Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Forward (+)

48413579 .. 48414439

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCATGGTGGGCTGGGCAGGTGGGTTTACCCGGAGGACTGAAACACGAAGGCTCAGCTGGCAGCAGCACTCCGATGAAGTTAATGAAACCAGATCTGGGAATCTCCATGAACAACAGTTCCACTAGCCACCTCCTTGGTGGTGGAGGTGGATCAGGATCAGCTGGCGACGATGATGACGAAAGGGACAACGTCAGCGGCGACGACCCCAAGGAGGGGGCTGTCGAAGTCTCAGGCAGCAACAGGCGCCCTAGAGGACGCCCTCCGGGGTCTAAAAACAAGCCGAAACCACCCATCTTTGTGACAAGGGATAGCCCCAACGCCCTCCGGAGCCACGTCATGGAGATCGCCAACGGCGCTGACATAGCTGAGAGCGTGGCGCAGTTCGCTAGGGCGAGGCAGAGAGGCGTCTGCGTGATGAGTGGGAGCGGGACCGTCACCAACGTCACGCTCCGGCAGCCTTCAGCTCCCGGAGCGGTCATGGCCCTCCATGGAAGGTTCGAGATTCTGTCCCTGACCGGAGCCTTTTTGCCCGGGCCAGCACCACCAGGGGCGACCGGAATGACCATATACTTGGCGGGCGGGCAGGGGCAGGTCGTCGGAGGAAGCGTGGTTGGCCCTCTTATAGCTTCTGGACCGGTCATGGTAATAGCAGCCACTTTCTCTAATGCTACTTATGAAAGACTGCCCTTGGAACAAGAGGAGGATGATCAGCCGCCTGCCCCGAATTCGGGGCAGACGGCTGGAGGTGGCGGATCTCCACCCGGTATTGGGGGAGTTTGGGCGATGCGAATTCGTCTATGCCGCCCGGGGTTTACAATTTACCGCCTAGTTTGGTTCCGAACGGTGGAGGGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

286

Amino Acids

29.32

Weight (kDa)

