AT4G14920

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007814
Physical Location & Seq
Reverse (-)
8530809 .. 8536408
5600 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G14920.1

Sequence Viewer

Length: 3417 bp
ATGGATAGAGGTGGGAGGAGATCTGGTGAATCTCCAGGGGTATTGATTAAGAAGAGAAGTTCTTCTGGTTGCTTAATTGTGAAGAAGAACGATGGTGTTGGTAGGATTTGTTCGTTTTCAGAGAGTCGTCCGAATTGGGAGTCCAATAAGAGGTCTAGGATGATTACGAGTGACTCTGAGTCTAGCGATAGATTTACCATCCCTCGAAATATGCGCCAGTATCGTAATGTAGAAGAGAGTCGTTTTGGATGGAAAAGAGATTGTGTTGAAGGGAAAGGGGATGATTGTTTTGTGGGGAATAGTAGAGAGTGGAAGGAGAGTAAGAGACATAGATTAGATGATGATGATGACAATGATGATGATGAGGAGAGTGAAGATGAATTGATGGCAATGAGGATGAGGAGGTCGTTTGATGGAAGTGGTGTTGATATTGGTAAGAAAGCTTATTTGGGGTCTGCTCACTTTGCTAATGATAGGGAATATGGAACTGGTTCTAGTCGTAAAGGTTTAGATATTGAGAAGAGAAGAAAACCGTATTTAGATGGATCAGGGAACATAGGTTTTGGTAATCAAGGTTATAGAAACAGGTGTAAGGTGAGTGGAAACGAAGCTAAAACTACTCATGCGTTGTTGTTGCAGAAGAAGTACAAGCGTGACATGAATTTTGATGAACCAATCAGGGTGCAGGGGAAAAATGGTGTCCTCAAGGTGATGGTGAACAAGCAGAATAAGATAGGAGGGTTACTGCAAAATGCGAAAGCTGAACAAACTCAATGTGGCTCAACGATTCAAGAGACTGGTAAAATACGTGTTGCTATCCAGTTGCCAAACACTTTAAAAACTGAAAAGTTGCCGAAACTGCCTCCCCCAGCCAGAATACAGTCAAATGGGCTAAAACTGCCCATGTCCTTAACCATGAAGAGTAAGGGACAGAACCAAGATTCTGAAGATAGTGATAGCTCGGGCCGGCTGCAGAAAAGAATAATACAACCTCATAAGCCCTCTCAGATGTCAAGCACTGGAGGAGAAAAGACATTACCTGAAGCGTCAATGCCTTCCAAAATTAGAGATGGAAAGATTAGGCGTGGTTCAGGCACAGAAAAACAAAGATTACGTGAGCGAATTAGGGAAATGTTACTGGAAGCAGGGTGGACGATTGACTACAGACCTAGGAGGAATAGAGACTACCTAGATGCAGTTTATATAAGTCCCAGGGGAACAGCGTATTGGTCTATTATCAAGGCTTATGAAGCACTTCTGAAGCAGTTAAATAGTGGGGAAAAAGTTGCCAAGCCTTGTGACGATAGTTCCACATTTTCTCTGATATCAGATGAGATACTCAGTCAGTTAACAAGGAAAACCAAAAGTAAGATTGAAAAAGATATGAAAAGGGAGCTACACTCTGCCAGTGATAGTGATGGAAAAGCGACTTTTGCAAGGAATTTCCTAGCTATTAAAAATGAAGTAGGAAACGATGACAGGTATGTTCATAAACAACAGCGAAATGTCATGTCAGTGAAGAATGAGGTCAACAGCAGAGATAGTTCACAGGGTACAACTTCAAAAAGTGAAAGCCCTTTGCATCACCAAACTGAAAAGTCAACTGGTTCCTCCTCTCACCGTGTGGATGGAGGGAAAAGTAGCAAACATGGTAGGAGTACACTGTTGGTGCGGCGTTCAGTCAGAGGAGATAATTCAGAGAGTGATGGTTTTGTACCCTCATCTGAAAAACGGACGGTACTGGCATGGCTGATTGATAGTGGAACCTTACAGTTGAGTGAAAAGGTAATGTACATGAACCAACGCCGGACACGCGCCATGCTTGAGGGTTGGATAACAAGAGACGGGATTCACTGTGGTTGCTGTAGTAAAATTCTTGCGGTTTCGAAGTTTGAGATACATGCTGGAAGCAAATTGCGGCAGCCATTTCAGAACATATTTTTGAATTCTGGGGTTTCTCTTCTTCAATGCCAAATAGATGCATGGGATAAGCAAAAGGGTGCTGGGAACATTGGTTTTTGTTCAGTAGATGTAATTGCTGATGATCCAAATGACGATGCTTGTGGTATTTGTGGAGATGGAGGTGATTTAGTTTGCTGTGATGGTTGTCCCTCAACTTTCCACCAAAGATGCCTAGACATACGGATGTTTCCTCTTGGTGATTGGCATTGCCCCAATTGTACATGCAAATTCTGTAAGGCAGTTATTGAAGATGTTACTCAGACTGTGGGTGCAAATACCTGCAAAATGTGTGAGAAAAAATATCACAAATCATGCATGCCCAAGGCAAATGTTACCCCAGCTGATACCACTGAACCAATCACCTCTTTTTGTGGGAAGAAGTGCAAAGCGCTCTCCGAAGGTGTCAAGAAGTATGTTGGTGTCAAACATGAGTTGGAAGCTGGATTTTCATGGTCTCTAGTTCATAGGGAATGCACAAATTCAGATTTATCCTTAAGTGGACACCCTCATATTGTGGAAAACAATTCCAAGCTTGCATTAGCTTTGACAGTCATGGATGAATGCTTTCTGCCCATTATTGACAGGAGGAGTGGGGTGAATATAGTACAAAATGTCCTTTACAATTGTGGGTCCAACTTCAATCGGCTGAACTTTGGTGGATTCTATACTGCTCTTCTTGAAAGAGGCGACGAAATAGTTGCTTCAGCATCTATTAGATTTCATGGTAACCGTCTAGCTGAGATGCCGTTCATTGGAACTCGGCATGTCTACAGACACCAAGGGATGTGCCGGCGGCTTTTCAGCGTAGTTGAATCAGCTCTTCAACATCTCAAAGTCAAATTACTAATTATCCCTGCAACTGCCGACTTTAGCCATGTTTGGATATCCAAATTCGGGTTTCGACAAGTCGAGGATTCTCTGAAGAAAGAAATGCGGTCCATGAATCTGCTAACCTTCCCTGGCATTGATGTGTTACAGAAAGAGCTGTTAGCACCACGACATACCGAGTCTGCTGTCGACACAGACTGTGACCCATGCAATGAAGGCACTAATTCAGCGATCAAGACTAATGAAGTTTCCGTCTTGGAGACCACATCACCGTCAAGAGATAAACCGGTATCAGATTATTTGGTCGAACACCAACCATATGAGGATGTAAGTTCTGCTTCCCGGGATAGTCTAGTCCACGATGGTTACCCCAAAATGCTAGAGACTGCGTTCAAAACTTCAACCATGGCGAGATCATCAGATATGGAGAAGCACATGGACTGCAAAACTTCCTATAGTCGATTTGATGGAGAAGATGAGGAAGATAGTTTAATTGAGTCTCCTCCTCAACGAAACAGCGACATGGCTTTCTTAGATCACATCATCCGCTCTCCGGTAGACACTGGTGCAACGGAAAACAGAGATGTCTATGGTTCAGGGGATGACGATTCTCCGGAAACGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1138

Amino Acids

127.31

Weight (kDa)

8.61

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 362 - 422 5.6e-15 Domain of unknown function (DUF7028)
TDBD PF16135 610 - 660 5.9e-21 Tify domain binding domain
PHD PF00628 688 - 727 1.2e-06 PHD-finger
IDM1_C PF23209 843 - 982 2.1e-54 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2249
AccBSI CCGCTC 1 cut(s) 3339
AccI GTMKAC 3 cut(s) 2730, 2979, 3348
AccII CGCG 1 cut(s) 1815
AccIII TCCGGA 1 cut(s) 3403
AciI CCGC 6 cut(s) 1672, 1880, 1918, 2755, 2896, 3337
AclWI GGATC 2 cut(s) 553, 2039
