TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G05380 AT1G05380 AT1G05380 AT4G14920 AT4G14920 AT4G14920 |
| fragaria_vesca | FvH4_4g15500 FvH4_4g15500 |
| malus_domestica | MD13G1192700.v1.1 MD16G1193400.v1.1 |
| prunus_persica | Prupe.1G013200_v2.0.a1 Prupe.1G013200_v2.0.a1 |
| pyrus_communis | pycom13g16500 pycom16g16310 |
| rosa_chinensis | RchiOBHm_Chr4g0416261 |
| rosa_laevigata | RLG00000008000 |
| rosa_multiflora | Rmu_sc0001145.1_g000013 |
| rosa_roxburghii | Rroxscaffold_5G00360120 |
| rosa_rugosa | Rorug04G0140500 |
| rosa_samantha | Rh4AG202400 Rh4BG199900 Rh4CG213300 Rh4DG199700 |
| rosa_wichuraiana | Rw4G017140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1046 |
| AccB1I | GGYRCC | 3 cut(s) | 4046, 4295, 4401 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1787 |
| AccBSI | CCGCTC | 1 cut(s) | 282 |
| AccI | GTMKAC | 4 cut(s) | 553, 3645, 3677, 4169 |
| AccIII | TCCGGA | 1 cut(s) | 4342 |
| AciI | CCGC | 8 cut(s) | 282, 322, 436, 494, 664, 2730, 3410, 3756 |
| AclI | AACGTT | 1 cut(s) | 4443 |
| AclWI | GGATC | 9 cut(s) | 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352 |
| AcsI | RAATTY | 8 cut(s) | 55, 533, 934, 1952, 2440, 3283, 3608, 4522 |
| AcuI | CTGAAG | 6 cut(s) | 825, 2304, 2876, 3621, 3837, 4092 |
| AflII | CTTAAG | 1 cut(s) | 3995 |
| AflIII | ACRYGT | 1 cut(s) | 4314 |
| AhlI | ACTAGT | 1 cut(s) | 3962 |
| Alw21I | GWGCWC | 4 cut(s) | 661, 974, 2433, 3937 |
| AlwI | GGATC | 9 cut(s) | 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1156, 3007, 3980 |
| Ama87I | CYCGRG | 2 cut(s) | 2456, 3392 |
| Aor13HI | TCCGGA | 1 cut(s) | 4342 |
| AoxI | GGCC | 9 cut(s) | 25, 227, 665, 773, 1211, 1751, 2128, 3925, 4452 |
| ApeKI | GCWGC | 7 cut(s) | 1016, 2693, 3007, 3188, 3412, 3695, 3980 |
| ApoI | RAATTY | 8 cut(s) | 55, 533, 934, 1952, 2440, 3283, 3608, 4522 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 3815, 3847, 4319, 4351 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 134, 4235 |
| AspLEI | GCGC | 1 cut(s) | 1983 |
| AsuC2I | CCSGG | 1 cut(s) | 611 |
| AsuHPI | GGTGA | 8 cut(s) | 55, 184, 754, 760, 2114, 2234, 2723, 3341 |
| AsuII | TTCGAA | 1 cut(s) | 138 |
| AsuNHI | GCTAGC | 1 cut(s) | 1012 |
| AvaI | CYCGRG | 2 cut(s) | 2456, 3392 |
| AvaII | GGWCC | 3 cut(s) | 715, 1076, 1197 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3228, 3261 |
| BamHI | GGATCC | 1 cut(s) | 497 |
| BanI | GGYRCC | 3 cut(s) | 4046, 4295, 4401 |
| BanII | GRGCYC | 4 cut(s) | 661, 974, 2433, 4467 |
| BbsI | GAAGAC | 4 cut(s) | 1656, 2971, 4080, 4329 |
| Bbv12I | GWGCWC | 4 cut(s) | 661, 974, 2433, 3937 |
