MD13G1192700.v1.1

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0007814
Physical Location & Seq
Forward (+)
16617061 .. 16625403
8343 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1192700.v1.1.491

Sequence Viewer

Length: 3852 bp
ATGGACGAAGGTGTGAGATCTGTTGGCCCTTCTGGGGTTTTGGTGAAGAAAAATTCTTCTGGTTGTTTAATTGTGAGGAAGAAACCCGAGGGGTTGAGTGGTGCTGTTGGTTCTTCGAGTGCTCGGAAGGTTTTTGAACCCAAGGACAAGAAGAGGTCGAGGTTGGTCTTGAGCGATTCGGGGTCTAGTGATGAGATACCTCCTCGTAGAAAGGTGGAACCTGAAACTATACGGGTTTCCAATGGTTTAAGAGCTGTAGATAAGGGCATTGCTGAAGATAGTGAATTTAGTCAAAAGCGGGAGAGATTTGATCCGGTTAGGCATAGCGAGGATGGCATGATTGGTAAAAGTTATTTGGATGAGAGTGGTGGAAAGAGAAGTAAGTTGGAGGTGTATGAATTTGATGAGTATGATGCAGAGATTTCGAGAAGGAAACGGTTTAATGATGGGGTAGGTGAGTTTGGGGGGAGAAGGTTTTCAGGAGCGATTCCTGTGCCACTAAGTGGCATTAAGAGGGAATTTGAAAGTGGTTCAAGAAGACATGTAGTTGACAAGAGGAAGAATTTGTACTTTGACAGGACAACTAGCTTGAACCGAGATCATACTGACAGGGGTAGGTTTGAGATGAATAGGGATGGAGCTCAGCTACCCTTATTGAGAGACAAGTTCACAGGTCAATCAGAGGAATCCATTAGGCTACAGGGTAAAAATGGTGTTTTGAAGGTCATGGTGAAGAAGAAAAAGAATGCAGGTGGGCCGCTGGAGAACTATAATTTTCGCAAATCTGAAGAAAATAGAAGGGCTCTGAGTGACAATATTGCAAAAAGTGCTATTATCCCTCCATTTTACTCTGAACCAAAGCTTCTTGAGAAATCAGTTTCAGTGGTTAGGACAGTGAAAAACCATCCGAATGTGCGAAAATCATTGCCTTCTTTGAACAGTAAGGGCTCCGACTGGGATTCAGAGGATAGTGATACATCATTGAAACTAGGACCAAAGAGTGTGGAAGCCTCTAAACCTGTGAAGAGGGTGGTTTGCAAAGATGAAGGTGCTCCTTCATGTGAAAAGACTCCTCCATCCAGAATCAAAGAAGGTAAAGTTAAACGTGGTAGTGGCACGGAAAAGCAAAAACTACGTGAACGAATACGAGAGATGCTTCTGAGTGCAGGCTGGACAATAGATTATAGGCCTAGAAGGAACAGAGACTATCTAGATGCTGTGTACATTAACCCAGCAGGTACAGCTTACTGGTCCATCATTAAGGCTTATGATGCGCTTCAAAAGCAATTGAATGAGGAGGAAAATGAGGCTAAACCTAGTGGGGTTCAACCTATAACTGATGATGTACTCAGCCAATTAACAAGGAAAACTCGAAAGAAGATTGAGAAAGAAATGAAAAGGAAGCAAAGAGCTGATGCTGAGGGTGAAAATGCGAGAGGAGTCCGTATGAAAAGATCCGCAAGTATCAAGCGTGATCCAGAGAGCATGGATAGTGTTAGTTATGAGGAGAAACTAAGCACCTACTTGAAGCAGGGTGGTAAGTCGTTCAAGGGTAAAATGAGTGAAAATGGTTTGGCCAATGTGAACTCAAATCATCCACACGAAAGTATTGAAAAACCGTCTTCAGGATCAAGTTCGCATATGCCACATGAAAGGAAAAGTAGAAAGCTTGGAAGGTGTACTTTGTTGGTTCGTGGTTCTAATTATGGGGTCAACTCGGAAAGTGATGGCTTTGTTCCATATACTGGGAAACGGACGTTGCTTTCCTGGCTGATTGACTCAGGAACTGTTCAATTGAGCCAAAAGGTGCAGTATATGAATCGCCGAAGGACTAAAGTAATGCTGGAGGGGTGGATTACAAGAGATGGAATTCACTGCGGTTGCTGTAGTAAAATCCTCACAACTTCAAAATTTGAGATTCATGCAGGAAGCAAGTTGCGCCAGCCATTTCAAAATATATGTTTGGACTCTGGCGTTTCCCTTCTGCAGTGTCAATTAGATGCATGGAATCGACAAAAAGCTACTGAACGCATTGGCTTCCACTCCGTAGAAGTCGACGGTGACGATCCAGATGATGATACTTGTGGCATCTGTGGGGATGGCGGGGATTTGATCTGTTGCGATAGCTGTCCATCAACATTTCATCAGAGCTGCTTGAATATACGGATGCTTCCTCCAGGTGATTGGCACTGTCCAAATTGTACATGCAAATTTTGTGGGTTAGCAAATGAGAATGTTGTTGAAGAGGATGATACAACTGTTGATGCACTGCTCACTTGCAGCCTCTGTGGGAAAAAATGTCACATATCATGCTGTCAGGAGATGGATGGTAGTCCTGCTGATTCTCCTAGTTTAGACTCTTCATTCTGTGGGCAGAAATGCAGAGAGCTCTTTGAGAATTTGAAGAAGTATCTTGGGGTCAAACATGAACTAGAAGCAGGATTTTCATGGACACTTGTTCATAGAACTGATGAAGATGAAGGGTTCCCGCAGATGATCGAATGCAATTCTAAGCTTGCTGTTGCTTTGACTGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGCAGCATCAATTTAATTCATAATGTTCTTTATAATTGTGGATCAAACTTCAATCGGCTGAACTACAGTGGCTTCTACACTGCTATTTTAGAGAGAGGTGATGAAATAATTTCTGCTGCATCAATCAGGTTTCATGGTACAAAGTTAGCAGAGATGCCATACATAGGAACTCGCCACATATATAGGCGACAAGGGATGTGCCGTCGGCTTTTTTGTGCCATTGAATCGGCTCTATGCTCTCTCAAGGTTGAGAAATTGGTTATCCCTGCAATTGCTGAACTCATGCATACATGGACAGAAGTTTTTGGTTTTATTCCTGTTGAGGAATCATTCAAGCAAGAAATGAGGTCAATGAATATGCTAGTATTCCCTGGTATAGACATGCTACAGAAGTTGCTTGTGGATCAAGGAAATGAGGGGAACATGACAACAGACCCAGGCGTAAAGCAATTAGAATGCAAAGGCAAAGATTTAATAAAGCATGGGAACGGAAGCAAATCAGATAGTGGTTCACCTGCTAGTATTGATCCTCGTGGATCTGATGAAACCAGTTTGCCTCACATTAATGAAACATTTGATGAAGGTACTGCTATGGTTTCTGGTTCTCGATGTCTCGGTGTCTCCTTAAATGATACTCCTGTGATGAGTGGTTCTTTAGATGGTTCTGATGAACTTAAAAGTTTAGATTCCACTGAGAGGAGTGTATCTTCTGACTCTCTTTTTGGGGCCGAATTACCTGGATCTACTTTGGACAAGGAATGCCCTGTTAATACAACCCACGAGACAGCAACAGGAGATACGCCAGTGCTGGATTCTCCTGTTGACGATAAAACTCAGTCTACCTCTCAGTGCCCTGGTGAGGCTCCGGCACTAGAAGATGAGCCAGCGCTGGATTCTCCTGTCGAAGATAAAATGCAGTCTACCTCTCAGGGTCCTGGTGAGGCTCCAGCAATAGAAGACAAACCAGTGCTGGATGATTCCCATGAAGAGAATGCTGATGCTTCCTGTCTTCAGCCTATTCCTTCTTCAGGAGAAACTTTTGCCAAGAACCCTGCGGAGGAAGTTAATGGAAATCAAGATTCCAGTTTCGGTGGTGCTAATGAGAGTTCCTTGCCCAATAATTGTGATTTGAATATTCAACTTGATAGTGAGGTTAAAAACAAATCGTATGTGGCTTCAGAAGTCGCATCTGATGCAAGGCGGTGTGAAAAGAGCATTCCTCAAGCATATAGTGATGGTTCCAAGGCTGATTCGGGGAACTCTGAATCTGGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1284

Amino Acids

141.53

Weight (kDa)

6.16

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 367 - 429 4e-15 Domain of unknown function (DUF7028)
TDBD PF16135 617 - 666 1.1e-20 Tify domain binding domain
PHD PF00628 695 - 734 2.9e-07 PHD-finger
IDM1_C PF23209 850 - 988 8.2e-59 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2604
AarI CACCTGC 2 cut(s) 740, 3094
Acc36I ACCTGC 3 cut(s) 740, 1226, 3094
AccB7I CCANNNNNTGG 2 cut(s) 503, 1745
AccI GTMKAC 3 cut(s) 2055, 3410, 3491
AciI CCGC 8 cut(s) 298, 758, 1458, 1878, 2103, 2489, 3626, 3772
AcoI YGGCCR 1 cut(s) 1575
AcsI RAATTY 9 cut(s) 52, 284, 398, 518, 562, 1869, 1910, 2210, 2398
AcuI CTGAAG 6 cut(s) 294, 807, 1608, 3566, 3582, 3732
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 8 cut(s) 569, 1223, 1240, 1347, 1681, 2203, 2710, 3157
AfeI AGCGCT 1 cut(s) 3459
AfiI CCNNNNNNNGG 9 cut(s) 34, 503, 1625, 1745, 2735, 3267, 3430, 3599, 3628
AflIII ACRYGT 1 cut(s) 541
AjnI CCWGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
Alw21I GWGCWC 4 cut(s) 124, 643, 1054, 2391
Alw26I GTCTC 5 cut(s) 654, 1197, 3188, 3196, 3347
AlwNI CAGNNNCTG 2 cut(s) 1787, 2286
Ama87I CYCGRG 1 cut(s) 86
Aor51HI AGCGCT 1 cut(s) 3459
AoxI GGCC 5 cut(s) 25, 755, 1187, 1575, 3297
ApeKI GCWGC 4 cut(s) 2151, 2280, 2574, 2687
ApoI RAATTY 9 cut(s) 52, 284, 398, 518, 562, 1869, 1910, 2210, 2398
ArsI GACNNNNNNTTYG 2 cut(s) 3275, 3307
AseI ATTAAT 1 cut(s) 3135
Asp700I GAANNNNTTC 1 cut(s) 475
AspLEI GCGC 3 cut(s) 1276, 1941, 3460
AspS9I GGNCC 6 cut(s) 26, 755, 992, 1251, 3297, 3503
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 3 cut(s) 992, 1251, 3503
BaeGI GKGCMC 1 cut(s) 3425
BaeI ACNNNNGTAYC 6 cut(s) 2244, 2277, 3195, 3228, 3360, 3393
BalI TGGCCA 1 cut(s) 1577
BanII GRGCYC 4 cut(s) 643, 805, 950, 2391
BarI GAAGNNNNNNTAC 2 cut(s) 551, 583
BauI CACGAG 2 cut(s) 3102, 3350
BbsI GAAGAC 4 cut(s) 544, 1614, 3534, 3572
Bbv12I GWGCWC 4 cut(s) 124, 643, 1054, 2391
BbvCI CCTCAGC 1 cut(s) 1419
BbvI GCAGC 4 cut(s) 2138, 2292, 2586, 2674
BceAI ACGGC 1 cut(s) 2757
BcgI CGANNNNNNTGC 4 cut(s) 405, 439, 475, 509
BciT130I CCWGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
BcoDI GTCTC 5 cut(s) 654, 1197, 3188, 3196, 3347
BfmI CTRYAG 6 cut(s) 255, 698, 1885, 1985, 2635, 2957
BfoI RGCGCY 1 cut(s) 3461
BfuAI ACCTGC 3 cut(s) 740, 1226, 3094
BglII AGATCT 1 cut(s) 17
BisI GCNGC 5 cut(s) 758, 2152, 2281, 2575, 2688
BlpI GCTNAGC 1 cut(s) 642
BlsI GCNGC 5 cut(s) 759, 2153, 2282, 2576, 2689
