxI GGCC 7 cut(s) 158, 166, 348, 469, 637, 782, 809
ApeKI GCWGC 7 cut(s) 11, 26, 374, 539, 563, 620, 718
AspLEI GCGC 3 cut(s) 42, 454, 826
AspS9I GGNCC 6 cut(s) 4, 159, 446, 545, 686, 782
AsuC2I CCSGG 4 cut(s) 8, 177, 459, 460
AsuHPI GGTGA 2 cut(s) 12, 205
AvaI CYCGRG 4 cut(s) 47, 162, 458, 788
AvaII GGWCC 4 cut(s) 4, 446, 545, 686
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 1 cut(s) 711
BalI TGGCCA 1 cut(s) 350
BamHI GGATCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 383
BarI GAAGNNNNNNTAC 2 cut(s) 646, 678
BbvI GCAGC 7 cut(s) 23, 38, 361, 550, 551, 607, 730
BccI CCATC 1 cut(s) 212
BceAI ACGGC 5 cut(s) 122, 153, 371, 727, 793
BciT130I CCWGG 5 cut(s) 217, 381, 444, 705, 808
BcnI CCSGG 4 cut(s) 8, 177, 459, 460
BcoDI GTCTC 3 cut(s) 84, 358, 586
BfaI CTAG 1 cut(s) 485
BfoI RGCGCY 1 cut(s) 827
BfuAI ACCTGC 1 cut(s) 379
BglI GCCNNNNNGGC 2 cut(s) 706, 790
Bme1390I CCNGG 9 cut(s) 8, 177, 217, 381, 444, 459, 460, 705, 808
Bme18I GGWCC 4 cut(s) 4, 446, 545, 686
BmeT110I CYCGRG 4 cut(s) 47, 162, 458, 788
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 6 cut(s) 4, 159, 446, 545, 686, 782
BmiI GGNNCC 6 cut(s) 6, 136, 161, 181, 385, 448
BmrFI CCNGG 9 cut(s) 8, 177, 217, 381, 444, 459, 460, 705, 808
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 4 cut(s) 8, 177, 459, 460
BsaBI GATNNNNATC 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 307
BsaJI CCNNGG 8 cut(s) 163, 216, 379, 400, 458, 640, 704, 806
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 250, 710, 749, 779, 780
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 2 cut(s) 548, 670
Bse21I CCTNAGG 1 cut(s) 690
Bse8I GATNNNNATC 1 cut(s) 108
BseBI CCWGG 5 cut(s) 217, 381, 444, 705, 808
BseDI CCNNGG 8 cut(s) 163, 216, 379, 400, 458, 640, 704, 806
BseJI GATNNNNATC 1 cut(s) 108
BseLI CCNNNNNNNGG 6 cut(s) 131, 250, 710, 749, 779, 780
BseMII CTCAG 6 cut(s) 250, 270, 343, 353, 416, 704
BseNI ACTGG 2 cut(s) 548, 670
BseRI GAGGAG 1 cut(s) 648
BseSI GKGCMC 1 cut(s) 711
BseXI GCAGC 7 cut(s) 23, 38, 361, 550, 551, 607, 730
Bsh1236I CGCG 2 cut(s) 42, 452
BshFI GGCC 7 cut(s) 160, 168, 350, 471, 639, 784, 811
BshNI GGYRCC 1 cut(s) 383
BsiHKCI CYCGRG 4 cut(s) 47, 162, 458, 788
BsiSI CCGG 4 cut(s) 8, 177, 261, 459
BslFI GGGAC 2 cut(s) 233, 406
BslI CCNNNNNNNGG 6 cut(s) 131, 250, 710, 749, 779, 780
BsmAI GTCTC 3 cut(s) 84, 358, 586
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 233, 406
BsnI GGCC 7 cut(s) 160, 168, 350, 471, 639, 784, 811
BsoBI CYCGRG 4 cut(s) 47, 162, 458, 788
Bsp1286I GDGCHC 1 cut(s) 711
Bsp143I GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
Bsp19I CCATGG 2 cut(s) 400, 640
BspANI GGCC 7 cut(s) 160, 168, 350, 471, 639, 784, 811
BspCNI CTCAG 6 cut(s) 249, 271, 342, 354, 417, 703
BspFNI CGCG 2 cut(s) 42, 452
BspLI GGNNCC 6 cut(s) 6, 136, 161, 181, 385, 448
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 7 cut(s) 157, 174, 187, 409, 535, 722, 763
BspT107I GGYRCC 1 cut(s) 383
BsrBI CCGCTC 2 cut(s) 429, 787
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 2 cut(s) 548, 670
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 8 cut(s) 163, 216, 379, 400, 458, 640, 704, 806
BssMI GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
BssNI GRCGYC 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 400, 640
Bst2UI CCWGG 5 cut(s) 217, 381, 444, 705, 808
Bst4CI ACNGT 2 cut(s) 294, 478
BstACI GRCGYC 1 cut(s) 307
BstAPI GCANNNNNTGC 1 cut(s) 296
BstC8I GCNNGC 4 cut(s) 262, 490, 716, 782
BstDEI CTNAG 6 cut(s) 236, 279, 329, 362, 425, 690
BstDSI CCRYGG 2 cut(s) 400, 640
BstENI CCTNNNNNAGG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 42, 452
BstH2I RGCGCY 1 cut(s) 827
BstHHI GCGC 3 cut(s) 42, 454, 826
BstKTI GATC 7 cut(s) 112, 152, 182, 417, 530, 730, 771
BstMAI GTCTC 3 cut(s) 84, 358, 586
BstMBI GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
BstNI CCWGG 5 cut(s) 217, 381, 444, 705, 808
BstSCI CCNGG 9 cut(s) 6, 175, 215, 379, 442, 457, 458, 703, 806
BstSLI GKGCMC 1 cut(s) 711
BstUI CGCG 2 cut(s) 42, 452
BstV1I GCAGC 7 cut(s) 23, 38, 361, 550, 551, 607, 730
BstX2I RGATCY 3 cut(s) 149, 179, 414
BstYI RGATCY 3 cut(s) 149, 179, 414
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 7 cut(s) 160, 168, 350, 471, 639, 784, 811
BtgI CCRYGG 2 cut(s) 400, 640
BtrI CACGTC 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 351, 359
BveI ACCTGC 1 cut(s) 379
Cac8I GCNNGC 4 cut(s) 262, 490, 716, 782
CaiI CAGNNNCTG 1 cut(s) 697
CfoI GCGC 3 cut(s) 42, 454, 826
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 6 cut(s) 4, 159, 446, 545, 686, 782
Cfr9I CCCGGG 1 cut(s) 458
CseI GACGC 2 cut(s) 296, 806
Csp6I GTAC 2 cut(s) 326, 695
CviAII CATG 4 cut(s) 58, 401, 641, 794
CviQI GTAC 2 cut(s) 326, 695
DdeI CTNAG 6 cut(s) 236, 279, 329, 362, 425, 690
DpnI GATC 7 cut(s) 111, 151, 181, 416, 529, 729, 770
DpnII GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
EaeI YGGCCR 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 400, 640
Eco147I AGGCCT 1 cut(s) 471
Eco47I GGWCC 4 cut(s) 4, 446, 545, 686
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 4 cut(s) 47, 162, 458, 788
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 5 cut(s) 215, 379, 442, 703, 806
EcoT14I CCWWGG 2 cut(s) 400, 640
ErhI CCWWGG 2 cut(s) 400, 640
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 4 cut(s) 61, 404, 644, 797
FaiI YATR 8 cut(s) 59, 251, 402, 554, 588, 642, 750, 795
FalI AAGNNNNNCTT 1 cut(s) 811
FaqI GGGAC 2 cut(s) 233, 406
FatI CATG 4 cut(s) 57, 400, 640, 793
FauI CCCGC 4 cut(s) 326, 457, 707, 773
FblI GTMKAC 2 cut(s) 464, 480
FspBI CTAG 1 cut(s) 485
GlaI GCGC 3 cut(s) 41, 453, 825
GsuI CTGGAG 1 cut(s) 687
HaeII RGCGCY 1 cut(s) 827
HaeIII GGCC 7 cut(s) 160, 168, 350, 471, 639, 784, 811
HapII CCGG 4 cut(s) 8, 177, 261, 459
HgaI GACGC 2 cut(s) 296, 806
HhaI GCGC 3 cut(s) 42, 454, 826
Hin1I GRCGYC 1 cut(s) 307
Hin1II CATG 4 cut(s) 61, 404, 644, 797
Hin6I GCGC 3 cut(s) 40, 452, 824
HinP1I GCGC 3 cut(s) 40, 452, 824
HincII GTYRAC 1 cut(s) 465
HindII GTYRAC 1 cut(s) 465
HpaII CCGG 4 cut(s) 8, 177, 261, 459
HphI GGTGA 2 cut(s) 12, 205
Hpy166II GTNNAC 3 cut(s) 326, 465, 481
Hpy188I TCNGA 3 cut(s) 239, 312, 768
Hpy188III TCNNGA 6 cut(s) 49, 142, 153, 602, 651, 819
Hpy8I GTNNAC 3 cut(s) 326, 465, 481
Hpy99I CGWCG 5 cut(s) 98, 101, 143, 736, 739
HpyAV CCTTC 3 cut(s) 125, 150, 399
HpyCH4III ACNGT 2 cut(s) 294, 478
HpyCH4IV ACGT 3 cut(s) 246, 273, 354
HpyCH4V TGCA 3 cut(s) 299, 539, 623
HpyF3I CTNAG 6 cut(s) 236, 279, 329, 362, 425, 690