| BbvI | GCAGC | 7 cut(s) | 1028, 2680, 2994, 3175, 3399, 3682, 3967 |
| BceAI | ACGGC | 1 cut(s) | 3076 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3305, 3339 |
| BciVI | GTATCC | 2 cut(s) | 4195, 4339 |
| BclI | TGATCA | 3 cut(s) | 3130, 4288, 4357 |
| BcnI | CCSGG | 1 cut(s) | 611 |
| BcuI | ACTAGT | 1 cut(s) | 3962 |
| BfmI | CTRYAG | 6 cut(s) | 787, 1927, 2677, 2999, 3177, 3642 |
| BfrI | CTTAAG | 1 cut(s) | 3995 |
| BfuAI | ACCTGC | 1 cut(s) | 1046 |
| BfuI | GTATCC | 2 cut(s) | 4195, 4339 |
| BglII | AGATCT | 1 cut(s) | 17 |
| BisI | GCNGC | 9 cut(s) | 665, 1017, 2694, 2730, 3008, 3189, 3413, 3696, 3981 |
| BlpI | GCTNAGC | 1 cut(s) | 660 |
| BlsI | GCNGC | 9 cut(s) | 666, 1018, 2695, 2731, 3009, 3190, 3414, 3697, 3982 |
| Bme18I | GGWCC | 3 cut(s) | 715, 1076, 1197 |
| BmeT110I | CYCGRG | 2 cut(s) | 2456, 3392 |
| BmrI | ACTGGG | 1 cut(s) | 988 |
| BmtI | GCTAGC | 1 cut(s) | 1016 |
| BmuI | ACTGGG | 1 cut(s) | 988 |
| BpiI | GAAGAC | 4 cut(s) | 1656, 2971, 4080, 4329 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1615, 1647 |
| BpmI | CTGGAG | 7 cut(s) | 329, 1083, 1907, 2202, 3108, 3437, 4548 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3759 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 660 |
| Bpu14I | TTCGAA | 1 cut(s) | 138 |
| BpuEI | CTTGAG | 3 cut(s) | 2954, 3906, 4481 |
| BpuMI | CCSGG | 1 cut(s) | 611 |
| BsaAI | YACGTR | 2 cut(s) | 2490, 4558 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3539, 4515 |
| BsaJI | CCNNGG | 8 cut(s) | 212, 610, 718, 770, 1477, 2983, 3928, 4014 |
| BsaWI | WCCGGW | 2 cut(s) | 591, 4342 |
| Bse118I | RCCGGY | 1 cut(s) | 3326 |
| Bse3DI | GCAATG | 3 cut(s) | 947, 1799, 2036 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3539, 4515 |
| BseAI | TCCGGA | 1 cut(s) | 4342 |
| BseDI | CCNNGG | 8 cut(s) | 212, 610, 718, 770, 1477, 2983, 3928, 4014 |
| BseJI | GATNNNNATC | 2 cut(s) | 3539, 4515 |
| BseMI | GCAATG | 3 cut(s) | 947, 1799, 2036 |
| BseMII | CTCAG | 7 cut(s) | 674, 882, 1396, 2525, 4190, 4299, 4533 |
| BseRI | GAGGAG | 5 cut(s) | 229, 454, 1553, 3105, 3108 |
| BseXI | GCAGC | 7 cut(s) | 1028, 2680, 2994, 3175, 3399, 3682, 3967 |
| BseYI | CCCAGC | 2 cut(s) | 3118, 4493 |
| BsgI | GTGCAG | 3 cut(s) | 1871, 2292, 3636 |
| BshFI | GGCC | 9 cut(s) | 27, 229, 667, 775, 1213, 1753, 2130, 3927, 4454 |
| BshNI | GGYRCC | 3 cut(s) | 4046, 4295, 4401 |
| BsiHKAI | GWGCWC | 4 cut(s) | 661, 974, 2433, 3937 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2456, 3392 |
| BsiSI | CCGG | 5 cut(s) | 230, 592, 610, 3327, 4343 |
| BslFI | GGGAC | 4 cut(s) | 438, 3562, 3778, 4285 |