Bme1390I CCNGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
Bme18I GGWCC 3 cut(s) 992, 1251, 3503
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 6 cut(s) 26, 755, 992, 1251, 3297, 3503
BmiI GGNNCC 8 cut(s) 219, 949, 2486, 3298, 3435, 3504, 3516, 3811
BmrFI CCNGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
BmrI ACTGGG 2 cut(s) 964, 1755
BmuI ACTGGG 2 cut(s) 964, 1755
BpiI GAAGAC 4 cut(s) 544, 1614, 3534, 3572
BplI GAGNNNNNCTC 2 cut(s) 3775, 3807
BpmI CTGGAG 4 cut(s) 782, 1865, 2160, 3501
Bpu10I CCTNAGC 1 cut(s) 1419
Bpu1102I GCTNAGC 1 cut(s) 642
BpuEI CTTGAG 4 cut(s) 190, 887, 2798, 3777
BsaAI YACGTR 1 cut(s) 1136
BsaJI CCNNGG 6 cut(s) 87, 141, 2941, 3007, 3424, 3813
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 9 cut(s) 34, 503, 1625, 1745, 2735, 3267, 3430, 3599, 3628
Bse1I ACTGG 7 cut(s) 959, 1253, 1750, 3120, 3374, 3536, 3654
Bse3DI GCAATG 2 cut(s) 267, 923
BseBI CCWGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
BseDI CCNNGG 6 cut(s) 87, 141, 2941, 3007, 3424, 3813
BseLI CCNNNNNNNGG 9 cut(s) 34, 503, 1625, 1745, 2735, 3267, 3430, 3599, 3628
BseMI GCAATG 2 cut(s) 267, 923
BseNI ACTGG 7 cut(s) 959, 1253, 1750, 3120, 3374, 3536, 3654
BseRI GAGGAG 7 cut(s) 192, 1062, 1310, 1452, 1520, 2584, 3283
BseSI GKGCMC 1 cut(s) 3425
BseXI GCAGC 4 cut(s) 2138, 2292, 2586, 2674
BseYI CCCAGC 1 cut(s) 1231
BsgI GTGCAG 2 cut(s) 1185, 1829
BshFI GGCC 5 cut(s) 27, 757, 1189, 1577, 3299
BsiHKAI GWGCWC 4 cut(s) 124, 643, 1054, 2391
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 2 cut(s) 314, 3437
BslI CCNNNNNNNGG 9 cut(s) 34, 503, 1625, 1745, 2735, 3267, 3430, 3599, 3628
BsmAI GTCTC 5 cut(s) 654, 1197, 3188, 3196, 3347
BsmI GAATGC 7 cut(s) 751, 2507, 2549, 3032, 3335, 3568, 3786
BsnI GGCC 5 cut(s) 27, 757, 1189, 1577, 3299
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 7 cut(s) 124, 643, 805, 950, 1054, 2391, 3425
Bsp1407I TGTACA 2 cut(s) 1221, 2201
Bsp1720I GCTNAGC 1 cut(s) 642
BspACI CCGC 8 cut(s) 298, 758, 1458, 1878, 2103, 2489, 3626, 3772
BspANI GGCC 5 cut(s) 27, 757, 1189, 1577, 3299
BspLI GGNNCC 8 cut(s) 219, 949, 2486, 3298, 3435, 3504, 3516, 3811
BspMAI CTGCAG 1 cut(s) 1989
BspMI ACCTGC 3 cut(s) 740, 1226, 3094