7.83

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	110 - 222	2.5e-24	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	10
Acc36I	ACCTGC	2 cut(s)	10, 583
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccBSI	CCGCTC	2 cut(s)	429, 476
AccIII	TCCGGA	1 cut(s)	327
AciI	CCGC	9 cut(s)	198, 429, 476, 578, 582, 716, 753, 805, 826
AclWI	GGATC	3 cut(s)	160, 166, 763
AcsI	RAATTY	2 cut(s)	727, 792
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	3 cut(s)	247, 259, 408
AgeI	ACCGGT	1 cut(s)	637
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	547
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	5 cut(s)	59, 164, 368, 467, 629
AluI	AGCT	5 cut(s)	59, 164, 368, 467, 629
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	160, 166, 763
Ama87I	CYCGRG	2 cut(s)	533, 808
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	3 cut(s)	483, 536, 616
ApeKI	GCWGC	5 cut(s)	63, 66, 237, 457, 653
ApoI	RAATTY	2 cut(s)	727, 792
AsiGI	ACCGGT	1 cut(s)	637
AspLEI	GCGC	3 cut(s)	249, 359, 382
AspS9I	GGNCC	5 cut(s)	432, 484, 536, 617, 635
AsuC2I	CCSGG	8 cut(s)	33, 267, 471, 534, 535, 765, 809, 810
AsuHPI	GGTGA	1 cut(s)	430
AvaI	CYCGRG	2 cut(s)	533, 808
AvaII	GGWCC	2 cut(s)	432, 635
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	5 cut(s)	75, 78, 249, 469, 665
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	2 cut(s)	370, 756
BciT130I	CCWGG	1 cut(s)	549
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	8 cut(s)	33, 267, 471, 534, 535, 765, 809, 810
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	4 cut(s)	126, 252, 390, 830
BfoI	RGCGCY	2 cut(s)	250, 360
BfuAI	ACCTGC	2 cut(s)	10, 583
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	8 cut(s)	64, 67, 199, 238, 458, 654, 716, 805
BlpI	GCTNAGC	1 cut(s)	55
BlsI	GCNGC	8 cut(s)	65, 68, 200, 239, 459, 655, 717, 806
Bme1390I	CCNGG	9 cut(s)	33, 267, 471, 534, 535, 549, 765, 809, 810
Bme18I	GGWCC	2 cut(s)	432, 635
BmeT110I	CYCGRG	2 cut(s)	533, 808
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	5 cut(s)	432, 484, 536, 617, 635
BmiI	GGNNCC	5 cut(s)	248, 332, 433, 523, 839
BmrFI	CCNGG	9 cut(s)	33, 267, 471, 534, 535, 549, 765, 809, 810
BmsI	GCATC	1 cut(s)	777
BpmI	CTGGAG	1 cut(s)	765
Bpu1102I	GCTNAGC	1 cut(s)	55
BpuMI	CCSGG	8 cut(s)	33, 267, 471, 534, 535, 765, 809, 810
BsaBI	GATNNNNATC	1 cut(s)	157
BsaHI	GRCGYC	3 cut(s)	247, 259, 408
BsaJI	CCNNGG	9 cut(s)	136, 210, 266, 490, 533, 548, 690, 808, 809
BsaWI	WCCGGW	4 cut(s)	327, 518, 557, 637
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse118I	RCCGGY	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	9 cut(s)	136, 210, 266, 490, 533, 548, 690, 808, 809
BseGI	GGATG	1 cut(s)	712
BseJI	GATNNNNATC	1 cut(s)	157
BseMII	CTCAG	3 cut(s)	69, 246, 360
BseRI	GAGGAG	1 cut(s)	716
BseXI	GCAGC	5 cut(s)	75, 78, 249, 469, 665
BseYI	CCCAGC	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	3 cut(s)	485, 538, 618
BshNI	GGYRCC	1 cut(s)	246
BshTI	ACCGGT	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	558
BsiHKCI	CYCGRG	2 cut(s)	533, 808
BslFI	GGGAC	3 cut(s)	200, 445, 496
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	3 cut(s)	200, 445, 496
BsnI	GGCC	3 cut(s)	485, 538, 618
BsoBI	CYCGRG	2 cut(s)	533, 808
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
Bsp1720I	GCTNAGC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	9 cut(s)	198, 429, 476, 578, 582, 716, 753, 805, 826
