RLG00000025758

Transcription factor that specifically binds AT-rich DNA sequences related to the nuclear matrix attachment regions (MARs)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
48108130 .. 48109044
915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025758

Sequence Viewer

Length: 915 bp
ATGGCATGGTGGGCTGGGCAGGTGGGTTTACCCGGAGGACTGAAACACGAAGGCTCAGCTGGCGGCAGCACTCCGATGAAGTTAATGAAACCAGATCTGGGAATCTCCATGAACAACAGTTCCACTAGCCACCTCCTTGGTGGTGGAGGTGGATCAGGATCAGCTGGAGACGATGATGACGAAAGGGACAACGTCAGCGGCGACGACCCCAAGGAGGGCGCCATCGAAGTCTCAGGCAGCAACAGGCGCCCGAGAGGACGCCCTCCGGGATCTAAAAACAAGCCGAAACCACCCATCTTCGTGACAAGGGACAGCCCCAACGCCCTCCGGAGCCACGTAATGGAGATCGCCAACGGCGCTGACATAGCTGAGAGCGTGGCGCAGTTCGCCAGGGCTAGGCAGAGAGGCGTCTGCGTGATGAGTGGGAGCGGGACCGTCACCAACGTCACACTCCGGCAGCCTTCAGCTCCCGGAGCGGTCATGGCCCTCCATGGAAGGTTCGAGATTCTGTCCCTGACCGGAGCGTTTTTGCCCGGGCCAGCACCACCAGGGGCGACCGGAATGACCATATACTTGGCGGGCGGGCAGGGGCAGGTCGTCGGAGGAAGCGTGGTGGGCCCTCTTATAGCTTCCGGACCGGTCATGGTAATAGCAGCCACTTTCTCTAATGCTACTTATGAAAGACTGCCCTTGGATCAAGAGGAGGATGATCAGCCGCCTGCCCCGAATTCGGGGCAGACGGCTGGAGGTGGTGGATCTCCACCCGGTATTGGGGGGAGTTTGGGCGATCCGAATTCGTCTATGCCGCCCGGGGTTTACAATTTGCCGCCCAGTTTGGCTCCGAACGGTGGAGGGCAGTTGAACCATGAGGCATATTCAAATTGGGCTCATGGTGGAGGTAGACCTCCATTTTAA

Protein Analysis

305

Amino Acids

30.59

Weight (kDa)