| BsmBI | CGTCTC | 1 cut(s) | 4112 |
| BsmFI | GGGAC | 4 cut(s) | 438, 3562, 3778, 4285 |
| BsmI | GAATGC | 9 cut(s) | 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237, 4327 |
| BsnI | GGCC | 9 cut(s) | 27, 229, 667, 775, 1213, 1753, 2130, 3927, 4454 |
| BsoBI | CYCGRG | 2 cut(s) | 2456, 3392 |
| Bsp119I | TTCGAA | 1 cut(s) | 138 |
| Bsp1286I | GDGCHC | 5 cut(s) | 661, 974, 2433, 3937, 4467 |
| Bsp13I | TCCGGA | 1 cut(s) | 4342 |
| Bsp1407I | TGTACA | 3 cut(s) | 1245, 1639, 2089 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 660 |
| BspACI | CCGC | 8 cut(s) | 282, 322, 436, 494, 664, 2730, 3410, 3756 |
| BspANI | GGCC | 9 cut(s) | 27, 229, 667, 775, 1213, 1753, 2130, 3927, 4454 |
| BspCNI | CTCAG | 7 cut(s) | 673, 883, 1395, 2526, 4189, 4300, 4534 |
| BspEI | TCCGGA | 1 cut(s) | 4342 |
| BspHI | TCATGA | 3 cut(s) | 586, 3517, 3988 |
| BspMI | ACCTGC | 1 cut(s) | 1046 |
| BspOI | GCTAGC | 1 cut(s) | 1016 |
| BspPI | GGATC | 9 cut(s) | 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352 |
| BspQI | GCTCTTC | 1 cut(s) | 2407 |
| BspT104I | TTCGAA | 1 cut(s) | 138 |
| BspT107I | GGYRCC | 3 cut(s) | 4046, 4295, 4401 |
| BspTI | CTTAAG | 1 cut(s) | 3995 |
| BsrBI | CCGCTC | 1 cut(s) | 282 |
| BsrDI | GCAATG | 3 cut(s) | 947, 1799, 2036 |
| BsrFI | RCCGGY | 1 cut(s) | 3326 |
| BsrGI | TGTACA | 3 cut(s) | 1245, 1639, 2089 |
| BssAI | RCCGGY | 1 cut(s) | 3326 |
| BssECI | CCNNGG | 8 cut(s) | 212, 610, 718, 770, 1477, 2983, 3928, 4014 |
| BssT1I | CCWWGG | 1 cut(s) | 4014 |
| Bst6I | CTCTTC | 6 cut(s) | 152, 290, 1043, 2280, 2407, 4431 |
| BstAFI | CTTAAG | 1 cut(s) | 3995 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1025, 1156 |
| BstAUI | TGTACA | 3 cut(s) | 1245, 1639, 2089 |
| BstBAI | YACGTR | 2 cut(s) | 2490, 4558 |
| BstBI | TTCGAA | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 4 cut(s) | 1014, 1192, 1985, 2559 |
| BstDSI | CCRYGG | 1 cut(s) | 1477 |
| BstEII | GGTNACC | 1 cut(s) | 3329 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 3090, 3897, 4476 |
| BstHHI | GCGC | 1 cut(s) | 1983 |
| BstNSI | RCATGY | 2 cut(s) | 509, 2998 |
| BstPI | GGTNACC | 1 cut(s) | 3329 |
| BstSFI | CTRYAG | 6 cut(s) | 787, 1927, 2677, 2999, 3177, 3642 |
| BstV1I | GCAGC | 7 cut(s) | 1028, 2680, 2994, 3175, 3399, 3682, 3967 |
| BstV2I | GAAGAC | 4 cut(s) | 1656, 2971, 4080, 4329 |
| BstX2I | RGATCY | 5 cut(s) | 17, 497, 1670, 1935, 3344 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2226, 3341 |
| BstYI | RGATCY | 5 cut(s) | 17, 497, 1670, 1935, 3344 |
| BsuI | GTATCC | 2 cut(s) | 4195, 4339 |