BsrDI GCAATG 2 cut(s) 267, 923
BsrGI TGTACA 2 cut(s) 1221, 2201
BsrI ACTGG 7 cut(s) 959, 1253, 1750, 3120, 3374, 3536, 3654
BssECI CCNNGG 6 cut(s) 87, 141, 2941, 3007, 3424, 3813
BssSI CACGAG 2 cut(s) 3102, 3350
BssT1I CCWWGG 2 cut(s) 141, 3813
Bst2BI CACGAG 2 cut(s) 3102, 3350
Bst2UI CCWGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
Bst6I CTCTTC 5 cut(s) 146, 1019, 2238, 2365, 3552
BstAPI GCANNNNNTGC 2 cut(s) 827, 3764
BstAUI TGTACA 2 cut(s) 1221, 2201
BstBAI YACGTR 1 cut(s) 1136
BstC8I GCNNGC 4 cut(s) 1168, 1943, 2517, 3456
BstENI CCTNNNNNAGG 1 cut(s) 3597
BstH2I RGCGCY 1 cut(s) 3461
BstHHI GCGC 3 cut(s) 1276, 1941, 3460
BstMAI GTCTC 5 cut(s) 654, 1197, 3188, 3196, 3347
BstMWI GCNNNNNNNGC 8 cut(s) 333, 827, 1241, 1271, 1282, 1768, 1938, 3764
BstNI CCWGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
BstNSI RCATGY 3 cut(s) 545, 2208, 2956
BstSCI CCNGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
BstSFI CTRYAG 6 cut(s) 255, 698, 1885, 1985, 2635, 2957
BstSLI GKGCMC 1 cut(s) 3425
BstV1I GCAGC 4 cut(s) 2138, 2292, 2586, 2674
BstV2I GAAGAC 4 cut(s) 544, 1614, 3534, 3572
BstX2I RGATCY 4 cut(s) 17, 1454, 3107, 3311
BstXI CCANNNNNNTGG 1 cut(s) 2184
BstYI RGATCY 4 cut(s) 17, 1454, 3107, 3311
BsuRI GGCC 5 cut(s) 27, 757, 1189, 1577, 3299
BtsI GCAGTG 4 cut(s) 1873, 1994, 2267, 2649
BveI ACCTGC 3 cut(s) 740, 1226, 3094
Cac8I GCNNGC 4 cut(s) 1168, 1943, 2517, 3456
CaiI CAGNNNCTG 2 cut(s) 1787, 2286
CfoI GCGC 3 cut(s) 1276, 1941, 3460
Cfr13I GGNCC 6 cut(s) 26, 755, 992, 1251, 3297, 3503
Csp6I GTAC 8 cut(s) 568, 1222, 1239, 1346, 1680, 2202, 2709, 3156
CspCI CAANNNNNGTGG 4 cut(s) 984, 1019, 2197, 2232
CviQI GTAC 8 cut(s) 568, 1222, 1239, 1346, 1680, 2202, 2709, 3156
DraIII CACNNNGTG 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 1575
Eam1104I CTCTTC 5 cut(s) 146, 1019, 2238, 2365, 3552
EarI CTCTTC 5 cut(s) 146, 1019, 2238, 2365, 3552
Ecl136II GAGCTC 2 cut(s) 641, 2389
Eco130I CCWWGG 2 cut(s) 141, 3813
Eco147I AGGCCT 1 cut(s) 1189
Eco24I GRGCYC 4 cut(s) 643, 805, 950, 2391
Eco47I GGWCC 3 cut(s) 992, 1251, 3503
Eco47III AGCGCT 1 cut(s) 3459
Eco53kI GAGCTC 2 cut(s) 641, 2389
Eco57I CTGAAG 6 cut(s) 294, 807, 1608, 3566, 3582, 3732