5.85

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCC PF03479 110 - 222 2.9e-24 Plants and Prokaryotes Conserved (PCC) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 10
Acc36I ACCTGC 2 cut(s) 10, 583
AccB1I GGYRCC 2 cut(s) 218, 246
AccB7I CCANNNNNTGG 1 cut(s) 340
AccBSI CCGCTC 2 cut(s) 429, 476
AccI GTMKAC 1 cut(s) 901
AccIII TCCGGA 2 cut(s) 327, 632
AciI CCGC 9 cut(s) 63, 198, 429, 476, 578, 582, 716, 806, 827
AclWI GGATC 6 cut(s) 160, 166, 277, 702, 763, 782
AcsI RAATTY 2 cut(s) 727, 793
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 4 cut(s) 219, 247, 259, 408
AgeI ACCGGT 1 cut(s) 637
AgsI TTSAA 2 cut(s) 862, 879
AjnI CCWGG 2 cut(s) 389, 547
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 5 cut(s) 59, 164, 368, 467, 629
AluI AGCT 5 cut(s) 59, 164, 368, 467, 629
Alw26I GTCTC 2 cut(s) 162, 235
AlwI GGATC 6 cut(s) 160, 166, 277, 702, 763, 782
Ama87I CYCGRG 3 cut(s) 250, 533, 809
Aor13HI TCCGGA 2 cut(s) 327, 632
AoxI GGCC 3 cut(s) 483, 536, 616
ApaI GGGCCC 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 66, 237, 457, 653
ApoI RAATTY 2 cut(s) 727, 793
AsiGI ACCGGT 1 cut(s) 637
AspLEI GCGC 4 cut(s) 221, 249, 359, 382
AspS9I GGNCC 6 cut(s) 432, 484, 536, 616, 617, 635
AsuC2I CCSGG 8 cut(s) 33, 267, 471, 534, 535, 765, 810, 811
AsuHPI GGTGA 1 cut(s) 430
AvaI CYCGRG 3 cut(s) 250, 533, 809
AvaII GGWCC 2 cut(s) 432, 635
BaeGI GKGCMC 1 cut(s) 620
BanI GGYRCC 2 cut(s) 218, 246
BanII GRGCYC 2 cut(s) 620, 889
BbvI GCAGC 4 cut(s) 78, 249, 469, 665
BccI CCATC 2 cut(s) 230, 302
BceAI ACGGC 2 cut(s) 370, 756
BciT130I CCWGG 2 cut(s) 391, 549
BclI TGATCA 1 cut(s) 709
BcnI CCSGG 8 cut(s) 33, 267, 471, 534, 535, 765, 810, 811
BcoDI GTCTC 2 cut(s) 162, 235
BfaI CTAG 2 cut(s) 126, 396
BfoI RGCGCY 3 cut(s) 222, 250, 360
BfuAI ACCTGC 2 cut(s) 10, 583
BglII AGATCT 1 cut(s) 94
BisI GCNGC 9 cut(s) 64, 67, 199, 238, 458, 654, 716, 806, 827
BlpI GCTNAGC 1 cut(s) 55
BlsI GCNGC 9 cut(s) 65, 68, 200, 239, 459, 655, 717, 807, 828
Bme18I GGWCC 2 cut(s) 432, 635
BmeT110I CYCGRG 3 cut(s) 250, 533, 809
BmgT120I GGNCC 6 cut(s) 432, 484, 536, 616, 617, 635
BmiI GGNNCC 6 cut(s) 220, 248, 332, 433, 618, 840
BmrI ACTGGG 1 cut(s) 825
BmuI ACTGGG 1 cut(s) 825
BpmI CTGGAG 2 cut(s) 186, 765
Bpu1102I GCTNAGC 1 cut(s) 55
BpuMI CCSGG 8 cut(s) 33, 267, 471, 534, 535, 765, 810, 811
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 157
BsaHI GRCGYC 4 cut(s) 219, 247, 259, 408
BsaJI CCNNGG 9 cut(s) 136, 210, 390, 490, 533, 548, 690, 809, 810
BsaWI WCCGGW 5 cut(s) 327, 518, 557, 632, 637
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse118I RCCGGY 1 cut(s) 637
Bse1I ACTGG 1 cut(s) 831
Bse8I GATNNNNATC 1 cut(s) 157
BseAI TCCGGA 2 cut(s) 327, 632
BseBI CCWGG 2 cut(s) 391, 549
BseDI CCNNGG 9 cut(s) 136, 210, 390, 490, 533, 548, 690, 809, 810
BseGI GGATG 1 cut(s) 712