HpySE526I ACGT 3 cut(s) 246, 273, 354
Hsp92I GRCGYC 1 cut(s) 307
Hsp92II CATG 4 cut(s) 61, 404, 644, 797
HspAI GCGC 3 cut(s) 40, 452, 824
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
LmnI GCTCC 4 cut(s) 134, 431, 644, 744
Lsp1109I GCAGC 7 cut(s) 23, 38, 361, 550, 551, 607, 730
MaeI CTAG 1 cut(s) 485
MaeII ACGT 3 cut(s) 246, 273, 354
MaeIII GTNAC 2 cut(s) 211, 355
MalI GATC 7 cut(s) 111, 151, 181, 416, 529, 729, 770
MbiI CCGCTC 2 cut(s) 429, 787
MboI GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
MboII GAAGA 2 cut(s) 113, 620
MflI RGATCY 3 cut(s) 149, 179, 414
MhlI GDGCHC 1 cut(s) 711
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 1 cut(s) 16
MluNI TGGCCA 1 cut(s) 350
MmeI TCCRAC 3 cut(s) 505, 610, 652
Mox20I TGGCCA 1 cut(s) 350
MreI CGCCGGCG 1 cut(s) 260
MroNI GCCGGC 1 cut(s) 260
MscI TGGCCA 1 cut(s) 350
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 3 cut(s) 72, 333, 542
MspI CCGG 4 cut(s) 8, 177, 261, 459
MspR9I CCNGG 9 cut(s) 8, 177, 217, 381, 444, 459, 460, 705, 808
MvaI CCWGG 5 cut(s) 217, 381, 444, 705, 808
MvnI CGCG 2 cut(s) 42, 452
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 4 cut(s) 8, 177, 459, 460
NcoI CCATGG 2 cut(s) 400, 640
NdeII GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 61, 404, 644, 797
NlaIV GGNNCC 6 cut(s) 6, 136, 161, 181, 385, 448
NmuCI GTSAC 2 cut(s) 211, 355
PaeR7I CTCGAG 1 cut(s) 47
PceI AGGCCT 1 cut(s) 471
PcsI WCGNNNNNNNCGW 1 cut(s) 160
PdiI GCCGGC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 250
PfoI TCCNGGA 1 cut(s) 175
Psp6I CCWGG 5 cut(s) 215, 379, 442, 703, 806
PspGI CCWGG 5 cut(s) 215, 379, 442, 703, 806
PspN4I GGNNCC 6 cut(s) 6, 136, 161, 181, 385, 448
PspPI GGNCC 6 cut(s) 4, 159, 446, 545, 686, 782
PstNI CAGNNNCTG 1 cut(s) 697
PsuI RGATCY 3 cut(s) 149, 179, 414
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 327, 696
RsaNI GTAC 2 cut(s) 326, 695
SalI GTCGAC 1 cut(s) 463
Sau3AI GATC 7 cut(s) 109, 149, 179, 414, 527, 727, 768
Sau96I GGNCC 6 cut(s) 4, 159, 446, 545, 686, 782
ScrFI CCNGG 9 cut(s) 8, 177, 217, 381, 444, 459, 460, 705, 808
SduI GDGCHC 1 cut(s) 711
Sfr274I CTCGAG 1 cut(s) 47
SgrAI CRCCGGYG 1 cut(s) 260
SinI GGWCC 4 cut(s) 4, 446, 545, 686
SlaI CTCGAG 1 cut(s) 47
SmaI CCCGGG 1 cut(s) 460
SmlI CTYRAG 2 cut(s) 47, 602
SmoI CTYRAG 2 cut(s) 47, 602
Sse9I AATT 1 cut(s) 16
SseBI AGGCCT 1 cut(s) 471
SspMI CTAG 1 cut(s) 485
StuI AGGCCT 1 cut(s) 471
StyD4I CCNGG 9 cut(s) 6, 175, 215, 379, 442, 457, 458, 703, 806
StyI CCWWGG 2 cut(s) 400, 640
TaaI ACNGT 2 cut(s) 294, 478
TaiI ACGT 3 cut(s) 249, 276, 357
TaqI TCGA 4 cut(s) 48, 141, 154, 464
TasI AATT 1 cut(s) 16
TatI WGTACW 1 cut(s) 325
TauI GCSGC 4 cut(s) 75, 78, 703, 787
TscAI CASTG 2 cut(s) 351, 366
TseFI GTSAC 2 cut(s) 211, 355
TseI GCWGC 7 cut(s) 11, 26, 374, 539, 563, 620, 718
Tsp45I GTSAC 2 cut(s) 211, 355
TspDTI ATGAA 2 cut(s) 74, 78
TspGWI ACGGA 2 cut(s) 316, 720
TspMI CCCGGG 1 cut(s) 458
TspRI CASTG 2 cut(s) 351, 366
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 4 cut(s) 4, 446, 545, 686
XagI CCTNNNNNAGG 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 647
XhoI CTCGAG 1 cut(s) 47
XmaI CCCGGG 1 cut(s) 458
XmiI GTMKAC 2 cut(s) 464, 480
XspI CTAG 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.