AcsI RAATTY 7 cut(s) 661, 1441, 1872, 1945, 2189, 2440, 2852
AcuI CTGAAG 5 cut(s) 966, 1062, 1280, 2649, 2903
AdeI CACNNNGTG 1 cut(s) 1624
AfaI GTAC 8 cut(s) 647, 1555, 1660, 1716, 1740, 1793, 2182, 2568
AfeI AGCGCT 1 cut(s) 2352
AfiI CCNNNNNNNGG 4 cut(s) 150, 2714, 2856, 3343
AflII CTTAAG 1 cut(s) 2455
AflIII ACRYGT 1 cut(s) 808
AgeI ACCGGT 1 cut(s) 3076
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 3 cut(s) 34, 1211, 2920
AjuI GAANNNNNNNTTGG 4 cut(s) 431, 463, 1210, 1242
Alw26I GTCTC 8 cut(s) 319, 788, 1176, 1836, 2421, 3044, 3167, 3294
AlwI GGATC 2 cut(s) 553, 2039
Ama87I CYCGRG 2 cut(s) 961, 3132
Aor13HI TCCGGA 1 cut(s) 3403
Aor51HI AGCGCT 1 cut(s) 2352
AoxI GGCC 1 cut(s) 964
ApeKI GCWGC 2 cut(s) 970, 1921
ApoI RAATTY 7 cut(s) 661, 1441, 1872, 1945, 2189, 2440, 2852
ArsI GACNNNNNNTTYG 4 cut(s) 125, 157, 647, 679
AsiGI ACCGGT 1 cut(s) 3076
Asp700I GAANNNNTTC 4 cut(s) 61, 490, 1254, 2526
AspA2I CCTAGG 1 cut(s) 1169
AspLEI GCGC 3 cut(s) 216, 1817, 2353
AspS9I GGNCC 3 cut(s) 964, 2592, 2898
AsuC2I CCSGG 2 cut(s) 3133, 3134
AsuII TTCGAA 1 cut(s) 1886
AvaI CYCGRG 2 cut(s) 961, 3132
AvaII GGWCC 2 cut(s) 2592, 2898
AvrII CCTAGG 1 cut(s) 1169
BbvI GCAGC 2 cut(s) 957, 1933
BceAI ACGGC 1 cut(s) 2692
BcgI CGANNNNNNTGC 2 cut(s) 2642, 2676
BciT130I CCWGG 3 cut(s) 36, 1213, 2922
BcnI CCSGG 2 cut(s) 3133, 3134
BcoDI GTCTC 8 cut(s) 319, 788, 1176, 1836, 2421, 3044, 3167, 3294
BfmI CTRYAG 5 cut(s) 971, 1162, 1864, 2731, 3244
BfoI RGCGCY 1 cut(s) 2354
BfrI CTTAAG 1 cut(s) 2455
BfuAI ACCTGC 1 cut(s) 2249
BglII AGATCT 1 cut(s) 20
BisI GCNGC 5 cut(s) 971, 1673, 1919, 1922, 2756
BlnI CCTAGG 1 cut(s) 1169
BlsI GCNGC 5 cut(s) 972, 1674, 1920, 1923, 2757
Bme1390I CCNGG 5 cut(s) 36, 1213, 2922, 3133, 3134
Bme18I GGWCC 2 cut(s) 2592, 2898
BmeRI GACNNNNNGTC 1 cut(s) 178
BmeT110I CYCGRG 2 cut(s) 961, 3132
BmgT120I GGNCC 3 cut(s) 964, 2592, 2898
BmiI GGNNCC 3 cut(s) 1609, 1765, 2593
BmrFI CCNGG 5 cut(s) 36, 1213, 2922, 3133, 3134
BmsI GCATC 7 cut(s) 1183, 1591, 1969, 2047, 2120, 2678, 2694
BplI GAGNNNNNCTC 2 cut(s) 1385, 1417
BpmI CTGGAG 2 cut(s) 18, 1041
Bpu14I TTCGAA 1 cut(s) 1886
BpuEI CTTGAG 2 cut(s) 689, 1844
