Rh4CG213300

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0007814
Physical Location & Seq
Forward (+)
44349640 .. 44357187
7548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG213300.1

Sequence Viewer

Length: 4668 bp
ATGGACGAAGGTGTGAGATCTGTTGGCCCTTCAGGGGTGTTGGTGAAGAATAGGAATTCTTCGGGGTGTTTAATTGTGAGGAAGAAGCCCGATGGGGTTAGTGGTGGCGTTGGTTCTTCGAGTTCTCGGAAGGTTTTCGAATCGAAGAAGGAGAAGAAGAGGTCGAGGTTGGTGATGAGTGATTCAGGGTCGAGTGATGAGCTGTTGATGCCGAGGAGGAAAGTTGGGCCGGAGACTATTCGGGTTTGTAATGGTTTAGACAAGGGCATTGTGGAAGGGAGCGGAATGGTTCCGAAGAGGGAGAGACTGGGGCATGGTAGGCGGAATGAGGATGGTATGATTGGTACAAATTATTTGGATGATGGGGGAGGAAGGAGAACTAATTTGGAGGTGTTTGAGTTCAATGAGTATGATGGGATTGAGGGACAACCGATGCGGAGGAGTCGGTTCGGCGATGGAGTTATCGGAGTTGAATTTGGGGAGAGAAGATATGCGGGATCCATGCATGTACCCCGAAGTGGCATTAAGAGGGAATTTGAGACTGGTTCAAGTAGACATCTTGTTGACAAGAGAAAGAACCTGTATCATGACCGGACAAGTAGCTTGAACCGGGGAGATCGTGCTGATAGGGGTAGGTACGAGATGAGTGGCGATGGAGCTCAGCTGCCCTTATTGAGAGACAAGTACATGGGTGTTTCAGATGAACCCATTAGGGTCCAGGGTAAAAATGGTGTTTTGAAGGTGATGGTGAAGAAGAAAAACAATGTGCCTGGGCCACTAGGGAACTATAGTTTTCCAAAATCTGAAGAACATAGAAAAGCTCCAAGAAGTGAGGATATTTCCAAGAAGAATGCTATCATCCCTCCACTTTTTGCAGAACCAAAGCTTCCTGAGAAACCAGTTTCAGCTGTTAGGACAGAGAAAAACCATGTGAATTTGCGAAAATCATTGCCCACTAAGAACAGCAAGAGCTCTGACTGGGATTCGGAGGACAGTGATACCTCATTGAAGCTAGCAGCAAAGAGTGCCGAAGCCTCTAAACCTATGAAGAGGGCAGGTTGCAAAGTTGAAGATGGTCCTTCATCTGAAAAGACCCCTCCAGCCAGAAATAAAGAAGTCAAACTTAAACGTGGTAGTGGCACAGAGAAGCAGAAACTGCGTGAACGGATAAGGGAGATGCTCCTGAATGCAGGCTGGACCATAGATTATAGGCCTAGAAGGAACAGAGACTACCTGGATGCTGTGTACATTAACCCATCAGGTACAGCTTACTGGTCTATCATTAAGGCTTATGACGCACTTCAAAAGCAAATAAATGAGGAAAATGAGGCTAAACGTAATGGGGATGGTTCTTCACTTGCACCTATAACTGATGACGTACTCAGTCAGTTAACCAGGAAAACTCGAAAGAAGATGGAGAAAGAAATGAAAAGGAAGCAAAGAGCTGACAGTGACAGTGAGAATGCAAAAGGAGTCCGTGTGAAAAAAACTAAAAGTGCCAAGCATGATCCAGAGAGCATGGACAGTGTTAGTTATGAGGAGAAACTAAGCTCCTACTTGAAGCAAGGTGGTAAGTCATTCAAGGGTAGAATGTATGAAAACGGTTTGGATTCAAATGGTCAGAGTTCCTCTCATCATTTACATGGCACTGTTGAAAAACCATCTTCTGGATCTAGTTCTCATATGCCACATGGAAGGAAAAGTAGAAAGCTTGGTAGATGTACTTTGTTGGTTCGTAGTTCTAAAAAGGGGCCTAACTCAGAAAGTGATGGCTATGTTCCATATACTGGAAAACGAACATTGCTCTCCTGGCTGATTGATACTGGAACTGTGCAATTGAGCCAAAAGGTGCAGTATATGAATCGGCGAAGAACTAAAGTAATGCTGGAGGGCTGGATTACAAGAGATGGCATTCACTGTGGTTGCTGTAGTAAGATCCTCACAGTCTCGAAATTTGAGATTCATGCAGGGAGCAAATTGCGCCAGCCATTTCAAAATATATGCTTGGACTCTGGGGTTTCCCTTCTGCAATGTCAGATAGATGCATGGAATAGACAAGAGGATATTGAACGCATTGGTTTCCACTCTGTACAAGTTGACGGTGACGATCCCGATGATGATACTTGTGGCCTCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGCTGTCCTTCAACATTTCATCAGAGCTGCTTGAACATACAGAAGCTTCCTCCAGGTGATTGGCACTGCCCAAATTGTATTTGCAAAGTTTGTGGAATAGCTAGTGAGGTTGTTGCTGAAGAGGATGATGCAACTGTTTCTGCACTACTGGCTTGTAGTCTCTGTGGGAAGAAATGTCACATATCATGCAGTCAGGAGATGGATGCTAGTCCTGCTGATTCCAATAGTTCAGGCTCTTCCTTTTGTGGGCAGAGATGTAGAGAGCTCTTTGAGAATTTGCAGAGATGTCTCGGGATCAAACATGAACTAGAAGCAGGATATACGTGGTCACTTGTAAAGAGAACAGATGTAGATAGAGGATTTCCTCTGAGGGTTGAATGCAATTCTAAGCTGGCTGTTGCATTGACTGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGACGGAGTGGGATCAATTTAATCCATAATGTTCTATATAATTGTGGATCAAACTTCAATCGGCTGAACTACAGTGGCTTCTATGCTGCTATTTTGGAGAAAGGTGATGAAATAATATCTGCCGCTTCTATCAGGTTTCATGGTACAATGTTAGCAGAGATGCCATTCATCGGAACTCGTCACATATACAGGCGACAAGGGATGTGTCGTAGGCTTTTCTGCGCCATTGAATCGGCTCTCTGCACCCTGAAGGTTGAGAAGTTGGTTATCCCTGCAATTGCGGAACTCATGCATACATGGACAGGTGTTTTTGGTTTTGTTCCTCTTGAGGAATCATTCAAGCAAGAAGTGAGGTCAATCAATATGTTAGTCTTCCCTGGTATAGACATGCTACAGAAGCTGCTGGTGGACAAAGAAAATGAGACAAACATGACAGGTGTAAAGAAAATGGACGGCATAGGCAAGGATTGTATAAAGCCTGGAGGAGGAGGCAAATCTGATATTGGTTCCCCAGCTAGTCTTGATCATCATGGGAGTGATGGAGCTGGTATGCTTCATATCAATGAAACTGTAGATGAAGCTGCTGATGTGGACTCTGGTTCTCGATGTCTAGGTGTCTCCTTAAATGATACTCCTGTAATGAGTGGCTCTTTGGATGCCTCTGATGAACTCAAAAATTTAGATTCAACTGGAAGGAGTATGTCTTCCGAGTCTCCTGCCGGTGACCAATTAGCTGGATCTACTTCTGACGGGAAATGCCTTCCTAATACAAGCCATGAAGTTCTCGAGATAGGAACTAAACCACTGCTGGAGTCTCCTGTTGAGGATAATATGCAGTGTAATTCCAAGTGTCCTGTTGTTTCTTCAAATAATATTTCCATGTTGAATGGTGGTTCATTAGATGCTTCTCATGAACAAAACAATCAGATTTCGATCAATGGGACTCTGTCTGCTGACTCTGATTCAGGTGCTAAGTTAGCTGAATATGGTTCTGAAGCAAAATTCCCATCTCCCCCTGAAAGAAGCAGTGAAGCTGTAGACACTGCACCTGTTGAAGATAATGTCTTGTCTACCTCGCAGTGTCCTGCTGCCTCATTAAATAATACTTCCATGATAAGGAGTAATCTAATGGAAGCTTCTCAGGTTCCCGCTAAGGGGACTGCATCTTCCGACTCCAATTCAGTTGCCAAGGTAGATGAATACACTTCTGAAGCAAAATGCCAGTCTCCCTCTAAAACAATTGATGAAGCTCTAGAGATTGGAAATGAAACAATACTGCATTCTCCAGTAGAAGGTAATATGCAGTCCACCTCTCAAGGTCCTGGTGCTCCATTAAATAATACTTCCATGTTGACTAGTAGCTCATCAGATGCTGCTTCTCATGAACTTAAGGTTTTGGATTCAACCAAGGGGAATCCATCTTTTGACTGTGATTCAGGTGCCGAGTTAACTGAACACACTTCTGAAGTGAAACGCAAGTCTTCCCCTGTTACAAGACATGAAGTTCTAGAGACGGAAAATCAACCAGTGGCAGATTCTCCCATTGAAGATAATATCCAGTCTACCTCTCAGAGTCCTGATGCTTCGTTAAAGGATACTTCCATGTTGAGTAGTGGTTCACTGAATGCTTTCCATGAACTCAACATTCAGCCTTCAACCAAGGGGACTCCATCCAACTCTGATCAAGGCGCCAAGTTAGCTGAGTACACGTTGGATGCAAAATGTCAGTCTTCTCCGGATACAAGTGGTGATCAAATGATGGGAGTAAAACCATTCCTGGATAATTCTTCAAGGTGCTTGAAAGAAAGTGCTTCTGATAATTCCCATGAAGAGAATGTTGATAGGGCCTCCCTTGAGCCTGTTCCTTTTTCAGGAGAAACTTTTGCTGGGAACAGTGAGGAAGATGGAAATCCAAATTCGAGTTTCTGTGAGACTGAGAAACAATCATACGTGGCTCCAGAAGTTGCTTCTGATGCAGTGCATTGTGAAAAGAGCATCCCTAAAGCATCTAGTGATGGCTCCGCTACTGATTCTGGGAGGGATGAATCTGGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1555

Amino Acids

169.04

Weight (kDa)

6.15

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 374 - 437 7.3e-15 Domain of unknown function (DUF7028)
TDBD PF16135 631 - 681 2.6e-21 Tify domain binding domain
PHD PF00628 709 - 748 4.6e-07 PHD-finger
IDM1_C PF23209 864 - 1002 5.1e-58 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1046
AccB1I GGYRCC 2 cut(s) 4046, 4295
AccB7I CCANNNNNTGG 2 cut(s) 1667, 1787
AccBSI CCGCTC 1 cut(s) 282
AccI GTMKAC 4 cut(s) 553, 3645, 3677, 4169
AccIII TCCGGA 1 cut(s) 4342
AciI CCGC 8 cut(s) 282, 322, 436, 494, 2730, 2888, 3756, 4629
AcsI RAATTY 9 cut(s) 55, 473, 533, 934, 1952, 2440, 3283, 3608, 4522
AcuI CTGAAG 7 cut(s) 15, 825, 2304, 2876, 3621, 3837, 4092
AcyI GRCGYC 1 cut(s) 4296
AflII CTTAAG 1 cut(s) 3995
AflIII ACRYGT 1 cut(s) 4314
AhlI ACTAGT 1 cut(s) 3962
Alw21I GWGCWC 4 cut(s) 661, 974, 2433, 3937
AlwNI CAGNNNCTG 3 cut(s) 1156, 3007, 3980
Ama87I CYCGRG 2 cut(s) 2456, 3392
Aor13HI TCCGGA 1 cut(s) 4342
AoxI GGCC 7 cut(s) 25, 227, 773, 1211, 1751, 2128, 4452
ApeKI GCWGC 8 cut(s) 664, 1016, 2193, 2693, 3007, 3188, 3695, 3980
ApoI RAATTY 9 cut(s) 55, 473, 533, 934, 1952, 2440, 3283, 3608, 4522
ArsI GACNNNNNNTTYG 4 cut(s) 3815, 3847, 4319, 4351
Asp700I GAANNNNTTC 2 cut(s) 134, 4235
AspLEI GCGC 3 cut(s) 1983, 2831, 4298
AspS9I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3926, 4452
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 9 cut(s) 55, 184, 754, 760, 2114, 2234, 2723, 3341, 4367
AsuII TTCGAA 1 cut(s) 138
AsuNHI GCTAGC 1 cut(s) 1012
AvaI CYCGRG 2 cut(s) 2456, 3392
AvaII GGWCC 4 cut(s) 715, 1076, 1197, 3926
BaeI ACNNNNGTAYC 2 cut(s) 3228, 3261
BamHI GGATCC 1 cut(s) 497
BanI GGYRCC 2 cut(s) 4046, 4295
