Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005322.1

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Reverse (-)

121516 .. 122364

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005322.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggacccggcagccaattcaccagcagcgctaaacaagcgagaactcgagatttccatgaacgaaaacagcggcggcagaagcagtggcggtggcagagacgacgacgaagatagagatcaaggagaagagcctaaagaaggggccgtcgagattggatctcgaaggccccgaggccgccctcccggatccaaaaacaaacccaaaccgcccatcttcgtgaccagggacagccccaactcccttagaagccacgtgatggaagttgccggcggtgctgacgtggcggagagcgtggcacaattcgcacggaggcgtcagagaggtgtttgcgtgctcagcgggagtggctcagtggccaacgtgacactgagacaacccgctgcccccggggccgttgtagcactccatggaaggttcgagatcctgtccctgagcggagcgtttctgccaggacctgctccgcccgggtcgacaggcctgaccgtctacctagcaggcggtcagggtcaggtggttgggggaagcgttgttggatcacttgttgcggctggaccagttatggttgtggctgctacttttgctaatgctacttatgagagactgcctcttgaggaagatgatgaggctggaagcggtggtggtggtggaggtcatggagcttctgcaagctcccctactggagttggaagtagtggcggtcctcagttgcagccacccgggcacggcggacagctgcctgatccgtcgtcgctccccctttacggtctgccacccaatctgatccccaacggcggcccactcgggcatgacgcttatgcttggactcattcaagaccgccttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

282

Amino Acids

28.39

Weight (kDa)