BpuMI CCSGG 2 cut(s) 3133, 3134
BsaAI YACGTR 2 cut(s) 809, 1115
BsaI GGTCTC 2 cut(s) 2421, 3044
BsaJI CCNNGG 9 cut(s) 35, 1169, 1211, 1212, 2283, 2740, 2920, 3132, 3195
BsaWI WCCGGW 3 cut(s) 3076, 3343, 3403
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 2714, 2856, 3343
Bse118I RCCGGY 3 cut(s) 966, 2751, 3076
Bse3DI GCAATG 3 cut(s) 396, 2167, 3007
BseAI TCCGGA 1 cut(s) 3403
BseBI CCWGG 3 cut(s) 36, 1213, 2922
BseDI CCNNGG 9 cut(s) 35, 1169, 1211, 1212, 2283, 2740, 2920, 3132, 3195
BseLI CCNNNNNNNGG 4 cut(s) 150, 2714, 2856, 3343
BseMI GCAATG 3 cut(s) 396, 2167, 3007
BseMII CTCAG 5 cut(s) 168, 1019, 1354, 2234, 2691
BseRI GAGGAG 9 cut(s) 31, 380, 415, 1038, 1603, 1701, 2563, 3282, 3285
BseXI GCAGC 2 cut(s) 957, 1933
BseYI CCCAGC 3 cut(s) 868, 2003, 2299
BsgI GTGCAG 1 cut(s) 704
Bsh1236I CGCG 1 cut(s) 1815
BshFI GGCC 1 cut(s) 966
BshTI ACCGGT 1 cut(s) 3076
BsiHKCI CYCGRG 2 cut(s) 961, 3132
BsiSI CCGG 7 cut(s) 967, 1807, 2752, 3077, 3133, 3344, 3404
BslFI GGGAC 3 cut(s) 942, 1194, 2094
BslI CCNNNNNNNGG 4 cut(s) 150, 2714, 2856, 3343
BsmAI GTCTC 8 cut(s) 319, 788, 1176, 1836, 2421, 3044, 3167, 3294
BsmBI CGTCTC 1 cut(s) 1836
BsmFI GGGAC 3 cut(s) 942, 1194, 2094
BsmI GAATGC 2 cut(s) 2438, 2528
BsnI GGCC 1 cut(s) 966
Bso31I GGTCTC 2 cut(s) 2421, 3044
BsoBI CYCGRG 2 cut(s) 961, 3132
Bsp119I TTCGAA 1 cut(s) 1886
Bsp13I TCCGGA 1 cut(s) 3403
Bsp1407I TGTACA 2 cut(s) 1791, 2180
Bsp143I GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
Bsp19I CCATGG 1 cut(s) 3195
BspACI CCGC 6 cut(s) 1672, 1880, 1918, 2755, 2896, 3337
BspANI GGCC 1 cut(s) 966
BspCNI CTCAG 5 cut(s) 169, 1018, 1353, 2233, 2692
BspEI TCCGGA 1 cut(s) 3403
BspFNI CGCG 1 cut(s) 1815
BspLI GGNNCC 3 cut(s) 1609, 1765, 2593
BspMAI CTGCAG 1 cut(s) 975
BspMI ACCTGC 1 cut(s) 2249
BspPI GGATC 2 cut(s) 553, 2039
BspQI GCTCTTC 2 cut(s) 2640, 2787
BspT104I TTCGAA 1 cut(s) 1886
BspTI CTTAAG 1 cut(s) 2455
BspTNI GGTCTC 2 cut(s) 2421, 3044
BsrBI CCGCTC 1 cut(s) 3339
BsrDI GCAATG 3 cut(s) 396, 2167, 3007
BsrFI RCCGGY 3 cut(s) 966, 2751, 3076
BsrGI TGTACA 2 cut(s) 1791, 2180
BssAI RCCGGY 3 cut(s) 966, 2751, 3076