BanII GRGCYC 3 cut(s) 661, 974, 2433
BbsI GAAGAC 4 cut(s) 2971, 3303, 4080, 4329
Bbv12I GWGCWC 4 cut(s) 661, 974, 2433, 3937
BbvI GCAGC 8 cut(s) 651, 1028, 2180, 2680, 2994, 3175, 3682, 3967
BceAI ACGGC 1 cut(s) 3076
BcgI CGANNNNNNTGC 2 cut(s) 3305, 3339
BciVI GTATCC 2 cut(s) 4195, 4339
BclI TGATCA 3 cut(s) 3130, 4288, 4357
BcnI CCSGG 1 cut(s) 611
BcuI ACTAGT 1 cut(s) 3962
BfmI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
BfoI RGCGCY 1 cut(s) 4299
BfrI CTTAAG 1 cut(s) 3995
BfuAI ACCTGC 1 cut(s) 1046
BfuI GTATCC 2 cut(s) 4195, 4339
BglII AGATCT 1 cut(s) 17
BisI GCNGC 9 cut(s) 665, 1017, 2194, 2694, 2730, 3008, 3189, 3696, 3981
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 9 cut(s) 666, 1018, 2195, 2695, 2731, 3009, 3190, 3697, 3982
Bme18I GGWCC 4 cut(s) 715, 1076, 1197, 3926
BmeT110I CYCGRG 2 cut(s) 2456, 3392
BmgT120I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3926, 4452
BmrI ACTGGG 2 cut(s) 317, 988
BmtI GCTAGC 1 cut(s) 1016
BmuI ACTGGG 2 cut(s) 317, 988
BpiI GAAGAC 4 cut(s) 2971, 3303, 4080, 4329
BplI GAGNNNNNCTC 2 cut(s) 1615, 1647
BpmI CTGGAG 7 cut(s) 1083, 1907, 2202, 3108, 3437, 3876, 4548
Bpu10I CCTNAGC 1 cut(s) 3759
Bpu1102I GCTNAGC 1 cut(s) 660
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 3 cut(s) 2954, 3906, 4481
BpuMI CCSGG 1 cut(s) 611
BsaAI YACGTR 2 cut(s) 2490, 4558
BsaBI GATNNNNATC 2 cut(s) 3539, 4515
BsaHI GRCGYC 1 cut(s) 4296
BsaJI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3795, 4014, 4266
BsaWI WCCGGW 2 cut(s) 591, 4342
BsaXI ACNNNNNCTCC 2 cut(s) 1464, 1494
Bse118I RCCGGY 1 cut(s) 3326
Bse3DI GCAATG 3 cut(s) 947, 1799, 2036
Bse8I GATNNNNATC 2 cut(s) 3539, 4515
BseAI TCCGGA 1 cut(s) 4342
BseDI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3795, 4014, 4266
BseJI GATNNNNATC 2 cut(s) 3539, 4515
BseMI GCAATG 3 cut(s) 947, 1799, 2036
BseMII CTCAG 9 cut(s) 674, 882, 1396, 1773, 2525, 3761, 4190, 4299, 4533
BseRI GAGGAG 5 cut(s) 229, 454, 1553, 3105, 3108
BseXI GCAGC 8 cut(s) 651, 1028, 2180, 2680, 2994, 3175, 3682, 3967
BseYI CCCAGC 2 cut(s) 3118, 4493
BsgI GTGCAG 4 cut(s) 1871, 2292, 2833, 3636
BshFI GGCC 7 cut(s) 27, 229, 775, 1213, 1753, 2130, 4454
BshNI GGYRCC 2 cut(s) 4046, 4295
BsiHKAI GWGCWC 4 cut(s) 661, 974, 2433, 3937
BsiHKCI CYCGRG 2 cut(s) 2456, 3392
