Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Reverse (-)

29755598 .. 29756515

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G348200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCGAACCGATGGTGGGCTGGACAGGTAGGTCTACCAGGAGGAGTGAATGAAACCTCAGCAGCAGCCACCAACTCTCCAATGAAAAACATCATTAAACCAGATCTGGGAATCTCAATGAACAACAACACCACCGGAACCAGCAGCCTCGGAGGATCAGGCGGCGATGACGATGACGACCGAGACAACAACAGCGACGATCCCAAAGAGGGGGCAATCGAAGTCGCCACCAGACGCCCGAGGGGCCGTCCCCCGGGCTCCAAGAACAAGCCCAAGCCACCCATCTTCGTGACCAGGGACAGCCCTAACGCCCTCCGCAGCCACGTCATGGAGATATCCAACGGAGCCGACATCGCCGACAGCGTCGCCCGGTTCGCCAGAACAAGACAGCGTGGCGTCTGCGTCCTGAGCGGAAGCGGCACCGTCACCAACGTCACAATCAGGCAGGCGTCCCCGGCAGGGTCGGTCATGGCGCTTCACGGAAGGTTCGAGATTCTCTCGTTGACCGGGGCTTTTTTGCCCGGACCGGCACCGCCCGGGTCAACTGGAATGACAATATACTTGGCGGGCGTGCAGGGACAGGTTGTTGGGGGCAGCGTGGTGGGCCCGCTTGTGGCGTCGGGGCCGGTGATGGTGATCGCAGCCACGTTTTCAAATGCGACGTATGAGAGATTGCCGTTGGAGGAGGAAGAAGAGGTGGGTGGTAATAATTCGGGGCAGGCGGCGGGAGGAGGGGGGTCCCCACCGGGGATTGGTGGTAGCGGAGGAGGGATGGGGGACCCGTCGATTGGGGTGGGGGTTTATAACTTGCAGCCGAATATGCTTCCGAATGGAGGAGGACAGGCACTGAGCCATGATCAAGGGGCGGCTTATTCATCTTGGGCGCATGGTCAAGGTGGTGGTAGGGCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

306

Amino Acids

30.72

Weight (kDa)

