Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004329

Physical Location & Seq

Genomic Coordinates Reverse (-)

31590810 .. 31591724

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1245400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGAACCGGTGGTGGGCTGGACAGGTAGGTCTACCGGGAGGAGGAGTAGTGAACGAAACCTCAGCCGTAGCAGCCGCCGGCAGCTCCCCCATGAAAAACCTCATGAAACCAGATCTGGGGATCTCCATGAACACCACCGGAACCAGCAGCCTCGGAGGATCCGGCGGTGACGAAGACGACAACAACAGCGACGATCCCAAGGAAGGAGCCATCGAAGTCGCCACGAGACGACCTAGAGGCCGTCCGCCCGGCTCCAAAAACAAGCCCAAACCCCCAATCTTTGTGACTAGAGATAGCCCTAACGCCCTCCGCAGCCACGTCATGGAGATATCCAGCGGGGCCGACATCGCCGACAGCGTCGCCCAGTTCGCCAGGAGAAGGCAGCGCGGCGTCTGTGTCATGAGTGGGAGCGGCACCGTCATCAACGTCACGCTCAGGCAGCCGTCCGCGCCCGGCGCGGTCATGGCGCTTCACGGGAGGTTCGAGATTTTGTTCTTGACTGGAGCGTTTTTGCCTGGCCCTGCACTGCCTGGTTCAACCGGGTTGACCATATATTTGGCAGGCGGGCAGGGCCAGGTTGTTGGAGGAAGTGTGGTTGGCCCCCTTGTGGCTTCAGGGCCCGTGATGGTGATCGCGGCAACGTTTTCTAATGCGACGTATGAGAGGTTGCCATTGGAGGAGGAAGAAGAGCAAACAGGAGGGGGTACTAGTTCGGGGACTGCAGCGGGAGGTGCGGGGTCGCCGCCGGGGATTGGAGGTGGTGGGATGGGAGACCCGGCGGCATTGGCAGGGATTTATAATTTGCCATCGAATATGCTTCCAAATGGAGGGCAGGCACAGTTGAGCCTTGATCAGCAGGCAGCTTATTCATCTTGGGCTCATGGTCAAGGTGGTGGTAGGCCTCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003677 GO:0003680 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0031348 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF296

Protein Analysis

305

Amino Acids

30.53

Weight (kDa)