BsiSI CCGG 5 cut(s) 230, 592, 610, 3327, 4343
BslFI GGGAC 4 cut(s) 438, 3562, 3778, 4285
BsmBI CGTCTC 1 cut(s) 4112
BsmFI GGGAC 4 cut(s) 438, 3562, 3778, 4285
BsmI GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237
BsnI GGCC 7 cut(s) 27, 229, 775, 1213, 1753, 2130, 4454
BsoBI CYCGRG 2 cut(s) 2456, 3392
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 4 cut(s) 661, 974, 2433, 3937
Bsp13I TCCGGA 1 cut(s) 4342
Bsp1407I TGTACA 2 cut(s) 1245, 2089
Bsp1720I GCTNAGC 1 cut(s) 660
BspACI CCGC 8 cut(s) 282, 322, 436, 494, 2730, 2888, 3756, 4629
BspANI GGCC 7 cut(s) 27, 229, 775, 1213, 1753, 2130, 4454
BspCNI CTCAG 9 cut(s) 673, 883, 1395, 1772, 2526, 3760, 4189, 4300, 4534
BspEI TCCGGA 1 cut(s) 4342
BspHI TCATGA 3 cut(s) 586, 3517, 3988
BspMI ACCTGC 1 cut(s) 1046
BspOI GCTAGC 1 cut(s) 1016
BspQI GCTCTTC 1 cut(s) 2407
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 4046, 4295
BspTI CTTAAG 1 cut(s) 3995
BsrBI CCGCTC 1 cut(s) 282
BsrDI GCAATG 3 cut(s) 947, 1799, 2036
BsrFI RCCGGY 1 cut(s) 3326
BsrGI TGTACA 2 cut(s) 1245, 2089
BssAI RCCGGY 1 cut(s) 3326
BssECI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3795, 4014, 4266
BssNI GRCGYC 1 cut(s) 4296
BssT1I CCWWGG 3 cut(s) 3795, 4014, 4266
Bst6I CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4431
BstACI GRCGYC 1 cut(s) 4296
BstAFI CTTAAG 1 cut(s) 3995
BstAPI GCANNNNNTGC 2 cut(s) 1025, 1156
BstAUI TGTACA 2 cut(s) 1245, 2089
BstBAI YACGTR 2 cut(s) 2490, 4558
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 1014, 1192, 1985, 2559
BstEII GGTNACC 1 cut(s) 3329
BstENI CCTNNNNNAGG 2 cut(s) 3090, 4476
BstH2I RGCGCY 1 cut(s) 4299
BstHHI GCGC 3 cut(s) 1983, 2831, 4298
BstNSI RCATGY 2 cut(s) 509, 2998
BstPI GGTNACC 1 cut(s) 3329
BstSFI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
BstV1I GCAGC 8 cut(s) 651, 1028, 2180, 2680, 2994, 3175, 3682, 3967
BstV2I GAAGAC 4 cut(s) 2971, 3303, 4080, 4329
BstX2I RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
BstXI CCANNNNNNTGG 2 cut(s) 2226, 3341
BstYI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
BsuI GTATCC 2 cut(s) 4195, 4339
BsuRI GGCC 7 cut(s) 27, 229, 775, 1213, 1753, 2130, 4454
BtgZI GCGATG 2 cut(s) 468, 666
BtsI GCAGTG 7 cut(s) 2230, 3410, 3449, 3640, 3648, 3692, 4590