| BsuRI | GGCC | 9 cut(s) | 27, 229, 667, 775, 1213, 1753, 2130, 3927, 4454 |
| BtgI | CCRYGG | 1 cut(s) | 1477 |
| BtgZI | GCGATG | 2 cut(s) | 468, 666 |
| BtsI | GCAGTG | 6 cut(s) | 2230, 3449, 3640, 3648, 3692, 4590 |
| BveI | ACCTGC | 1 cut(s) | 1046 |
| Cac8I | GCNNGC | 4 cut(s) | 1014, 1192, 1985, 2559 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1156, 3007, 3980 |
| CciI | TCATGA | 3 cut(s) | 586, 3517, 3988 |
| CfoI | GCGC | 1 cut(s) | 1983 |
| Cfr10I | RCCGGY | 1 cut(s) | 3326 |
| CseI | GACGC | 1 cut(s) | 1304 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2239, 2274 |
| Eam1104I | CTCTTC | 6 cut(s) | 152, 290, 1043, 2280, 2407, 4431 |
| EarI | CTCTTC | 6 cut(s) | 152, 290, 1043, 2280, 2407, 4431 |
| EciI | GGCGGA | 1 cut(s) | 337 |
| Ecl136II | GAGCTC | 3 cut(s) | 659, 972, 2431 |
| Eco130I | CCWWGG | 1 cut(s) | 4014 |
| Eco147I | AGGCCT | 1 cut(s) | 1213 |
| Eco24I | GRGCYC | 4 cut(s) | 661, 974, 2433, 4467 |
| Eco47I | GGWCC | 3 cut(s) | 715, 1076, 1197 |
| Eco53kI | GAGCTC | 3 cut(s) | 659, 972, 2431 |
| Eco57I | CTGAAG | 6 cut(s) | 825, 2304, 2876, 3621, 3837, 4092 |
| Eco88I | CYCGRG | 2 cut(s) | 2456, 3392 |
| Eco91I | GGTNACC | 1 cut(s) | 3329 |
| EcoICRI | GAGCTC | 3 cut(s) | 659, 972, 2431 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 3090, 3897, 4476 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1751, 3926, 4452 |
| EcoO65I | GGTNACC | 1 cut(s) | 3329 |
| EcoRI | GAATTC | 1 cut(s) | 55 |
| EcoT14I | CCWWGG | 1 cut(s) | 4014 |
| EcoT22I | ATGCAT | 3 cut(s) | 507, 2047, 2901 |
| EcoT38I | GRGCYC | 4 cut(s) | 661, 974, 2433, 4467 |
| ErhI | CCWWGG | 1 cut(s) | 4014 |
| Esp3I | CGTCTC | 1 cut(s) | 4112 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1107, 1139 |
| FaqI | GGGAC | 4 cut(s) | 438, 3562, 3778, 4285 |
| FauI | CCCGC | 2 cut(s) | 487, 3763 |
| FauNDI | CATATG | 1 cut(s) | 1683 |
| FbaI | TGATCA | 3 cut(s) | 3130, 4288, 4357 |
| FblI | GTMKAC | 4 cut(s) | 553, 3645, 3677, 4169 |
| Fnu4HI | GCNGC | 9 cut(s) | 665, 1017, 2694, 2730, 3008, 3189, 3413, 3696, 3981 |
| FriOI | GRGCYC | 4 cut(s) | 661, 974, 2433, 4467 |
| Fsp4HI | GCNGC | 9 cut(s) | 665, 1017, 2694, 2730, 3008, 3189, 3413, 3696, 3981 |
| GlaI | GCGC | 1 cut(s) | 1982 |
| GluI | GCNGC | 9 cut(s) | 665, 1017, 2694, 2730, 3008, 3189, 3413, 3696, 3981 |
| GsaI | CCCAGC | 2 cut(s) | 3122, 4497 |
| GsuI | CTGGAG | 7 cut(s) | 329, 1083, 1907, 2202, 3108, 3437, 4548 |
| HaeIII | GGCC | 9 cut(s) | 27, 229, 667, 775, 1213, 1753, 2130, 3927, 4454 |
| HapII | CCGG | 5 cut(s) | 230, 592, 610, 3327, 4343 |
| HgaI | GACGC | 1 cut(s) | 1304 |
| HhaI | GCGC | 1 cut(s) | 1983 |