5.88

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	466
AccB7I	CCANNNNNTGG	1 cut(s)	259
AccBSI	CCGCTC	1 cut(s)	438
AccI	GTMKAC	2 cut(s)	473, 489
AclWI	GGATC	7 cut(s)	166, 183, 196, 418, 544, 737, 778
AcoI	YGGCCR	1 cut(s)	357
AcvI	CACGTG	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	316
AfeI	AGCGCT	1 cut(s)	30
AfiI	CCNNNNNNNGG	5 cut(s)	140, 259, 725, 764, 794
AgsI	TTSAA	1 cut(s)	834
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	224, 451
AluBI	AGCT	3 cut(s)	662, 672, 736
AluI	AGCT	3 cut(s)	662, 672, 736
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	93, 367, 595
AlwI	GGATC	7 cut(s)	166, 183, 196, 418, 544, 737, 778
AlwNI	CAGNNNCTG	1 cut(s)	458
Ama87I	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
Aor51HI	AGCGCT	1 cut(s)	30
AoxI	GGCC	7 cut(s)	144, 167, 175, 357, 393, 478, 796
ApeKI	GCWGC	6 cut(s)	11, 26, 383, 572, 712, 736
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	8 cut(s)	4, 144, 168, 393, 455, 554, 701, 797
AsuC2I	CCSGG	8 cut(s)	8, 186, 390, 391, 468, 469, 720, 721
AsuHPI	GGTGA	1 cut(s)	12
AvaI	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
AvaII	GGWCC	4 cut(s)	4, 455, 554, 701
BaeGI	GKGCMC	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	256
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	6 cut(s)	23, 38, 370, 559, 723, 724
BccI	CCATC	2 cut(s)	221, 253
BceAI	ACGGC	4 cut(s)	131, 380, 742, 808
BciT130I	CCWGG	2 cut(s)	226, 453
BcnI	CCSGG	8 cut(s)	8, 186, 390, 391, 468, 469, 720, 721
BcoDI	GTCTC	3 cut(s)	93, 367, 595
BfaI	CTAG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	466
BglI	GCCNNNNNGGC	2 cut(s)	392, 721
BlpI	GCTNAGC	1 cut(s)	338
Bme18I	GGWCC	4 cut(s)	4, 455, 554, 701
BmeT110I	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	8 cut(s)	4, 144, 168, 393, 455, 554, 701, 797
BmiI	GGNNCC	5 cut(s)	6, 145, 170, 190, 394
BplI	GAGNNNNNCTC	2 cut(s)	592, 624
BpmI	CTGGAG	1 cut(s)	702
Bpu10I	CCTNAGC	1 cut(s)	434
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	632
BpuMI	CCSGG	8 cut(s)	8, 186, 390, 391, 468, 469, 720, 721
BsaAI	YACGTR	1 cut(s)	256
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	8 cut(s)	172, 225, 388, 389, 390, 409, 467, 719
Bsc4I	CCNNNNNNNGG	5 cut(s)	140, 259, 725, 764, 794
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	557, 685
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	226, 453
BseDI	CCNNGG	8 cut(s)	172, 225, 388, 389, 390, 409, 467, 719
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	5 cut(s)	140, 259, 725, 764, 794
BseMII	CTCAG	5 cut(s)	352, 362, 366, 425, 719
BseNI	ACTGG	2 cut(s)	557, 685
BseSI	GKGCMC	1 cut(s)	726
BseXI	GCAGC	6 cut(s)	23, 38, 370, 559, 723, 724
BshFI	GGCC	7 cut(s)	146, 169, 177, 359, 395, 480, 798
BsiHKAI	GWGCWC	1 cut(s)	339
BsiHKCI	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
BsiSI	CCGG	6 cut(s)	8, 186, 270, 390, 468, 720
BslFI	GGGAC	2 cut(s)	242, 415
BslI	CCNNNNNNNGG	5 cut(s)	140, 259, 725, 764, 794
BsmAI	GTCTC	3 cut(s)	93, 367, 595
BsmBI	CGTCTC	1 cut(s)	93
BsmFI	GGGAC	2 cut(s)	242, 415
BsnI	GGCC	7 cut(s)	146, 169, 177, 359, 395, 480, 798
BsoBI	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
Bsp1286I	GDGCHC	2 cut(s)	339, 726
Bsp143I	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
Bsp1720I	GCTNAGC	1 cut(s)	338
Bsp19I	CCATGG	1 cut(s)	409
BspANI	GGCC	7 cut(s)	146, 169, 177, 359, 395, 480, 798
BspCNI	CTCAG	5 cut(s)	351, 363, 365, 426, 718
BspLI	GGNNCC	5 cut(s)	6, 145, 170, 190, 394
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	7 cut(s)	166, 183, 196, 418, 544, 737, 778
BspQI	GCTCTTC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	557, 685
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	8 cut(s)	172, 225, 388, 389, 390, 409, 467, 719
BssMI	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	226, 453
Bst4CI	ACNGT	2 cut(s)	487, 767
Bst6I	CTCTTC	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	316
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	4 cut(s)	271, 335, 499, 670
BstDEI	CTNAG	6 cut(s)	245, 338, 352, 371, 434, 705
BstDSI	CCRYGG	1 cut(s)	409
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	7 cut(s)	121, 161, 191, 426, 539, 745, 786
BstMAI	GTCTC	3 cut(s)	93, 367, 595
BstMBI	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
BstNI	CCWGG	2 cut(s)	226, 453
BstSLI	GKGCMC	1 cut(s)	726
BstV1I	GCAGC	6 cut(s)	23, 38, 370, 559, 723, 724
BstX2I	RGATCY	3 cut(s)	158, 188, 423
BstYI	RGATCY	3 cut(s)	158, 188, 423
BsuRI	GGCC	7 cut(s)	146, 169, 177, 359, 395, 480, 798
BtgI	CCRYGG	1 cut(s)	409
BtrI	CACGTC	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	91, 360, 368
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	4 cut(s)	271, 335, 499, 670
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	8 cut(s)	4, 144, 168, 393, 455, 554, 701, 797
Cfr9I	CCCGGG	3 cut(s)	389, 467, 719
CseI	GACGC	2 cut(s)	305, 821
CviAII	CATG	4 cut(s)	58, 410, 656, 809
DdeI	CTNAG	6 cut(s)	245, 338, 352, 371, 434, 705
DpnI	GATC	7 cut(s)	120, 160, 190, 425, 538, 744, 785