BveI ACCTGC 1 cut(s) 1046
Cac8I GCNNGC 4 cut(s) 1014, 1192, 1985, 2559
CaiI CAGNNNCTG 3 cut(s) 1156, 3007, 3980
CciI TCATGA 3 cut(s) 586, 3517, 3988
CfoI GCGC 3 cut(s) 1983, 2831, 4298
Cfr10I RCCGGY 1 cut(s) 3326
Cfr13I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3926, 4452
CseI GACGC 1 cut(s) 1304
CspCI CAANNNNNGTGG 2 cut(s) 2239, 2274
DinI GGCGCC 1 cut(s) 4297
Eam1104I CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4431
EarI CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4431
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 3 cut(s) 659, 972, 2431
Eco130I CCWWGG 3 cut(s) 3795, 4014, 4266
Eco147I AGGCCT 1 cut(s) 1213
Eco24I GRGCYC 3 cut(s) 661, 974, 2433
Eco47I GGWCC 4 cut(s) 715, 1076, 1197, 3926
Eco53kI GAGCTC 3 cut(s) 659, 972, 2431
Eco57I CTGAAG 7 cut(s) 15, 825, 2304, 2876, 3621, 3837, 4092
Eco88I CYCGRG 2 cut(s) 2456, 3392
Eco91I GGTNACC 1 cut(s) 3329
EcoICRI GAGCTC 3 cut(s) 659, 972, 2431
EcoNI CCTNNNNNAGG 2 cut(s) 3090, 4476
EcoO109I RGGNCCY 3 cut(s) 1751, 3926, 4452
EcoO65I GGTNACC 1 cut(s) 3329
EcoRI GAATTC 1 cut(s) 55
EcoT14I CCWWGG 3 cut(s) 3795, 4014, 4266
EcoT22I ATGCAT 3 cut(s) 507, 2047, 2901
EcoT38I GRGCYC 3 cut(s) 661, 974, 2433
EgeI GGCGCC 1 cut(s) 4297
EheI GGCGCC 1 cut(s) 4297
ErhI CCWWGG 3 cut(s) 3795, 4014, 4266
Esp3I CGTCTC 1 cut(s) 4112
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 4 cut(s) 438, 3562, 3778, 4285
FauI CCCGC 2 cut(s) 487, 3763
FauNDI CATATG 1 cut(s) 1683
FbaI TGATCA 3 cut(s) 3130, 4288, 4357
FblI GTMKAC 4 cut(s) 553, 3645, 3677, 4169
Fnu4HI GCNGC 9 cut(s) 665, 1017, 2194, 2694, 2730, 3008, 3189, 3696, 3981
FriOI GRGCYC 3 cut(s) 661, 974, 2433
Fsp4HI GCNGC 9 cut(s) 665, 1017, 2194, 2694, 2730, 3008, 3189, 3696, 3981
GlaI GCGC 3 cut(s) 1982, 2830, 4297
GluI GCNGC 9 cut(s) 665, 1017, 2194, 2694, 2730, 3008, 3189, 3696, 3981
GsaI CCCAGC 2 cut(s) 3122, 4497
GsuI CTGGAG 7 cut(s) 1083, 1907, 2202, 3108, 3437, 3876, 4548
HaeII RGCGCY 1 cut(s) 4299
HaeIII GGCC 7 cut(s) 27, 229, 775, 1213, 1753, 2130, 4454
HapII CCGG 5 cut(s) 230, 592, 610, 3327, 4343
HgaI GACGC 1 cut(s) 1304
HhaI GCGC 3 cut(s) 1983, 2831, 4298
Hin1I GRCGYC 1 cut(s) 4296
Hin6I GCGC 3 cut(s) 1981, 2829, 4296
HinP1I GCGC 3 cut(s) 1981, 2829, 4296