5.82

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	804
AasI	GACNNNNNNGTC	1 cut(s)	30
AccB1I	GGYRCC	2 cut(s)	419, 529
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccBSI	CCGCTC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	163, 194
AcyI	GRCGYC	4 cut(s)	235, 396, 449, 617
AgsI	TTSAA	1 cut(s)	654
AjiI	CACGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	37, 293
Alw26I	GTCTC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	163, 194
AlwNI	CAGNNNCTG	1 cut(s)	847
Ama87I	CYCGRG	3 cut(s)	238, 253, 536
AoxI	GGCC	3 cut(s)	244, 604, 623
ApaI	GGGCCC	1 cut(s)	608
ApeKI	GCWGC	7 cut(s)	62, 65, 144, 318, 594, 641, 811
AspLEI	GCGC	2 cut(s)	475, 886
AspS9I	GGNCC	7 cut(s)	244, 524, 604, 605, 623, 738, 778
AsuC2I	CCSGG	9 cut(s)	254, 255, 370, 455, 508, 522, 537, 538, 747
AsuHPI	GGTGA	3 cut(s)	418, 640, 646
AvaI	CYCGRG	3 cut(s)	238, 253, 536
AvaII	GGWCC	3 cut(s)	524, 738, 778
BaeGI	GKGCMC	1 cut(s)	608
BanI	GGYRCC	2 cut(s)	419, 529
BanII	GRGCYC	3 cut(s)	260, 608, 910
BbvCI	CCTCAGC	1 cut(s)	58
BbvI	GCAGC	7 cut(s)	74, 77, 156, 330, 606, 653, 823
BccI	CCATC	4 cut(s)	6, 290, 625, 766
BceAI	ACGGC	2 cut(s)	231, 661
BciT130I	CCWGG	2 cut(s)	39, 295
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	9 cut(s)	254, 255, 370, 455, 508, 522, 537, 538, 747
BcoDI	GTCTC	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	476
BglI	GCCNNNNNGGC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	103
Bme18I	GGWCC	3 cut(s)	524, 738, 778
BmeT110I	CYCGRG	3 cut(s)	238, 253, 536
BmgBI	CACGTC	1 cut(s)	325
BmgT120I	GGNCC	7 cut(s)	244, 524, 604, 605, 623, 738, 778
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bpu10I	CCTNAGC	2 cut(s)	58, 407
BpuMI	CCSGG	9 cut(s)	254, 255, 370, 455, 508, 522, 537, 538, 747
BsaBI	GATNNNNATC	1 cut(s)	635
BsaHI	GRCGYC	4 cut(s)	235, 396, 449, 617
BsaJI	CCNNGG	9 cut(s)	148, 239, 252, 253, 294, 453, 507, 536, 746
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bse118I	RCCGGY	2 cut(s)	526, 625
Bse1I	ACTGG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	635
BseBI	CCWGG	2 cut(s)	39, 295
BseDI	CCNNGG	9 cut(s)	148, 239, 252, 253, 294, 453, 507, 536, 746
BseGI	GGATG	1 cut(s)	777
BseJI	GATNNNNATC	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	72, 398, 839
BseNI	ACTGG	1 cut(s)	550
BseRI	GAGGAG	5 cut(s)	57, 698, 744, 780, 849
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	7 cut(s)	74, 77, 156, 330, 606, 653, 823
BsgI	GTGCAG	1 cut(s)	593
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	246, 606, 625
BshNI	GGYRCC	2 cut(s)	419, 529
BsiEI	CGRYCG	1 cut(s)	181
BsiHKCI	CYCGRG	3 cut(s)	238, 253, 536
BslFI	GGGAC	6 cut(s)	234, 311, 436, 591, 724, 791
BsmAI	GTCTC	1 cut(s)	177
BsmFI	GGGAC	6 cut(s)	234, 311, 436, 591, 724, 791
BsnI	GGCC	3 cut(s)	246, 606, 625
BsoBI	CYCGRG	3 cut(s)	238, 253, 536
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	3 cut(s)	260, 608, 910
Bsp143I	GATC	5 cut(s)	103, 155, 199, 636, 856
BspANI	GGCC	3 cut(s)	246, 606, 625
BspCNI	CTCAG	3 cut(s)	71, 399, 840