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 2 cut(s) 641, 2389
EcoNI CCTNNNNNAGG 1 cut(s) 3597
EcoO109I RGGNCCY 1 cut(s) 3503
EcoRI GAATTC 1 cut(s) 1869
EcoRII CCWGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
EcoT14I CCWWGG 2 cut(s) 141, 3813
EcoT22I ATGCAT 2 cut(s) 2005, 2859
EcoT38I GRGCYC 4 cut(s) 643, 805, 950, 2391
ErhI CCWWGG 2 cut(s) 141, 3813
FalI AAGNNNNNCTT 2 cut(s) 1666, 1698
FauI CCCGC 3 cut(s) 291, 2096, 2496
FauNDI CATATG 1 cut(s) 1641
FblI GTMKAC 3 cut(s) 2055, 3410, 3491
Fnu4HI GCNGC 5 cut(s) 758, 2152, 2281, 2575, 2688
FriOI GRGCYC 4 cut(s) 643, 805, 950, 2391
Fsp4HI GCNGC 5 cut(s) 758, 2152, 2281, 2575, 2688
GlaI GCGC 3 cut(s) 1275, 1940, 3459
GluI GCNGC 5 cut(s) 758, 2152, 2281, 2575, 2688
GsaI CCCAGC 1 cut(s) 1235
GsuI CTGGAG 4 cut(s) 782, 1865, 2160, 3501
HaeII RGCGCY 1 cut(s) 3461
HaeIII GGCC 5 cut(s) 27, 757, 1189, 1577, 3299
HapII CCGG 2 cut(s) 314, 3437
HhaI GCGC 3 cut(s) 1276, 1941, 3460
Hin6I GCGC 3 cut(s) 1274, 1939, 3458
HinP1I GCGC 3 cut(s) 1274, 1939, 3458
HincII GTYRAC 5 cut(s) 550, 1714, 2056, 2563, 3394
HindII GTYRAC 5 cut(s) 550, 1714, 2056, 2563, 3394
HindIII AAGCTT 3 cut(s) 860, 1667, 2513
HpaII CCGG 2 cut(s) 314, 3437
Hpy99I CGWCG 2 cut(s) 2060, 2778
HpyCH4IV ACGT 3 cut(s) 1105, 1135, 1757
HpyF10VI GCNNNNNNNGC 8 cut(s) 333, 827, 1241, 1271, 1282, 1768, 1938, 3764
HpySE526I ACGT 3 cut(s) 1105, 1135, 1757
HspAI GCGC 3 cut(s) 1274, 1939, 3458
LmnI GCTCC 7 cut(s) 482, 638, 953, 1057, 2571, 3439, 3520
Lsp1109I GCAGC 4 cut(s) 2138, 2292, 2586, 2674
MaeII ACGT 3 cut(s) 1105, 1135, 1757
MaeIII GTNAC 3 cut(s) 809, 2060, 2300
MfeI CAATTG 3 cut(s) 1286, 1793, 2841
MflI RGATCY 4 cut(s) 17, 1454, 3107, 3311
MhlI GDGCHC 7 cut(s) 124, 643, 805, 950, 1054, 2391, 3425
MlsI TGGCCA 1 cut(s) 1577
MluNI TGGCCA 1 cut(s) 1577
MlyI GAGTC 6 cut(s) 1063, 1449, 1772, 1961, 2351, 3278
MmeI TCCRAC 2 cut(s) 366, 975
Mox20I TGGCCA 1 cut(s) 1577
Mph1103I ATGCAT 2 cut(s) 2005, 2859
MroXI GAANNNNTTC 1 cut(s) 475
MscI TGGCCA 1 cut(s) 1577
MslI CAYNNNNRTG 2 cut(s) 909, 3135
Msp20I TGGCCA 1 cut(s) 1577
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 2 cut(s) 314, 3437
MspR9I CCNGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