HincII GTYRAC 6 cut(s) 565, 1392, 2098, 2605, 3960, 4056
HindII GTYRAC 6 cut(s) 565, 1392, 2098, 2605, 3960, 4056
HindIII AAGCTT 4 cut(s) 884, 1709, 2210, 3741
HpaI GTTAAC 2 cut(s) 1392, 4056
HpaII CCGG 5 cut(s) 230, 592, 610, 3327, 4343
HphI GGTGA 9 cut(s) 55, 184, 754, 760, 2114, 2234, 2723, 3341, 4367
HpyCH4IV ACGT 6 cut(s) 1129, 1336, 1377, 2489, 4316, 4557
HpySE526I ACGT 6 cut(s) 1129, 1336, 1377, 2489, 4316, 4557
Hsp92I GRCGYC 1 cut(s) 4296
HspAI GCGC 3 cut(s) 1981, 2829, 4296
KasI GGCGCC 1 cut(s) 4295
Kpn2I TCCGGA 1 cut(s) 4342
Ksp22I TGATCA 3 cut(s) 3130, 4288, 4357
KspAI GTTAAC 2 cut(s) 1392, 4056
LguI GCTCTTC 1 cut(s) 2407
Lsp1109I GCAGC 8 cut(s) 651, 1028, 2180, 2680, 2994, 3175, 3682, 3967
MaeII ACGT 6 cut(s) 1129, 1336, 1377, 2489, 4316, 4557
MaeIII GTNAC 7 cut(s) 1451, 2102, 2342, 2493, 2786, 3329, 4096
MbiI CCGCTC 1 cut(s) 282
MfeI CAATTG 3 cut(s) 1835, 2883, 3846
MflI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
MhlI GDGCHC 4 cut(s) 661, 974, 2433, 3937
Mly113I GGCGCC 1 cut(s) 4296
MmeI TCCRAC 3 cut(s) 3801, 4299, 4305
Mph1103I ATGCAT 3 cut(s) 507, 2047, 2901
MroI TCCGGA 1 cut(s) 4342
MroXI GAANNNNTTC 2 cut(s) 134, 4235
MslI CAYNNNNRTG 3 cut(s) 1641, 3141, 3168
MspA1I CMGCKG 2 cut(s) 664, 908
MspCI CTTAAG 1 cut(s) 3995
MspI CCGG 5 cut(s) 230, 592, 610, 3327, 4343
MunI CAATTG 3 cut(s) 1835, 2883, 3846
Mva1269I GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237
NarI GGCGCC 1 cut(s) 4296
NciI CCSGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 1683
NheI GCTAGC 1 cut(s) 1012
NmeAIII GCCGAG 2 cut(s) 237, 4075
NmuCI GTSAC 6 cut(s) 1451, 2102, 2342, 2493, 2786, 3329
NsiI ATGCAT 3 cut(s) 507, 2047, 2901
NspI RCATGY 2 cut(s) 509, 2998
NspV TTCGAA 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 3392
PagI TCATGA 3 cut(s) 586, 3517, 3988
PceI AGGCCT 1 cut(s) 1213
PciSI GCTCTTC 1 cut(s) 2407
PctI GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237
PdmI GAANNNNTTC 2 cut(s) 134, 4235
PflFI GACNNNGTC 1 cut(s) 3553
PflMI CCANNNNNTGG 2 cut(s) 1667, 1787
PfoI TCCNGGA 1 cut(s) 4383
PkrI GCNGC 9 cut(s) 666, 1018, 2195, 2695, 2731, 3009, 3190, 3697, 3982
PluTI GGCGCC 1 cut(s) 4299
Ppu21I YACGTR 2 cut(s) 2490, 4558
PpuMI RGGWCCY 1 cut(s) 3926