BseJI GATNNNNATC 1 cut(s) 157
BseMII CTCAG 3 cut(s) 69, 246, 360
BseNI ACTGG 1 cut(s) 831
BseRI GAGGAG 1 cut(s) 716
BseSI GKGCMC 1 cut(s) 620
BseXI GCAGC 4 cut(s) 78, 249, 469, 665
BseYI CCCAGC 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 3 cut(s) 485, 538, 618
BshNI GGYRCC 2 cut(s) 218, 246
BshTI ACCGGT 1 cut(s) 637
BsiEI CGRYCG 1 cut(s) 558
BsiHKCI CYCGRG 3 cut(s) 250, 533, 809
BslFI GGGAC 4 cut(s) 200, 323, 445, 496
BsmAI GTCTC 2 cut(s) 162, 235
BsmBI CGTCTC 1 cut(s) 162
BsmFI GGGAC 4 cut(s) 200, 323, 445, 496
BsnI GGCC 3 cut(s) 485, 538, 618
BsoBI CYCGRG 3 cut(s) 250, 533, 809
Bsp120I GGGCCC 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 620, 889
Bsp13I TCCGGA 2 cut(s) 327, 632
Bsp143I GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
Bsp1720I GCTNAGC 1 cut(s) 55
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 9 cut(s) 63, 198, 429, 476, 578, 582, 716, 806, 827
BspANI GGCC 3 cut(s) 485, 538, 618
BspCNI CTCAG 3 cut(s) 68, 245, 361
BspEI TCCGGA 2 cut(s) 327, 632
BspLI GGNNCC 6 cut(s) 220, 248, 332, 433, 618, 840
BspMI ACCTGC 2 cut(s) 10, 583
BspPI GGATC 6 cut(s) 160, 166, 277, 702, 763, 782
BspT107I GGYRCC 2 cut(s) 218, 246
BsrBI CCGCTC 2 cut(s) 429, 476
BsrFI RCCGGY 1 cut(s) 637
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 637
BssECI CCNNGG 9 cut(s) 136, 210, 390, 490, 533, 548, 690, 809, 810
BssMI GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
BssNI GRCGYC 4 cut(s) 219, 247, 259, 408
BssT1I CCWWGG 4 cut(s) 136, 210, 490, 690
Bst2UI CCWGG 2 cut(s) 391, 549
Bst4CI ACNGT 3 cut(s) 119, 436, 848
BstACI GRCGYC 4 cut(s) 219, 247, 259, 408
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 5 cut(s) 61, 540, 580, 584, 720
BstDEI CTNAG 3 cut(s) 55, 232, 369
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 1 cut(s) 712
BstH2I RGCGCY 3 cut(s) 222, 250, 360
BstHHI GCGC 4 cut(s) 221, 249, 359, 382
BstKTI GATC 9 cut(s) 97, 155, 161, 272, 348, 697, 712, 758, 790
BstMAI GTCTC 2 cut(s) 162, 235
BstMBI GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
BstMCI CGRYCG 1 cut(s) 558
BstMWI GCNNNNNNNGC 9 cut(s) 11, 60, 246, 356, 365, 386, 473, 482, 615
BstNI CCWGG 2 cut(s) 391, 549
BstSLI GKGCMC 1 cut(s) 620
BstV1I GCAGC 4 cut(s) 78, 249, 469, 665
BstX2I RGATCY 3 cut(s) 94, 269, 755
BstXI CCANNNNNNTGG 2 cut(s) 137, 574
BstYI RGATCY 3 cut(s) 94, 269, 755
BsuRI GGCC 3 cut(s) 485, 538, 618
BtgI CCRYGG 1 cut(s) 490
BtsCI GGATG 1 cut(s) 712
BveI ACCTGC 2 cut(s) 10, 583
Cac8I GCNNGC 5 cut(s) 61, 540, 580, 584, 720
CfoI GCGC 4 cut(s) 221, 249, 359, 382
Cfr10I RCCGGY 1 cut(s) 637
Cfr13I GGNCC 6 cut(s) 432, 484, 536, 616, 617, 635
Cfr9I CCCGGG 2 cut(s) 533, 809
CpoI CGGWCCG 1 cut(s) 635
CseI GACGC 2 cut(s) 267, 397
CspAI ACCGGT 1 cut(s) 637
CspI CGGWCCG 1 cut(s) 635
CviAII CATG 7 cut(s) 6, 109, 481, 491, 643, 866, 890