5.94

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCC	PF03479	105 - 217	1.9e-22	Plants and Prokaryotes Conserved (PCC) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14465
fragaria_vesca	FvH4_4g03050 FvH4_6g02320
malus_domestica	MD04G1228100.v1.1 MD12G1245400.v1.1 MD13G1209900.v1.1 MD16G1212800.v1.1
prunus_persica	Prupe.1G034400_v2.0.a1 Prupe.6G348200_v2.0.a1
pyrus_communis	pycom04g20250 pycom12g22490 pycom13g18250
rosa_chinensis	RchiOBHm_Chr3g0450081 RchiOBHm_Chr4g0391331
rosa_laevigata	RLG00000009872 RLG00000025758
rosa_multiflora	Rmu_sc0002646.1_g000031 Rmu_sc0005322.1_g000030
rosa_roxburghii	Rroxscaffold_5G00337070 Rroxscaffold_6G00427860
rosa_rugosa	Rorug02G0625300 Rorug03G0335400
rosa_samantha	Rh3AG024400 Rh3BG025000 Rh3CG023900 Rh3DG025000 Rh4AG036500 Rh4BG031200 Rh4CG039800 Rh4DG034200
rosa_wichuraiana	Rw3G001950 Rw4G002860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	801
AasI	GACNNNNNNGTC	1 cut(s)	30
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	414
AccI	GTMKAC	1 cut(s)	34
AccII	CGCG	4 cut(s)	390, 452, 461, 638
AclI	AACGTT	1 cut(s)	644
AclWI	GGATC	4 cut(s)	131, 156, 169, 191
AcuI	CTGAAG	1 cut(s)	600
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	9 cut(s)	16, 44, 119, 206, 325, 381, 610, 755, 830
AgeI	ACCGGT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	540
AhlI	ACTAGT	1 cut(s)	710
AjiI	CACGTC	1 cut(s)	322
AjnI	CCWGG	4 cut(s)	374, 517, 532, 576
AluBI	AGCT	2 cut(s)	87, 866
AluI	AGCT	2 cut(s)	87, 866
Alw26I	GTCTC	2 cut(s)	223, 768
AlwI	GGATC	4 cut(s)	131, 156, 169, 191
AoxI	GGCC	7 cut(s)	241, 342, 520, 574, 601, 620, 902
ApaI	GGGCCC	1 cut(s)	624
ApeKI	GCWGC	8 cut(s)	74, 84, 150, 315, 385, 442, 725, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	541, 573
AsiGI	ACCGGT	1 cut(s)	9
AspLEI	GCGC	4 cut(s)	390, 454, 461, 472
AspS9I	GGNCC	6 cut(s)	342, 521, 574, 602, 620, 621
AsuC2I	CCSGG	6 cut(s)	39, 252, 456, 544, 750, 779
AsuHPI	GGTGA	2 cut(s)	182, 643
BaeGI	GKGCMC	1 cut(s)	624
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	2 cut(s)	624, 883
BauI	CACGAG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	64
BbvI	GCAGC	8 cut(s)	86, 96, 162, 327, 397, 454, 737, 875
BccI	CCATC	4 cut(s)	221, 622, 763, 817
BceAI	ACGGC	3 cut(s)	53, 228, 430
BciT130I	CCWGG	4 cut(s)	376, 519, 534, 578
BclI	TGATCA	1 cut(s)	853
BcnI	CCSGG	6 cut(s)	39, 252, 456, 544, 750, 779
BcoDI	GTCTC	2 cut(s)	223, 768
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	3 cut(s)	237, 291, 711
BfmI	CTRYAG	1 cut(s)	723
BfoI	RGCGCY	1 cut(s)	473
BglII	AGATCT	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	322
BmgT120I	GGNCC	6 cut(s)	342, 521, 574, 602, 620, 621
BmiI	GGNNCC	8 cut(s)	145, 163, 211, 256, 343, 418, 604, 622
BmrI	ACTGGG	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	2 cut(s)	64, 437
BpuMI	CCSGG	6 cut(s)	39, 252, 456, 544, 750, 779
BsaBI	GATNNNNATC	1 cut(s)	632
BsaHI	GRCGYC	1 cut(s)	393
BsaI	GGTCTC	1 cut(s)	768
BsaJI	CCNNGG	3 cut(s)	154, 201, 749
BsaWI	WCCGGW	2 cut(s)	9, 140
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 36, 63, 66, 579, 609
Bsc4I	CCNNNNNNNGG	9 cut(s)	16, 44, 119, 206, 325, 381, 610, 755, 830
Bse118I	RCCGGY	2 cut(s)	9, 80
Bse1I	ACTGG	2 cut(s)	367, 508
Bse8I	GATNNNNATC	1 cut(s)	632
BseBI	CCWGG	4 cut(s)	376, 519, 534, 578
BseDI	CCNNGG	3 cut(s)	154, 201, 749
BseGI	GGATG	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	632
BseLI	CCNNNNNNNGG	9 cut(s)	16, 44, 119, 206, 325, 381, 610, 755, 830
BseMII	CTCAG	2 cut(s)	78, 451
BseNI	ACTGG	2 cut(s)	367, 508
BseRI	GAGGAG	3 cut(s)	57, 60, 695
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	8 cut(s)	86, 96, 162, 327, 397, 454, 737, 875