DpnII	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	3 cut(s)	302, 453, 744
Eco130I	CCWWGG	1 cut(s)	409
Eco147I	AGGCCT	1 cut(s)	480
Eco47I	GGWCC	4 cut(s)	4, 455, 554, 701
Eco47III	AGCGCT	1 cut(s)	30
Eco72I	CACGTG	1 cut(s)	256
Eco88I	CYCGRG	6 cut(s)	47, 171, 389, 467, 719, 803
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	168, 455
EcoRII	CCWGG	2 cut(s)	224, 451
EcoT14I	CCWWGG	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	409
Esp3I	CGTCTC	1 cut(s)	93
FaeI	CATG	4 cut(s)	61, 413, 659, 812
FaiI	YATR	7 cut(s)	59, 411, 563, 597, 657, 810, 819
FalI	AAGNNNNNCTT	1 cut(s)	826
FaqI	GGGAC	2 cut(s)	242, 415
FatI	CATG	4 cut(s)	57, 409, 655, 808
FauI	CCCGC	2 cut(s)	335, 388
FblI	GTMKAC	2 cut(s)	473, 489
FspBI	CTAG	1 cut(s)	494
GlaI	GCGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	702
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	7 cut(s)	146, 169, 177, 359, 395, 480, 798
HapII	CCGG	6 cut(s)	8, 186, 270, 390, 468, 720
HgaI	GACGC	2 cut(s)	305, 821
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	4 cut(s)	61, 413, 659, 812
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	1 cut(s)	826
HpaII	CCGG	6 cut(s)	8, 186, 270, 390, 468, 720
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	474, 490
Hpy188I	TCNGA	2 cut(s)	321, 783
Hpy188III	TCNNGA	7 cut(s)	49, 151, 162, 220, 421, 611, 834
Hpy8I	GTNNAC	2 cut(s)	474, 490
Hpy99I	CGWCG	5 cut(s)	107, 110, 152, 751, 754
HpyAV	CCTTC	3 cut(s)	134, 159, 408
HpyCH4III	ACNGT	2 cut(s)	487, 767
HpyCH4IV	ACGT	3 cut(s)	255, 282, 363
HpyCH4V	TGCA	2 cut(s)	668, 712
HpyF3I	CTNAG	6 cut(s)	245, 338, 352, 371, 434, 705
HpySE526I	ACGT	3 cut(s)	255, 282, 363
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	4 cut(s)	61, 413, 659, 812
HspAI	GCGC	1 cut(s)	29
KroI	GCCGGC	1 cut(s)	269
KroNI	GCCGGC	1 cut(s)	271
Kzo9I	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	5 cut(s)	440, 466, 659, 677, 759
Lsp1109I	GCAGC	6 cut(s)	23, 38, 370, 559, 723, 724
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	3 cut(s)	255, 282, 363
MaeIII	GTNAC	2 cut(s)	220, 364
MalI	GATC	7 cut(s)	120, 160, 190, 425, 538, 744, 785
MbiI	CCGCTC	1 cut(s)	438
MboI	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
MboII	GAAGA	4 cut(s)	122, 140, 208, 629
MflI	RGATCY	3 cut(s)	158, 188, 423
MhlI	GDGCHC	2 cut(s)	339, 726
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	2 cut(s)	16, 302
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	820
MmeI	TCCRAC	2 cut(s)	514, 667
MnlI	CCTC	9 cut(s)	167, 192, 306, 317, 607, 618, 619, 644, 714
Mox20I	TGGCCA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	4 cut(s)	72, 342, 383, 736
MspI	CCGG	6 cut(s)	8, 186, 270, 390, 468, 720
MvaI	CCWGG	2 cut(s)	226, 453
NaeI	GCCGGC	1 cut(s)	271
NciI	CCSGG	8 cut(s)	8, 186, 390, 391, 468, 469, 720, 721
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
NgoMIV	GCCGGC	1 cut(s)	269
NlaIII	CATG	4 cut(s)	61, 413, 659, 812
NlaIV	GGNNCC	5 cut(s)	6, 145, 170, 190, 394
NmuCI	GTSAC	2 cut(s)	220, 364
PaeR7I	CTCGAG	1 cut(s)	47
PceI	AGGCCT	1 cut(s)	480
PciSI	GCTCTTC	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PdiI	GCCGGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	184
PleI	GAGTC	1 cut(s)	820
PmaCI	CACGTG	1 cut(s)	256
PmlI	CACGTG	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	820
Ppu21I	YACGTR	1 cut(s)	256
PpuMI	RGGWCCY	1 cut(s)	455
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	224, 451
PspCI	CACGTG	1 cut(s)	256
PspGI	CCWGG	2 cut(s)	224, 451
PspN4I	GGNNCC	5 cut(s)	6, 145, 170, 190, 394
PspPI	GGNCC	8 cut(s)	4, 144, 168, 393, 455, 554, 701, 797
PspPPI	RGGWCCY	1 cut(s)	455
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	3 cut(s)	158, 188, 423
PvuII	CAGCTG	1 cut(s)	736
RseI	CAYNNNNRTG	1 cut(s)	218
SalI	GTCGAC	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	123
Sau3AI	GATC	7 cut(s)	118, 158, 188, 423, 536, 742, 783
Sau96I	GGNCC	8 cut(s)	4, 144, 168, 393, 455, 554, 701, 797
SchI	GAGTC	1 cut(s)	820
SduI	GDGCHC	2 cut(s)	339, 726
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	4 cut(s)	4, 455, 554, 701
SlaI	CTCGAG	1 cut(s)	47
SmaI	CCCGGG	3 cut(s)	391, 469, 721
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	47, 611
SmoI	CTYRAG	2 cut(s)	47, 611
Sse9I	AATT	2 cut(s)	16, 302
SseBI	AGGCCT	1 cut(s)	480
SspMI	CTAG	1 cut(s)	494
StuI	AGGCCT	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	487, 767
TaiI	ACGT	3 cut(s)	258, 285, 366
TaqI	TCGA	5 cut(s)	48, 150, 163, 420, 473
TasI	AATT	2 cut(s)	16, 302
TauI	GCSGC	5 cut(s)	75, 78, 180, 551, 798
TscAI	CASTG	3 cut(s)	91, 360, 375
TseFI	GTSAC	2 cut(s)	220, 364
TseI	GCWGC	6 cut(s)	11, 26, 383, 572, 712, 736
Tsp45I	GTSAC	2 cut(s)	220, 364
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	2 cut(s)	325, 735
TspMI	CCCGGG	3 cut(s)	389, 467, 719
TspRI	CASTG	3 cut(s)	91, 360, 375
Van91I	CCANNNNNTGG	1 cut(s)	259
VpaK11BI	GGWCC	4 cut(s)	4, 455, 554, 701
XagI	CCTNNNNNAGG	1 cut(s)	138
XhoI	CTCGAG	1 cut(s)	47
XmaI	CCCGGG	3 cut(s)	389, 467, 719
XmiI	GTMKAC	2 cut(s)	473, 489
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.