| Hin6I | GCGC | 1 cut(s) | 1981 |
| HinP1I | GCGC | 1 cut(s) | 1981 |
| HincII | GTYRAC | 6 cut(s) | 565, 1392, 2098, 2605, 3960, 4056 |
| HindII | GTYRAC | 6 cut(s) | 565, 1392, 2098, 2605, 3960, 4056 |
| HindIII | AAGCTT | 4 cut(s) | 884, 1709, 2210, 3741 |
| HpaI | GTTAAC | 2 cut(s) | 1392, 4056 |
| HpaII | CCGG | 5 cut(s) | 230, 592, 610, 3327, 4343 |
| HphI | GGTGA | 8 cut(s) | 55, 184, 754, 760, 2114, 2234, 2723, 3341 |
| HpyCH4IV | ACGT | 6 cut(s) | 1129, 1336, 2489, 4316, 4443, 4557 |
| HpySE526I | ACGT | 6 cut(s) | 1129, 1336, 2489, 4316, 4443, 4557 |
| HspAI | GCGC | 1 cut(s) | 1981 |
| Kpn2I | TCCGGA | 1 cut(s) | 4342 |
| Ksp22I | TGATCA | 3 cut(s) | 3130, 4288, 4357 |
| KspAI | GTTAAC | 2 cut(s) | 1392, 4056 |
| LguI | GCTCTTC | 1 cut(s) | 2407 |
| Lsp1109I | GCAGC | 7 cut(s) | 1028, 2680, 2994, 3175, 3399, 3682, 3967 |
| MaeII | ACGT | 6 cut(s) | 1129, 1336, 2489, 4316, 4443, 4557 |
| MaeIII | GTNAC | 8 cut(s) | 1451, 2102, 2342, 2493, 2786, 3329, 3400, 4096 |
| MbiI | CCGCTC | 1 cut(s) | 282 |
| MfeI | CAATTG | 3 cut(s) | 1835, 2598, 3846 |
| MflI | RGATCY | 5 cut(s) | 17, 497, 1670, 1935, 3344 |
| MhlI | GDGCHC | 5 cut(s) | 661, 974, 2433, 3937, 4467 |
| MmeI | TCCRAC | 3 cut(s) | 3780, 3801, 4305 |
| Mph1103I | ATGCAT | 3 cut(s) | 507, 2047, 2901 |
| MroI | TCCGGA | 1 cut(s) | 4342 |
| MroXI | GAANNNNTTC | 2 cut(s) | 134, 4235 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1641, 3068, 3141, 3168 |
| MspA1I | CMGCKG | 3 cut(s) | 664, 908, 3412 |
| MspCI | CTTAAG | 1 cut(s) | 3995 |
| MspI | CCGG | 5 cut(s) | 230, 592, 610, 3327, 4343 |
| MunI | CAATTG | 3 cut(s) | 1835, 2598, 3846 |
| Mva1269I | GAATGC | 9 cut(s) | 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237, 4327 |
| NciI | CCSGG | 1 cut(s) | 611 |
| NdeI | CATATG | 1 cut(s) | 1683 |
| NheI | GCTAGC | 1 cut(s) | 1012 |
| NmeAIII | GCCGAG | 2 cut(s) | 237, 4075 |
| NmuCI | GTSAC | 6 cut(s) | 1451, 2102, 2342, 2493, 2786, 3329 |
| NsiI | ATGCAT | 3 cut(s) | 507, 2047, 2901 |
| NspI | RCATGY | 2 cut(s) | 509, 2998 |
| NspV | TTCGAA | 1 cut(s) | 138 |
| PaeR7I | CTCGAG | 1 cut(s) | 3392 |
| PagI | TCATGA | 3 cut(s) | 586, 3517, 3988 |
| PceI | AGGCCT | 1 cut(s) | 1213 |
| PciSI | GCTCTTC | 1 cut(s) | 2407 |
| PctI | GAATGC | 9 cut(s) | 856, 1192, 1468, 1911, 2549, 2591, 3886, 4237, 4327 |
| PdmI | GAANNNNTTC | 2 cut(s) | 134, 4235 |
| PflFI | GACNNNGTC | 1 cut(s) | 3553 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1787 |
| PfoI | TCCNGGA | 1 cut(s) | 4383 |
| PkrI | GCNGC | 9 cut(s) | 666, 1018, 2695, 2731, 3009, 3190, 3414, 3697, 3982 |