BspPI	GGATC	2 cut(s)	163, 194
BspT107I	GGYRCC	2 cut(s)	419, 529
BsrBI	CCGCTC	1 cut(s)	411
BsrFI	RCCGGY	2 cut(s)	526, 625
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	2 cut(s)	526, 625
BssECI	CCNNGG	9 cut(s)	148, 239, 252, 253, 294, 453, 507, 536, 746
BssMI	GATC	5 cut(s)	103, 155, 199, 636, 856
BssNI	GRCGYC	4 cut(s)	235, 396, 449, 617
Bst2UI	CCWGG	2 cut(s)	39, 295
Bst4CI	ACNGT	1 cut(s)	424
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	4 cut(s)	235, 396, 449, 617
BstC8I	GCNNGC	5 cut(s)	447, 568, 572, 608, 720
BstDEI	CTNAG	3 cut(s)	58, 407, 848
BstF5I	GGATG	1 cut(s)	777
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	2 cut(s)	475, 886
BstKTI	GATC	5 cut(s)	106, 158, 202, 639, 859
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	5 cut(s)	103, 155, 199, 636, 856
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	8 cut(s)	243, 353, 374, 408, 417, 455, 603, 820
BstNI	CCWGG	2 cut(s)	39, 295
BstSLI	GKGCMC	1 cut(s)	608
BstV1I	GCAGC	7 cut(s)	74, 77, 156, 330, 606, 653, 823
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	246, 606, 625
BtgZI	GCGATG	2 cut(s)	180, 337
BtrI	CACGTC	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	777
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	5 cut(s)	447, 568, 572, 608, 720
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	2 cut(s)	475, 886
Cfr10I	RCCGGY	2 cut(s)	526, 625
Cfr13I	GGNCC	7 cut(s)	244, 524, 604, 605, 623, 738, 778
Cfr9I	CCCGGG	2 cut(s)	253, 536
CpoI	CGGWCCG	1 cut(s)	524
CseI	GACGC	6 cut(s)	243, 352, 385, 391, 438, 606
CspI	CGGWCCG	1 cut(s)	524
CviAII	CATG	4 cut(s)	328, 469, 854, 887
DdeI	CTNAG	3 cut(s)	58, 407, 848
DpnI	GATC	5 cut(s)	105, 157, 201, 638, 858
DpnII	GATC	5 cut(s)	103, 155, 199, 636, 856
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco24I	GRGCYC	3 cut(s)	260, 608, 910
Eco32I	GATATC	1 cut(s)	336
Eco47I	GGWCC	3 cut(s)	524, 738, 778
Eco88I	CYCGRG	3 cut(s)	238, 253, 536
EcoO109I	RGGNCCY	2 cut(s)	738, 778
EcoRII	CCWGG	2 cut(s)	37, 293
EcoRV	GATATC	1 cut(s)	336
EcoT38I	GRGCYC	3 cut(s)	260, 608, 910
FaeI	CATG	4 cut(s)	331, 472, 857, 890
FaiI	YATR	8 cut(s)	329, 470, 559, 666, 804, 821, 855, 888
FaqI	GGGAC	6 cut(s)	234, 311, 436, 591, 724, 791
FatI	CATG	4 cut(s)	327, 468, 853, 886
FauI	CCCGC	3 cut(s)	559, 615, 718
FbaI	TGATCA	1 cut(s)	856
FblI	GTMKAC	1 cut(s)	34
FokI	GGATG	1 cut(s)	784
FriOI	GRGCYC	3 cut(s)	260, 608, 910
GlaI	GCGC	2 cut(s)	474, 885
HaeII	RGCGCY	1 cut(s)	476
HaeIII	GGCC	3 cut(s)	246, 606, 625
HgaI	GACGC	6 cut(s)	243, 352, 385, 391, 438, 606
HhaI	GCGC	2 cut(s)	475, 886
Hin1I	GRCGYC	4 cut(s)	235, 396, 449, 617
Hin1II	CATG	4 cut(s)	331, 472, 857, 890
Hin6I	GCGC	2 cut(s)	473, 884
HinP1I	GCGC	2 cut(s)	473, 884
HincII	GTYRAC	2 cut(s)	504, 543
HindII	GTYRAC	2 cut(s)	504, 543
HinfI	GANTC	2 cut(s)	111, 493
HphI	GGTGA	3 cut(s)	418, 640, 646
Hpy166II	GTNNAC	3 cut(s)	35, 504, 543
Hpy188I	TCNGA	2 cut(s)	152, 828
Hpy188III	TCNNGA	3 cut(s)	289, 406, 490
Hpy8I	GTNNAC	3 cut(s)	35, 504, 543