BssECI CCNNGG 9 cut(s) 35, 1169, 1211, 1212, 2283, 2740, 2920, 3132, 3195
BssMI GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
BssT1I CCWWGG 4 cut(s) 1169, 2283, 2740, 3195
Bst2UI CCWGG 3 cut(s) 36, 1213, 2922
Bst6I CTCTTC 7 cut(s) 47, 228, 515, 914, 1965, 2640, 2787
BstAFI CTTAAG 1 cut(s) 2455
BstAUI TGTACA 2 cut(s) 1791, 2180
BstBAI YACGTR 2 cut(s) 809, 1115
BstBI TTCGAA 1 cut(s) 1886
BstC8I GCNNGC 4 cut(s) 968, 2279, 2496, 2753
BstDEI CTNAG 6 cut(s) 177, 1005, 1340, 2220, 2700, 3322
BstDSI CCRYGG 1 cut(s) 3195
BstEII GGTNACC 2 cut(s) 2687, 3155
BstFNI CGCG 1 cut(s) 1815
BstH2I RGCGCY 1 cut(s) 2354
BstHHI GCGC 3 cut(s) 216, 1817, 2353
BstKTI GATC 6 cut(s) 23, 548, 2047, 3024, 3206, 3328
BstMAI GTCTC 8 cut(s) 319, 788, 1176, 1836, 2421, 3044, 3167, 3294
BstMBI GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
BstMWI GCNNNNNNNGC 7 cut(s) 464, 859, 898, 1250, 1433, 1812, 3006
BstNI CCWGG 3 cut(s) 36, 1213, 2922
BstNSI RCATGY 4 cut(s) 1904, 2187, 2281, 2729
BstPI GGTNACC 2 cut(s) 2687, 3155
BstSCI CCNGG 5 cut(s) 34, 1211, 2920, 3131, 3132
BstSFI CTRYAG 5 cut(s) 971, 1162, 1864, 2731, 3244
BstUI CGCG 1 cut(s) 1815
BstV1I GCAGC 2 cut(s) 957, 1933
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 966
BtgI CCRYGG 1 cut(s) 3195
BtsIMutI CAGTG 7 cut(s) 1017, 1414, 1521, 1661, 1852, 2310, 3351
BveI ACCTGC 1 cut(s) 2249
Cac8I GCNNGC 4 cut(s) 968, 2279, 2496, 2753
CfoI GCGC 3 cut(s) 216, 1817, 2353
Cfr10I RCCGGY 3 cut(s) 966, 2751, 3076
Cfr13I GGNCC 3 cut(s) 964, 2592, 2898
Cfr9I CCCGGG 1 cut(s) 3132
CseI GACGC 1 cut(s) 1035
Csp6I GTAC 8 cut(s) 646, 1554, 1659, 1715, 1739, 1792, 2181, 2567
CspAI ACCGGT 1 cut(s) 3076
CviQI GTAC 8 cut(s) 646, 1554, 1659, 1715, 1739, 1792, 2181, 2567
DdeI CTNAG 6 cut(s) 177, 1005, 1340, 2220, 2700, 3322
DpnI GATC 6 cut(s) 22, 547, 2046, 3023, 3205, 3327
DpnII GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
DraI TTTAAA 1 cut(s) 837
DraIII CACNNNGTG 1 cut(s) 1624
DriI GACNNNNNGTC 1 cut(s) 178
Eam1104I CTCTTC 7 cut(s) 47, 228, 515, 914, 1965, 2640, 2787
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 7 cut(s) 47, 228, 515, 914, 1965, 2640, 2787
Eco130I CCWWGG 4 cut(s) 1169, 2283, 2740, 3195