DdeI CTNAG 3 cut(s) 55, 232, 369
DinI GGCGCC 2 cut(s) 220, 248
DpnI GATC 9 cut(s) 96, 154, 160, 271, 347, 696, 711, 757, 789
DpnII GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
Eco130I CCWWGG 4 cut(s) 136, 210, 490, 690
Eco24I GRGCYC 2 cut(s) 620, 889
Eco47I GGWCC 2 cut(s) 432, 635
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 3 cut(s) 250, 533, 809
EcoO109I RGGNCCY 1 cut(s) 617
EcoRI GAATTC 2 cut(s) 727, 793
EcoRII CCWGG 2 cut(s) 389, 547
EcoT14I CCWWGG 4 cut(s) 136, 210, 490, 690
EcoT38I GRGCYC 2 cut(s) 620, 889
EgeI GGCGCC 2 cut(s) 220, 248
EheI GGCGCC 2 cut(s) 220, 248
ErhI CCWWGG 4 cut(s) 136, 210, 490, 690
Esp3I CGTCTC 1 cut(s) 162
FaeI CATG 7 cut(s) 9, 112, 484, 494, 646, 869, 893
FaqI GGGAC 4 cut(s) 200, 323, 445, 496
FatI CATG 7 cut(s) 5, 108, 480, 490, 642, 865, 889
FauI CCCGC 3 cut(s) 422, 571, 575
FbaI TGATCA 1 cut(s) 709
FblI GTMKAC 1 cut(s) 901
Fnu4HI GCNGC 9 cut(s) 64, 67, 199, 238, 458, 654, 716, 806, 827
FokI GGATG 1 cut(s) 719
FriOI GRGCYC 2 cut(s) 620, 889
Fsp4HI GCNGC 9 cut(s) 64, 67, 199, 238, 458, 654, 716, 806, 827
FspBI CTAG 2 cut(s) 126, 396
GlaI GCGC 4 cut(s) 220, 248, 358, 381
GluI GCNGC 9 cut(s) 64, 67, 199, 238, 458, 654, 716, 806, 827
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 2 cut(s) 186, 765
HaeII RGCGCY 3 cut(s) 222, 250, 360
HaeIII GGCC 3 cut(s) 485, 538, 618
HgaI GACGC 2 cut(s) 267, 397
HhaI GCGC 4 cut(s) 221, 249, 359, 382
Hin1I GRCGYC 4 cut(s) 219, 247, 259, 408
Hin1II CATG 7 cut(s) 9, 112, 484, 494, 646, 869, 893
Hin6I GCGC 4 cut(s) 219, 247, 357, 380
HinP1I GCGC 4 cut(s) 219, 247, 357, 380
HinfI GANTC 2 cut(s) 102, 505
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 3 cut(s) 29, 817, 902
Hpy188I TCNGA 4 cut(s) 75, 602, 792, 843
Hpy188III TCNNGA 6 cut(s) 156, 301, 328, 502, 633, 698
Hpy8I GTNNAC 3 cut(s) 29, 817, 902
Hpy99I CGWCG 2 cut(s) 206, 602
HpyAV CCTTC 3 cut(s) 44, 471, 489
HpyCH4III ACNGT 3 cut(s) 119, 436, 848
HpyCH4IV ACGT 3 cut(s) 192, 336, 444
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 60, 246, 356, 365, 386, 473, 482, 615
HpyF3I CTNAG 3 cut(s) 55, 232, 369
HpySE526I ACGT 3 cut(s) 192, 336, 444
Hsp92I GRCGYC 4 cut(s) 219, 247, 259, 408
Hsp92II CATG 7 cut(s) 9, 112, 484, 494, 646, 869, 893
HspAI GCGC 4 cut(s) 219, 247, 357, 380
KasI GGCGCC 2 cut(s) 218, 246
Kpn2I TCCGGA 2 cut(s) 327, 632
Ksp22I TGATCA 1 cut(s) 709
Kzo9I GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
LmnI GCTCC 6 cut(s) 330, 426, 472, 473, 521, 844
Lsp1109I GCAGC 4 cut(s) 78, 249, 469, 665
MaeI CTAG 2 cut(s) 126, 396
MaeII ACGT 3 cut(s) 192, 336, 444
MaeIII GTNAC 3 cut(s) 301, 436, 445
MalI GATC 9 cut(s) 96, 154, 160, 271, 347, 696, 711, 757, 789
MbiI CCGCTC 2 cut(s) 429, 476
MboI GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
MboII GAAGA 1 cut(s) 289
MflI RGATCY 3 cut(s) 94, 269, 755