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	4 cut(s)	390, 452, 461, 638
BshFI	GGCC	7 cut(s)	243, 344, 522, 576, 603, 622, 904
BshNI	GGYRCC	1 cut(s)	416
BshTI	ACCGGT	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	9 cut(s)	16, 44, 119, 206, 325, 381, 610, 755, 830
BsmAI	GTCTC	2 cut(s)	223, 768
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	733
BsnI	GGCC	7 cut(s)	243, 344, 522, 576, 603, 622, 904
Bso31I	GGTCTC	1 cut(s)	768
Bsp120I	GGGCCC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	624, 883
Bsp143I	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
BspANI	GGCC	7 cut(s)	243, 344, 522, 576, 603, 622, 904
BspCNI	CTCAG	2 cut(s)	77, 450
BspFNI	CGCG	4 cut(s)	390, 452, 461, 638
BspHI	TCATGA	2 cut(s)	105, 402
BspLI	GGNNCC	8 cut(s)	145, 163, 211, 256, 343, 418, 604, 622
BspMAI	CTGCAG	1 cut(s)	727
BspPI	GGATC	4 cut(s)	131, 156, 169, 191
BspQI	GCTCTTC	1 cut(s)	684
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	768
BsrBI	CCGCTC	1 cut(s)	414
BsrFI	RCCGGY	2 cut(s)	9, 80
BsrI	ACTGG	2 cut(s)	367, 508
BssAI	RCCGGY	2 cut(s)	9, 80
BssECI	CCNNGG	3 cut(s)	154, 201, 749
BssMI	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	226
Bst2UI	CCWGG	4 cut(s)	376, 519, 534, 578
Bst4CI	ACNGT	2 cut(s)	421, 843
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	82, 565, 569, 837, 861
BstDEI	CTNAG	2 cut(s)	64, 437
BstF5I	GGATG	1 cut(s)	774
BstFNI	CGCG	4 cut(s)	390, 452, 461, 638
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	4 cut(s)	390, 454, 461, 472
BstKTI	GATC	6 cut(s)	118, 126, 164, 199, 636, 856
BstMAI	GTCTC	2 cut(s)	223, 768
BstMBI	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
BstNI	CCWGG	4 cut(s)	376, 519, 534, 578
BstSFI	CTRYAG	1 cut(s)	723
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	4 cut(s)	390, 452, 461, 638
BstV1I	GCAGC	8 cut(s)	86, 96, 162, 327, 397, 454, 737, 875
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	3 cut(s)	115, 123, 161
BstXI	CCANNNNNNTGG	2 cut(s)	559, 584
BstYI	RGATCY	3 cut(s)	115, 123, 161
BsuRI	GGCC	7 cut(s)	243, 344, 522, 576, 603, 622, 904
BtgZI	GCGATG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	774
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	1 cut(s)	527
Cac8I	GCNNGC	5 cut(s)	82, 565, 569, 837, 861
CciI	TCATGA	2 cut(s)	105, 402
CfoI	GCGC	4 cut(s)	390, 454, 461, 472
Cfr10I	RCCGGY	2 cut(s)	9, 80
Cfr13I	GGNCC	6 cut(s)	342, 521, 574, 602, 620, 621
CseI	GACGC	2 cut(s)	349, 382
Csp6I	GTAC	1 cut(s)	708
CspAI	ACCGGT	1 cut(s)	9
CviAII	CATG	7 cut(s)	94, 106, 130, 325, 403, 466, 884
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	2 cut(s)	64, 437
DpnI	GATC	6 cut(s)	117, 125, 163, 198, 635, 855
DpnII	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
DrdI	GACNNNNNNGTC	1 cut(s)	30
DseDI	GACNNNNNNGTC	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
EciI	GGCGGA	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	904
Eco24I	GRGCYC	2 cut(s)	624, 883
Eco31I	GGTCTC	1 cut(s)	768
Eco32I	GATATC	1 cut(s)	333
Eco57I	CTGAAG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRII	CCWGG	4 cut(s)	374, 517, 532, 576
EcoRV	GATATC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	624, 883
ErhI	CCWWGG	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	7 cut(s)	97, 109, 133, 328, 406, 469, 887
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	7 cut(s)	93, 105, 129, 324, 402, 465, 883
FauI	CCCGC	4 cut(s)	332, 560, 721, 730
FbaI	TGATCA	1 cut(s)	853
FblI	GTMKAC	1 cut(s)	34
FokI	GGATG	1 cut(s)	781
FriOI	GRGCYC	2 cut(s)	624, 883
FspBI	CTAG	3 cut(s)	237, 291, 711
GlaI	GCGC	4 cut(s)	389, 453, 460, 471