Eco31I GGTCTC 2 cut(s) 2421, 3044
Eco32I GATATC 2 cut(s) 1326, 2847
Eco47I GGWCC 2 cut(s) 2592, 2898
Eco47III AGCGCT 1 cut(s) 2352
Eco57I CTGAAG 5 cut(s) 966, 1062, 1280, 2649, 2903
Eco88I CYCGRG 2 cut(s) 961, 3132
Eco91I GGTNACC 2 cut(s) 2687, 3155
EcoO65I GGTNACC 2 cut(s) 2687, 3155
EcoRI GAATTC 1 cut(s) 1945
EcoRII CCWGG 3 cut(s) 34, 1211, 2920
EcoRV GATATC 2 cut(s) 1326, 2847
EcoT14I CCWWGG 4 cut(s) 1169, 2283, 2740, 3195
EcoT22I ATGCAT 2 cut(s) 1984, 2279
ErhI CCWWGG 4 cut(s) 1169, 2283, 2740, 3195
Esp3I CGTCTC 1 cut(s) 1836
FalI AAGNNNNNCTT 2 cut(s) 3112, 3144
FaqI GGGAC 3 cut(s) 942, 1194, 2094
FauNDI CATATG 1 cut(s) 3109
FblI GTMKAC 3 cut(s) 2730, 2979, 3348
Fnu4HI GCNGC 5 cut(s) 971, 1673, 1919, 1922, 2756
Fsp4HI GCNGC 5 cut(s) 971, 1673, 1919, 1922, 2756
GlaI GCGC 3 cut(s) 215, 1816, 2352
GluI GCNGC 5 cut(s) 971, 1673, 1919, 1922, 2756
GsaI CCCAGC 3 cut(s) 872, 2007, 2303
GsuI CTGGAG 2 cut(s) 18, 1041
HaeII RGCGCY 1 cut(s) 2354
HaeIII GGCC 1 cut(s) 966
HapII CCGG 7 cut(s) 967, 1807, 2752, 3077, 3133, 3344, 3404
HgaI GACGC 1 cut(s) 1035
HhaI GCGC 3 cut(s) 216, 1817, 2353
Hin6I GCGC 3 cut(s) 214, 1815, 2351
HinP1I GCGC 3 cut(s) 214, 1815, 2351
HincII GTYRAC 4 cut(s) 1350, 1531, 1602, 2980
HindII GTYRAC 4 cut(s) 1350, 1531, 1602, 2980
HindIII AAGCTT 2 cut(s) 441, 2492
HpaI GTTAAC 1 cut(s) 1350
HpaII CCGG 7 cut(s) 967, 1807, 2752, 3077, 3133, 3344, 3404
Hpy188III TCNNGA 6 cut(s) 791, 2368, 2639, 3025, 3066, 3404
Hpy99I CGWCG 1 cut(s) 2654
HpyAV CCTTC 6 cut(s) 263, 307, 1065, 2354, 2926, 2999
HpyCH4IV ACGT 2 cut(s) 808, 1114
HpyF10VI GCNNNNNNNGC 7 cut(s) 464, 859, 898, 1250, 1433, 1812, 3006
HpyF3I CTNAG 6 cut(s) 177, 1005, 1340, 2220, 2700, 3322
HpySE526I ACGT 2 cut(s) 808, 1114
HspAI GCGC 3 cut(s) 214, 1815, 2351
Kpn2I TCCGGA 1 cut(s) 3403
KroI GCCGGC 2 cut(s) 966, 2751
KroNI GCCGGC 2 cut(s) 968, 2753
KspAI GTTAAC 1 cut(s) 1350
Kzo9I GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
LguI GCTCTTC 2 cut(s) 2640, 2787
LmnI GCTCC 1 cut(s) 1393
Lsp1109I GCAGC 2 cut(s) 957, 1933
LweI GCATC 7 cut(s) 1183, 1591, 1969, 2047, 2120, 2678, 2694
MaeII ACGT 2 cut(s) 808, 1114