BspANI	GGCC	3 cut(s)	485, 538, 618
BspCNI	CTCAG	3 cut(s)	68, 245, 361
BspEI	TCCGGA	1 cut(s)	327
BspLI	GGNNCC	5 cut(s)	248, 332, 433, 523, 839
BspMI	ACCTGC	2 cut(s)	10, 583
BspPI	GGATC	3 cut(s)	160, 166, 763
BspT107I	GGYRCC	1 cut(s)	246
BsrBI	CCGCTC	2 cut(s)	429, 476
BsrFI	RCCGGY	1 cut(s)	637
BssAI	RCCGGY	1 cut(s)	637
BssECI	CCNNGG	9 cut(s)	136, 210, 266, 490, 533, 548, 690, 808, 809
BssMI	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
BssNI	GRCGYC	3 cut(s)	247, 259, 408
BssT1I	CCWWGG	4 cut(s)	136, 210, 490, 690
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	119, 436, 847
BstACI	GRCGYC	3 cut(s)	247, 259, 408
BstC8I	GCNNGC	6 cut(s)	61, 166, 540, 580, 584, 720
BstDEI	CTNAG	3 cut(s)	55, 232, 369
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	712
BstH2I	RGCGCY	2 cut(s)	250, 360
BstHHI	GCGC	3 cut(s)	249, 359, 382
BstKTI	GATC	6 cut(s)	97, 155, 161, 348, 712, 758
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
BstMCI	CGRYCG	1 cut(s)	558
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	9 cut(s)	31, 265, 469, 532, 533, 547, 763, 807, 808
BstV1I	GCAGC	5 cut(s)	75, 78, 249, 469, 665
BstX2I	RGATCY	2 cut(s)	94, 755
BstXI	CCANNNNNNTGG	2 cut(s)	137, 574
BstYI	RGATCY	2 cut(s)	94, 755
BsuRI	GGCC	3 cut(s)	485, 538, 618
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	800
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	1 cut(s)	712
BveI	ACCTGC	2 cut(s)	10, 583
Cac8I	GCNNGC	6 cut(s)	61, 166, 540, 580, 584, 720
CfoI	GCGC	3 cut(s)	249, 359, 382
Cfr10I	RCCGGY	1 cut(s)	637
Cfr13I	GGNCC	5 cut(s)	432, 484, 536, 617, 635
Cfr9I	CCCGGG	2 cut(s)	533, 808
CseI	GACGC	2 cut(s)	267, 397
CspAI	ACCGGT	1 cut(s)	637
CviAII	CATG	6 cut(s)	6, 109, 340, 481, 491, 643
DdeI	CTNAG	3 cut(s)	55, 232, 369
DinI	GGCGCC	1 cut(s)	248
DpnI	GATC	6 cut(s)	96, 154, 160, 347, 711, 757
DpnII	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
EciI	GGCGGA	1 cut(s)	768
Eco130I	CCWWGG	4 cut(s)	136, 210, 490, 690
Eco47I	GGWCC	2 cut(s)	432, 635
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	2 cut(s)	533, 808
EcoRI	GAATTC	2 cut(s)	727, 792
EcoRII	CCWGG	1 cut(s)	547
EcoT14I	CCWWGG	4 cut(s)	136, 210, 490, 690
EgeI	GGCGCC	1 cut(s)	248
EheI	GGCGCC	1 cut(s)	248
ErhI	CCWWGG	4 cut(s)	136, 210, 490, 690
FaeI	CATG	6 cut(s)	9, 112, 343, 484, 494, 646
FaqI	GGGAC	3 cut(s)	200, 445, 496
FatI	CATG	6 cut(s)	5, 108, 339, 480, 490, 642
FauI	CCCGC	3 cut(s)	422, 571, 575
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	8 cut(s)	64, 67, 199, 238, 458, 654, 716, 805
FokI	GGATG	1 cut(s)	719
Fsp4HI	GCNGC	8 cut(s)	64, 67, 199, 238, 458, 654, 716, 805
FspBI	CTAG	4 cut(s)	126, 252, 390, 830
GlaI	GCGC	3 cut(s)	248, 358, 381
GluI	GCNGC	8 cut(s)	64, 67, 199, 238, 458, 654, 716, 805
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	765
HaeII	RGCGCY	2 cut(s)	250, 360
HaeIII	GGCC	3 cut(s)	485, 538, 618
HgaI	GACGC	2 cut(s)	267, 397
HhaI	GCGC	3 cut(s)	249, 359, 382
Hin1I	GRCGYC	3 cut(s)	247, 259, 408
Hin1II	CATG	6 cut(s)	9, 112, 343, 484, 494, 646
Hin6I	GCGC	3 cut(s)	247, 357, 380
HinP1I	GCGC	3 cut(s)	247, 357, 380
HinfI	GANTC	2 cut(s)	102, 505
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	29, 816
Hpy188I	TCNGA	3 cut(s)	75, 602, 842
Hpy188III	TCNNGA	4 cut(s)	156, 328, 502, 633
Hpy8I	GTNNAC	2 cut(s)	29, 816