MhlI GDGCHC 2 cut(s) 620, 889
MluCI AATT 4 cut(s) 727, 793, 820, 880
Mly113I GGCGCC 2 cut(s) 219, 247
MmeI TCCRAC 1 cut(s) 580
MroI TCCGGA 2 cut(s) 327, 632
MseI TTAA 2 cut(s) 83, 913
MslI CAYNNNNRTG 2 cut(s) 74, 299
MspA1I CMGCKG 3 cut(s) 59, 164, 198
MvaI CCWGG 2 cut(s) 391, 549
MwoI GCNNNNNNNGC 9 cut(s) 11, 60, 246, 356, 365, 386, 473, 482, 615
NarI GGCGCC 2 cut(s) 219, 247
NciI CCSGG 8 cut(s) 33, 267, 471, 534, 535, 765, 810, 811
NcoI CCATGG 1 cut(s) 490
NdeII GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
NlaIII CATG 7 cut(s) 9, 112, 484, 494, 646, 869, 893
NlaIV GGNNCC 6 cut(s) 220, 248, 332, 433, 618, 840
NmuCI GTSAC 3 cut(s) 301, 436, 445
PaqCI CACCTGC 1 cut(s) 10
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 198, 606
PfeI GAWTC 2 cut(s) 102, 505
PflFI GACNNNGTC 1 cut(s) 191
PflMI CCANNNNNTGG 1 cut(s) 340
PfoI TCCNGGA 2 cut(s) 265, 469
PinAI ACCGGT 1 cut(s) 637
PkrI GCNGC 9 cut(s) 65, 68, 200, 239, 459, 655, 717, 807, 828
PluTI GGCGCC 2 cut(s) 222, 250
Ppu21I YACGTR 1 cut(s) 337
Psp6I CCWGG 2 cut(s) 389, 547
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 2 cut(s) 389, 547
PspN4I GGNNCC 6 cut(s) 220, 248, 332, 433, 618, 840
PspOMI GGGCCC 1 cut(s) 616
PspPI GGNCC 6 cut(s) 432, 484, 536, 616, 617, 635
PsuI RGATCY 3 cut(s) 94, 269, 755
PsyI GACNNNGTC 1 cut(s) 191
PvuII CAGCTG 2 cut(s) 59, 164
RseI CAYNNNNRTG 2 cut(s) 74, 299
Rsr2I CGGWCCG 1 cut(s) 635
RsrII CGGWCCG 1 cut(s) 635
SaqAI TTAA 2 cut(s) 83, 913
SatI GCNGC 9 cut(s) 64, 67, 199, 238, 458, 654, 716, 806, 827
Sau3AI GATC 9 cut(s) 94, 152, 158, 269, 345, 694, 709, 755, 787
Sau96I GGNCC 6 cut(s) 432, 484, 536, 616, 617, 635
SduI GDGCHC 2 cut(s) 620, 889
SfoI GGCGCC 2 cut(s) 220, 248
SinI GGWCC 2 cut(s) 432, 635
SmaI CCCGGG 2 cut(s) 535, 811
SmiMI CAYNNNNRTG 2 cut(s) 74, 299
SrfI GCCCGGGC 1 cut(s) 535
Sse9I AATT 4 cut(s) 727, 793, 820, 880
SsiI CCGC 9 cut(s) 63, 198, 429, 476, 578, 582, 716, 806, 827
SspDI GGCGCC 2 cut(s) 218, 246
SspMI CTAG 2 cut(s) 126, 396
StyI CCWWGG 4 cut(s) 136, 210, 490, 690
TaaI ACNGT 3 cut(s) 119, 436, 848
TaiI ACGT 3 cut(s) 195, 339, 447
TaqI TCGA 2 cut(s) 225, 501
TasI AATT 4 cut(s) 727, 793, 820, 880
TauI GCSGC 5 cut(s) 66, 201, 718, 808, 829
TfiI GAWTC 2 cut(s) 102, 505
Tru1I TTAA 2 cut(s) 83, 913
Tru9I TTAA 2 cut(s) 83, 913
TseFI GTSAC 3 cut(s) 301, 436, 445
TseI GCWGC 4 cut(s) 66, 237, 457, 653
Tsp45I GTSAC 3 cut(s) 301, 436, 445
TspDTI ATGAA 4 cut(s) 92, 101, 125, 693
TspMI CCCGGG 2 cut(s) 533, 809
Tth111I GACNNNGTC 1 cut(s) 191
Van91I CCANNNNNTGG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 432, 635
XapI RAATTY 2 cut(s) 727, 793
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmaI CCCGGG 2 cut(s) 533, 809
XmiI GTMKAC 1 cut(s) 901
XspI CTAG 2 cut(s) 126, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.