MalI GATC 6 cut(s) 22, 547, 2046, 3023, 3205, 3327
MbiI CCGCTC 1 cut(s) 3339
MboI GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
MfeI CAATTG 2 cut(s) 2176, 2584
MflI RGATCY 1 cut(s) 20
MlyI GAGTC 7 cut(s) 133, 149, 167, 188, 247, 2978, 3296
MmeI TCCRAC 3 cut(s) 1811, 2376, 2619
Mph1103I ATGCAT 2 cut(s) 1984, 2279
MroI TCCGGA 1 cut(s) 3403
MroNI GCCGGC 2 cut(s) 966, 2751
MroXI GAANNNNTTC 4 cut(s) 61, 490, 1254, 2526
MseI TTAA 9 cut(s) 48, 74, 836, 911, 1268, 1349, 1455, 2456, 3281
MslI CAYNNNNRTG 3 cut(s) 1514, 2144, 2930
MspA1I CMGCKG 1 cut(s) 2303
MspCI CTTAAG 1 cut(s) 2455
MspI CCGG 7 cut(s) 967, 1807, 2752, 3077, 3133, 3344, 3404
MspR9I CCNGG 5 cut(s) 36, 1213, 2922, 3133, 3134
MunI CAATTG 2 cut(s) 2176, 2584
Mva1269I GAATGC 2 cut(s) 2438, 2528
MvaI CCWGG 3 cut(s) 36, 1213, 2922
MvnI CGCG 1 cut(s) 1815
MwoI GCNNNNNNNGC 7 cut(s) 464, 859, 898, 1250, 1433, 1812, 3006
NaeI GCCGGC 2 cut(s) 968, 2753
NciI CCSGG 2 cut(s) 3133, 3134
NcoI CCATGG 1 cut(s) 3195
NdeI CATATG 1 cut(s) 3109
NdeII GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
NgoMIV GCCGGC 2 cut(s) 966, 2751
NlaIV GGNNCC 3 cut(s) 1609, 1765, 2593
NmeAIII GCCGAG 1 cut(s) 2701
NmuCI GTSAC 4 cut(s) 170, 653, 1298, 2990
NsiI ATGCAT 2 cut(s) 1984, 2279
NspI RCATGY 4 cut(s) 1904, 2187, 2281, 2729
NspV TTCGAA 1 cut(s) 1886
PaeI GCATGC 1 cut(s) 2281
PasI CCCWGGG 1 cut(s) 1212
PciSI GCTCTTC 2 cut(s) 2640, 2787
PctI GAATGC 2 cut(s) 2438, 2528
PdiI GCCGGC 2 cut(s) 968, 2753
PdmI GAANNNNTTC 4 cut(s) 61, 490, 1254, 2526
PfeI GAWTC 9 cut(s) 29, 787, 941, 1849, 2622, 2774, 2876, 2905, 3398
PinAI ACCGGT 1 cut(s) 3076
PkrI GCNGC 5 cut(s) 972, 1674, 1920, 1923, 2757
PleI GAGTC 7 cut(s) 132, 148, 167, 187, 246, 2977, 3295
PpsI GAGTC 7 cut(s) 132, 148, 167, 187, 246, 2977, 3295
Ppu21I YACGTR 2 cut(s) 809, 1115
Psp6I CCWGG 3 cut(s) 34, 1211, 2920
PspEI GGTNACC 2 cut(s) 2687, 3155
PspFI CCCAGC 3 cut(s) 868, 2003, 2299
PspGI CCWGG 3 cut(s) 34, 1211, 2920
PspN4I GGNNCC 3 cut(s) 1609, 1765, 2593
PspPI GGNCC 3 cut(s) 964, 2592, 2898
PsrI GAACNNNNNNTAC 2 cut(s) 94, 126
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 1 cut(s) 20