Psp124BI GAGCTC 3 cut(s) 661, 974, 2433
Psp5II RGGWCCY 1 cut(s) 3926
PspEI GGTNACC 1 cut(s) 3329
PspFI CCCAGC 2 cut(s) 3118, 4493
PspPI GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3926, 4452
PspPPI RGGWCCY 1 cut(s) 3926
PsrI GAACNNNNNNTAC 2 cut(s) 1214, 1246
PstNI CAGNNNCTG 3 cut(s) 1156, 3007, 3980
PsuI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
PsyI GACNNNGTC 1 cut(s) 3553
PvuII CAGCTG 2 cut(s) 664, 908
RseI CAYNNNNRTG 3 cut(s) 1641, 3141, 3168
SacI GAGCTC 3 cut(s) 661, 974, 2433
SapI GCTCTTC 1 cut(s) 2407
SatI GCNGC 9 cut(s) 665, 1017, 2194, 2694, 2730, 3008, 3189, 3696, 3981
Sau96I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3926, 4452
SduI GDGCHC 4 cut(s) 661, 974, 2433, 3937
SfcI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
SfoI GGCGCC 1 cut(s) 4297
Sfr274I CTCGAG 1 cut(s) 3392
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 4 cut(s) 715, 1076, 1197, 3926
SlaI CTCGAG 1 cut(s) 3392
SmiMI CAYNNNNRTG 3 cut(s) 1641, 3141, 3168
SmlI CTYRAG 5 cut(s) 2933, 3392, 3921, 3995, 4460
SmoI CTYRAG 5 cut(s) 2933, 3392, 3921, 3995, 4460
SpeI ACTAGT 1 cut(s) 3962
SseBI AGGCCT 1 cut(s) 1213
SsiI CCGC 8 cut(s) 282, 322, 436, 494, 2730, 2888, 3756, 4629
SspDI GGCGCC 1 cut(s) 4295
SspI AATATT 1 cut(s) 3481
SstI GAGCTC 3 cut(s) 661, 974, 2433
StuI AGGCCT 1 cut(s) 1213
StyI CCWWGG 3 cut(s) 3795, 4014, 4266
TaiI ACGT 6 cut(s) 1132, 1339, 1380, 2492, 4319, 4560
TatI WGTACW 5 cut(s) 684, 1245, 1721, 2089, 4311
TauI GCSGC 1 cut(s) 2732
TseFI GTSAC 6 cut(s) 1451, 2102, 2342, 2493, 2786, 3329
TseI GCWGC 8 cut(s) 664, 1016, 2193, 2693, 3007, 3188, 3695, 3980
Tsp45I GTSAC 6 cut(s) 1451, 2102, 2342, 2493, 2786, 3329
TspGWI ACGGA 4 cut(s) 1180, 1466, 2626, 4136
Tth111I GACNNNGTC 1 cut(s) 3553
Van91I CCANNNNNTGG 2 cut(s) 1667, 1787
Vha464I CTTAAG 1 cut(s) 3995
VpaK11BI GGWCC 4 cut(s) 715, 1076, 1197, 3926
XagI CCTNNNNNAGG 2 cut(s) 3090, 4476
XapI RAATTY 9 cut(s) 55, 473, 533, 934, 1952, 2440, 3283, 3608, 4522
XbaI TCTAGA 2 cut(s) 3859, 4114
XceI RCATGY 2 cut(s) 509, 2998
XcmI CCANNNNNNNNNTGG 1 cut(s) 725
XhoI CTCGAG 1 cut(s) 3392
XmiI GTMKAC 4 cut(s) 553, 3645, 3677, 4169
XmnI GAANNNNTTC 2 cut(s) 134, 4235
Zsp2I ATGCAT 3 cut(s) 507, 2047, 2901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.