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	7 cut(s)	243, 344, 522, 576, 603, 622, 904
HgaI	GACGC	2 cut(s)	349, 382
HhaI	GCGC	4 cut(s)	390, 454, 461, 472
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	7 cut(s)	97, 109, 133, 328, 406, 469, 887
Hin6I	GCGC	4 cut(s)	388, 452, 459, 470
HinP1I	GCGC	4 cut(s)	388, 452, 459, 470
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HphI	GGTGA	2 cut(s)	182, 643
Hpy166II	GTNNAC	3 cut(s)	35, 55, 549
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	4 cut(s)	106, 403, 487, 499
Hpy8I	GTNNAC	3 cut(s)	35, 55, 549
Hpy99I	CGWCG	3 cut(s)	197, 365, 661
HpyAV	CCTTC	2 cut(s)	200, 375
HpyCH4III	ACNGT	2 cut(s)	421, 843
HpyCH4IV	ACGT	4 cut(s)	321, 429, 644, 659
HpyCH4V	TGCA	2 cut(s)	527, 725
HpyF3I	CTNAG	2 cut(s)	64, 437
HpySE526I	ACGT	4 cut(s)	321, 429, 644, 659
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	7 cut(s)	97, 109, 133, 328, 406, 469, 887
HspAI	GCGC	4 cut(s)	388, 452, 459, 470
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Ksp22I	TGATCA	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	5 cut(s)	92, 209, 260, 411, 506
Lsp1109I	GCAGC	8 cut(s)	86, 96, 162, 327, 397, 454, 737, 875
MaeI	CTAG	3 cut(s)	237, 291, 711
MaeII	ACGT	4 cut(s)	321, 429, 644, 659
MaeIII	GTNAC	3 cut(s)	170, 286, 430
MalI	GATC	6 cut(s)	117, 125, 163, 198, 635, 855
MbiI	CCGCTC	1 cut(s)	414
MboI	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
MboII	GAAGA	3 cut(s)	188, 698, 701
MflI	RGATCY	3 cut(s)	115, 123, 161
MhlI	GDGCHC	2 cut(s)	624, 883
MluCI	AATT	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	565
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	1 cut(s)	913
MspA1I	CMGCKG	2 cut(s)	339, 728
MvaI	CCWGG	4 cut(s)	376, 519, 534, 578
MvnI	CGCG	4 cut(s)	390, 452, 461, 638
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	6 cut(s)	39, 252, 456, 544, 750, 779
NdeII	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	7 cut(s)	97, 109, 133, 328, 406, 469, 887
NlaIV	GGNNCC	8 cut(s)	145, 163, 211, 256, 343, 418, 604, 622
NmuCI	GTSAC	3 cut(s)	170, 286, 430
PagI	TCATGA	2 cut(s)	105, 402
PceI	AGGCCT	1 cut(s)	904
PciSI	GCTCTTC	1 cut(s)	684
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 483
PdiI	GCCGGC	1 cut(s)	82
PflFI	GACNNNGTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	9
PsiI	TTATAA	1 cut(s)	801
Psp1406I	AACGTT	1 cut(s)	644
Psp6I	CCWGG	4 cut(s)	374, 517, 532, 576
PspGI	CCWGG	4 cut(s)	374, 517, 532, 576
PspN4I	GGNNCC	8 cut(s)	145, 163, 211, 256, 343, 418, 604, 622
PspOMI	GGGCCC	1 cut(s)	620
PspPI	GGNCC	6 cut(s)	342, 521, 574, 602, 620, 621
PstI	CTGCAG	1 cut(s)	727
PsuI	RGATCY	3 cut(s)	115, 123, 161
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	913
Sau3AI	GATC	6 cut(s)	115, 123, 161, 196, 633, 853
Sau96I	GGNCC	6 cut(s)	342, 521, 574, 602, 620, 621
SduI	GDGCHC	2 cut(s)	624, 883
SfcI	CTRYAG	1 cut(s)	723
SpeI	ACTAGT	1 cut(s)	710
Sse9I	AATT	1 cut(s)	802
SseBI	AGGCCT	1 cut(s)	904
SspMI	CTAG	3 cut(s)	237, 291, 711
StuI	AGGCCT	1 cut(s)	904
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	421, 843
TaiI	ACGT	4 cut(s)	324, 432, 647, 662
TaqI	TCGA	3 cut(s)	216, 486, 812
TasI	AATT	1 cut(s)	802
TauI	GCSGC	6 cut(s)	80, 393, 417, 641, 748, 785
Tru1I	TTAA	1 cut(s)	913
Tru9I	TTAA	1 cut(s)	913
TscAI	CASTG	1 cut(s)	534
TseFI	GTSAC	3 cut(s)	170, 286, 430
TseI	GCWGC	8 cut(s)	74, 84, 150, 315, 385, 442, 725, 863
Tsp45I	GTSAC	3 cut(s)	170, 286, 430
TspDTI	ATGAA	4 cut(s)	110, 122, 146, 861
TspRI	CASTG	1 cut(s)	534
Tth111I	GACNNNGTC	1 cut(s)	359
Van91I	CCANNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	3 cut(s)	237, 291, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.