| Ppu21I | YACGTR | 2 cut(s) | 2490, 4558 |
| Psp124BI | GAGCTC | 3 cut(s) | 661, 974, 2433 |
| Psp1406I | AACGTT | 1 cut(s) | 4443 |
| PspEI | GGTNACC | 1 cut(s) | 3329 |
| PspFI | CCCAGC | 2 cut(s) | 3118, 4493 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1214, 1246 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1156, 3007, 3980 |
| PsuI | RGATCY | 5 cut(s) | 17, 497, 1670, 1935, 3344 |
| PsyI | GACNNNGTC | 1 cut(s) | 3553 |
| PvuII | CAGCTG | 1 cut(s) | 908 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1641, 3068, 3141, 3168 |
| SacI | GAGCTC | 3 cut(s) | 661, 974, 2433 |
| SapI | GCTCTTC | 1 cut(s) | 2407 |
| SatI | GCNGC | 9 cut(s) | 665, 1017, 2694, 2730, 3008, 3189, 3413, 3696, 3981 |
| SduI | GDGCHC | 5 cut(s) | 661, 974, 2433, 3937, 4467 |
| SfcI | CTRYAG | 6 cut(s) | 787, 1927, 2677, 2999, 3177, 3642 |
| Sfr274I | CTCGAG | 1 cut(s) | 3392 |
| SfuI | TTCGAA | 1 cut(s) | 138 |
| SinI | GGWCC | 3 cut(s) | 715, 1076, 1197 |
| SlaI | CTCGAG | 1 cut(s) | 3392 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1641, 3068, 3141, 3168 |
| SmlI | CTYRAG | 5 cut(s) | 2933, 3392, 3921, 3995, 4460 |
| SmoI | CTYRAG | 5 cut(s) | 2933, 3392, 3921, 3995, 4460 |
| SpeI | ACTAGT | 1 cut(s) | 3962 |
| SseBI | AGGCCT | 1 cut(s) | 1213 |
| SsiI | CCGC | 8 cut(s) | 282, 322, 436, 494, 664, 2730, 3410, 3756 |
| SspI | AATATT | 1 cut(s) | 3481 |
| SstI | GAGCTC | 3 cut(s) | 661, 974, 2433 |
| StuI | AGGCCT | 1 cut(s) | 1213 |
| StyI | CCWWGG | 1 cut(s) | 4014 |
| TaiI | ACGT | 6 cut(s) | 1132, 1339, 2492, 4319, 4446, 4560 |
| TatI | WGTACW | 7 cut(s) | 684, 1245, 1378, 1639, 1721, 2089, 4311 |
| TauI | GCSGC | 2 cut(s) | 667, 2732 |
| TseFI | GTSAC | 6 cut(s) | 1451, 2102, 2342, 2493, 2786, 3329 |
| TseI | GCWGC | 7 cut(s) | 1016, 2693, 3007, 3188, 3412, 3695, 3980 |
| Tsp45I | GTSAC | 6 cut(s) | 1451, 2102, 2342, 2493, 2786, 3329 |
| TspGWI | ACGGA | 4 cut(s) | 1180, 1466, 2626, 4136 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3553 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1787 |
| Vha464I | CTTAAG | 1 cut(s) | 3995 |
| VpaK11BI | GGWCC | 3 cut(s) | 715, 1076, 1197 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 3090, 3897, 4476 |
| XapI | RAATTY | 8 cut(s) | 55, 533, 934, 1952, 2440, 3283, 3608, 4522 |
| XbaI | TCTAGA | 2 cut(s) | 3859, 4114 |
| XceI | RCATGY | 2 cut(s) | 509, 2998 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 725 |
| XhoI | CTCGAG | 1 cut(s) | 3392 |
| XmiI | GTMKAC | 4 cut(s) | 553, 3645, 3677, 4169 |
| XmnI | GAANNNNTTC | 2 cut(s) | 134, 4235 |
| Zsp2I | ATGCAT | 3 cut(s) | 507, 2047, 2901 |