PvuII CAGCTG 1 cut(s) 2303
RsaI GTAC 8 cut(s) 647, 1555, 1660, 1716, 1740, 1793, 2182, 2568
RsaNI GTAC 8 cut(s) 646, 1554, 1659, 1715, 1739, 1792, 2181, 2567
RseI CAYNNNNRTG 3 cut(s) 1514, 2144, 2930
SalI GTCGAC 1 cut(s) 2978
SapI GCTCTTC 2 cut(s) 2640, 2787
SaqAI TTAA 9 cut(s) 48, 74, 836, 911, 1268, 1349, 1455, 2456, 3281
SatI GCNGC 5 cut(s) 971, 1673, 1919, 1922, 2756
Sau3AI GATC 6 cut(s) 20, 545, 2044, 3021, 3203, 3325
Sau96I GGNCC 3 cut(s) 964, 2592, 2898
SchI GAGTC 7 cut(s) 133, 149, 167, 188, 247, 2978, 3296
ScrFI CCNGG 5 cut(s) 36, 1213, 2922, 3133, 3134
SfaNI GCATC 7 cut(s) 1183, 1591, 1969, 2047, 2120, 2678, 2694
SfcI CTRYAG 5 cut(s) 971, 1162, 1864, 2731, 3244
SfuI TTCGAA 1 cut(s) 1886
SinI GGWCC 2 cut(s) 2592, 2898
SmaI CCCGGG 1 cut(s) 3134
SmiMI CAYNNNNRTG 3 cut(s) 1514, 2144, 2930
SmlI CTYRAG 3 cut(s) 704, 1823, 2455
SmoI CTYRAG 3 cut(s) 704, 1823, 2455
SphI GCATGC 1 cut(s) 2281
SsiI CCGC 6 cut(s) 1672, 1880, 1918, 2755, 2896, 3337
StyD4I CCNGG 5 cut(s) 34, 1211, 2920, 3131, 3132
StyI CCWWGG 4 cut(s) 1169, 2283, 2740, 3195
TaiI ACGT 2 cut(s) 811, 1117
TaqI TCGA 7 cut(s) 205, 1886, 2863, 2871, 2979, 3096, 3250
TatI WGTACW 5 cut(s) 645, 1658, 1791, 2180, 2566
TauI GCSGC 3 cut(s) 1675, 1921, 2758
TfiI GAWTC 9 cut(s) 29, 787, 941, 1849, 2622, 2774, 2876, 2905, 3398
Tru1I TTAA 9 cut(s) 48, 74, 836, 911, 1268, 1349, 1455, 2456, 3281
Tru9I TTAA 9 cut(s) 48, 74, 836, 911, 1268, 1349, 1455, 2456, 3281
TscAI CASTG 7 cut(s) 1024, 1414, 1521, 1668, 1859, 2317, 3358
TseFI GTSAC 4 cut(s) 170, 653, 1298, 2990
TseI GCWGC 2 cut(s) 970, 1921
Tsp45I GTSAC 4 cut(s) 170, 653, 1298, 2990
TspGWI ACGGA 4 cut(s) 1747, 2158, 3031, 3377
TspMI CCCGGG 1 cut(s) 3132
TspRI CASTG 7 cut(s) 1024, 1414, 1521, 1668, 1859, 2317, 3358
Vha464I CTTAAG 1 cut(s) 2455
VpaK11BI GGWCC 2 cut(s) 2592, 2898
XapI RAATTY 7 cut(s) 661, 1441, 1872, 1945, 2189, 2440, 2852
XceI RCATGY 4 cut(s) 1904, 2187, 2281, 2729
XmaI CCCGGG 1 cut(s) 3132
XmaJI CCTAGG 1 cut(s) 1169
XmiI GTMKAC 3 cut(s) 2730, 2979, 3348
XmnI GAANNNNTTC 4 cut(s) 61, 490, 1254, 2526
Zsp2I ATGCAT 2 cut(s) 1984, 2279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.