Hpy99I	CGWCG	5 cut(s)	200, 368, 622, 664, 787
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	1 cut(s)	424
HpyCH4IV	ACGT	4 cut(s)	324, 432, 647, 662
HpyCH4V	TGCA	2 cut(s)	574, 811
HpyF10VI	GCNNNNNNNGC	8 cut(s)	243, 353, 374, 408, 417, 455, 603, 820
HpyF3I	CTNAG	3 cut(s)	58, 407, 848
HpySE526I	ACGT	4 cut(s)	324, 432, 647, 662
Hsp92I	GRCGYC	4 cut(s)	235, 396, 449, 617
Hsp92II	CATG	4 cut(s)	331, 472, 857, 890
HspAI	GCGC	2 cut(s)	473, 884
KflI	GGGWCCC	2 cut(s)	738, 778
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	5 cut(s)	103, 155, 199, 636, 856
LmnI	GCTCC	3 cut(s)	263, 344, 913
Lsp1109I	GCAGC	7 cut(s)	74, 77, 156, 330, 606, 653, 823
MaeII	ACGT	4 cut(s)	324, 432, 647, 662
MaeIII	GTNAC	3 cut(s)	289, 424, 433
MalI	GATC	5 cut(s)	105, 157, 201, 638, 858
MbiI	CCGCTC	1 cut(s)	411
MboI	GATC	5 cut(s)	103, 155, 199, 636, 856
MboII	GAAGA	3 cut(s)	277, 701, 704
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	3 cut(s)	260, 608, 910
MluCI	AATT	1 cut(s)	709
MmeI	TCCRAC	2 cut(s)	363, 660
MseI	TTAA	2 cut(s)	96, 916
MslI	CAYNNNNRTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	39, 295
MwoI	GCNNNNNNNGC	8 cut(s)	243, 353, 374, 408, 417, 455, 603, 820
NciI	CCSGG	9 cut(s)	254, 255, 370, 455, 508, 522, 537, 538, 747
NdeII	GATC	5 cut(s)	103, 155, 199, 636, 856
NlaIII	CATG	4 cut(s)	331, 472, 857, 890
NmuCI	GTSAC	3 cut(s)	289, 424, 433
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 486
PfeI	GAWTC	2 cut(s)	111, 493
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	328
PpuMI	RGGWCCY	2 cut(s)	738, 778
PsiI	TTATAA	1 cut(s)	804
Psp5II	RGGWCCY	2 cut(s)	738, 778
Psp6I	CCWGG	2 cut(s)	37, 293
PspGI	CCWGG	2 cut(s)	37, 293
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	7 cut(s)	244, 524, 604, 605, 623, 738, 778
PspPPI	RGGWCCY	2 cut(s)	738, 778
PstNI	CAGNNNCTG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	362
RseI	CAYNNNNRTG	1 cut(s)	287
Rsr2I	CGGWCCG	1 cut(s)	524
RsrII	CGGWCCG	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	96, 916
Sau3AI	GATC	5 cut(s)	103, 155, 199, 636, 856
Sau96I	GGNCC	7 cut(s)	244, 524, 604, 605, 623, 738, 778
SduI	GDGCHC	3 cut(s)	260, 608, 910
SinI	GGWCC	3 cut(s)	524, 738, 778
SmaI	CCCGGG	2 cut(s)	255, 538
SmiMI	CAYNNNNRTG	1 cut(s)	287
Sse9I	AATT	1 cut(s)	709
TaaI	ACNGT	1 cut(s)	424
TaiI	ACGT	4 cut(s)	327, 435, 650, 665
TaqI	TCGA	3 cut(s)	219, 489, 785
TaqII	GACCGA	2 cut(s)	195, 454
TasI	AATT	1 cut(s)	709
TauI	GCSGC	4 cut(s)	165, 420, 725, 869
TfiI	GAWTC	2 cut(s)	111, 493
Tru1I	TTAA	2 cut(s)	96, 916
Tru9I	TTAA	2 cut(s)	96, 916
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	3 cut(s)	289, 424, 433
TseI	GCWGC	7 cut(s)	62, 65, 144, 318, 594, 641, 811
Tsp45I	GTSAC	3 cut(s)	289, 424, 433
TspDTI	ATGAA	4 cut(s)	66, 98, 134, 864
TspGWI	ACGGA	2 cut(s)	357, 495
TspMI	CCCGGG	2 cut(s)	253, 536
TspRI	CASTG	1 cut(s)	852
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	3 cut(s)	524, 738, 778
XmaI	CCCGGG	2 cut(s)	253, 536
XmiI	GTMKAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.