Hpy99I	CGWCG	3 cut(s)	173, 206, 602
HpyAV	CCTTC	3 cut(s)	44, 471, 489
HpyCH4III	ACNGT	3 cut(s)	119, 436, 847
HpyCH4IV	ACGT	3 cut(s)	192, 336, 444
HpyF3I	CTNAG	3 cut(s)	55, 232, 369
HpySE526I	ACGT	3 cut(s)	192, 336, 444
Hsp92I	GRCGYC	3 cut(s)	247, 259, 408
Hsp92II	CATG	6 cut(s)	9, 112, 343, 484, 494, 646
HspAI	GCGC	3 cut(s)	247, 357, 380
KasI	GGCGCC	1 cut(s)	246
Kpn2I	TCCGGA	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
LmnI	GCTCC	6 cut(s)	330, 426, 456, 472, 473, 521
Lsp1109I	GCAGC	5 cut(s)	75, 78, 249, 469, 665
LweI	GCATC	1 cut(s)	777
MaeI	CTAG	4 cut(s)	126, 252, 390, 830
MaeII	ACGT	3 cut(s)	192, 336, 444
MaeIII	GTNAC	3 cut(s)	301, 436, 445
MalI	GATC	6 cut(s)	96, 154, 160, 347, 711, 757
MbiI	CCGCTC	2 cut(s)	429, 476
MboI	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
MflI	RGATCY	2 cut(s)	94, 755
MluCI	AATT	3 cut(s)	727, 792, 819
Mly113I	GGCGCC	1 cut(s)	247
MmeI	TCCRAC	1 cut(s)	580
MroI	TCCGGA	1 cut(s)	327
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	2 cut(s)	74, 299
MspA1I	CMGCKG	3 cut(s)	59, 164, 198
MspR9I	CCNGG	9 cut(s)	33, 267, 471, 534, 535, 549, 765, 809, 810
MvaI	CCWGG	1 cut(s)	549
NarI	GGCGCC	1 cut(s)	247
NciI	CCSGG	8 cut(s)	33, 267, 471, 534, 535, 765, 809, 810
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
NlaIII	CATG	6 cut(s)	9, 112, 343, 484, 494, 646
NlaIV	GGNNCC	5 cut(s)	248, 332, 433, 523, 839
NmuCI	GTSAC	3 cut(s)	301, 436, 445
PaqCI	CACCTGC	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 198, 606
PfeI	GAWTC	2 cut(s)	102, 505
PflFI	GACNNNGTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	469
PinAI	ACCGGT	1 cut(s)	637
PkrI	GCNGC	8 cut(s)	65, 68, 200, 239, 459, 655, 717, 806
PluTI	GGCGCC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	5 cut(s)	248, 332, 433, 523, 839
PspPI	GGNCC	5 cut(s)	432, 484, 536, 617, 635
PsuI	RGATCY	2 cut(s)	94, 755
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	2 cut(s)	59, 164
RseI	CAYNNNNRTG	2 cut(s)	74, 299
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	8 cut(s)	64, 67, 199, 238, 458, 654, 716, 805
Sau3AI	GATC	6 cut(s)	94, 152, 158, 345, 709, 755
Sau96I	GGNCC	5 cut(s)	432, 484, 536, 617, 635
ScrFI	CCNGG	9 cut(s)	33, 267, 471, 534, 535, 549, 765, 809, 810
SfaNI	GCATC	1 cut(s)	777
SfoI	GGCGCC	1 cut(s)	248
SinI	GGWCC	2 cut(s)	432, 635
SmaI	CCCGGG	2 cut(s)	535, 810
SmiMI	CAYNNNNRTG	2 cut(s)	74, 299
SrfI	GCCCGGGC	1 cut(s)	535
Sse9I	AATT	3 cut(s)	727, 792, 819
SsiI	CCGC	9 cut(s)	198, 429, 476, 578, 582, 716, 753, 805, 826
SspDI	GGCGCC	1 cut(s)	246
SspMI	CTAG	4 cut(s)	126, 252, 390, 830
StyD4I	CCNGG	9 cut(s)	31, 265, 469, 532, 533, 547, 763, 807, 808
StyI	CCWWGG	4 cut(s)	136, 210, 490, 690
TaaI	ACNGT	3 cut(s)	119, 436, 847
TaiI	ACGT	3 cut(s)	195, 339, 447
TaqI	TCGA	2 cut(s)	225, 501
TasI	AATT	3 cut(s)	727, 792, 819
TauI	GCSGC	3 cut(s)	201, 718, 807
TfiI	GAWTC	2 cut(s)	102, 505
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	3 cut(s)	301, 436, 445
TseI	GCWGC	5 cut(s)	63, 66, 237, 457, 653
Tsp45I	GTSAC	3 cut(s)	301, 436, 445
TspDTI	ATGAA	4 cut(s)	92, 101, 125, 693
TspMI	CCCGGG	2 cut(s)	533, 808
Tth111I	GACNNNGTC	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	432, 635
XapI	RAATTY	2 cut(s)	727, 792
XcmI	CCANNNNNNNNNTGG	1 cut(s)	137
XmaI	CCCGGG	2 cut(s)	533, 808
XspI	CTAG	4 cut(s)	126, 252, 390, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.