MunI CAATTG 3 cut(s) 1286, 1793, 2841
Mva1269I GAATGC 7 cut(s) 751, 2507, 2549, 3032, 3335, 3568, 3786
MvaI CCWGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
MwoI GCNNNNNNNGC 8 cut(s) 333, 827, 1241, 1271, 1282, 1768, 1938, 3764
NdeI CATATG 1 cut(s) 1641
NlaIV GGNNCC 8 cut(s) 219, 949, 2486, 3298, 3435, 3504, 3516, 3811
NmuCI GTSAC 3 cut(s) 809, 2060, 2300
NsiI ATGCAT 2 cut(s) 2005, 2859
NspI RCATGY 3 cut(s) 545, 2208, 2956
PaqCI CACCTGC 2 cut(s) 740, 3094
PceI AGGCCT 1 cut(s) 1189
PciI ACATGT 1 cut(s) 541
PcsI WCGNNNNNNNCGW 1 cut(s) 2061
PctI GAATGC 7 cut(s) 751, 2507, 2549, 3032, 3335, 3568, 3786
PdmI GAANNNNTTC 1 cut(s) 475
PflMI CCANNNNNTGG 2 cut(s) 503, 1745
PkrI GCNGC 5 cut(s) 759, 2153, 2282, 2576, 2689
PleI GAGTC 6 cut(s) 1063, 1448, 1772, 1961, 2351, 3278
PpsI GAGTC 6 cut(s) 1063, 1448, 1772, 1961, 2351, 3278
Ppu21I YACGTR 1 cut(s) 1136
PpuMI RGGWCCY 1 cut(s) 3503
PscI ACATGT 1 cut(s) 541
PshBI ATTAAT 1 cut(s) 3135
PsiI TTATAA 1 cut(s) 2604
Psp124BI GAGCTC 2 cut(s) 643, 2391
Psp5II RGGWCCY 1 cut(s) 3503
Psp6I CCWGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
PspFI CCCAGC 1 cut(s) 1231
PspGI CCWGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
PspN4I GGNNCC 8 cut(s) 219, 949, 2486, 3298, 3435, 3504, 3516, 3811
PspPI GGNCC 6 cut(s) 26, 755, 992, 1251, 3297, 3503
PspPPI RGGWCCY 1 cut(s) 3503
PstI CTGCAG 1 cut(s) 1989
PstNI CAGNNNCTG 2 cut(s) 1787, 2286
PsuI RGATCY 4 cut(s) 17, 1454, 3107, 3311
RsaI GTAC 8 cut(s) 569, 1223, 1240, 1347, 1681, 2203, 2710, 3157
RsaNI GTAC 8 cut(s) 568, 1222, 1239, 1346, 1680, 2202, 2709, 3156
RseI CAYNNNNRTG 2 cut(s) 909, 3135
SacI GAGCTC 2 cut(s) 643, 2391
SalI GTCGAC 1 cut(s) 2054
SatI GCNGC 5 cut(s) 758, 2152, 2281, 2575, 2688
Sau96I GGNCC 6 cut(s) 26, 755, 992, 1251, 3297, 3503
SchI GAGTC 6 cut(s) 1063, 1449, 1772, 1961, 2351, 3278
ScrFI CCNGG 7 cut(s) 1768, 2178, 2943, 3009, 3309, 3426, 3507
SduI GDGCHC 7 cut(s) 124, 643, 805, 950, 1054, 2391, 3425
SfcI CTRYAG 6 cut(s) 255, 698, 1885, 1985, 2635, 2957
SinI GGWCC 3 cut(s) 992, 1251, 3503
SmiMI CAYNNNNRTG 2 cut(s) 909, 3135
SmlI CTYRAG 4 cut(s) 169, 866, 2813, 3792
SmoI CTYRAG 4 cut(s) 169, 866, 2813, 3792
SseBI AGGCCT 1 cut(s) 1189
SsiI CCGC 8 cut(s) 298, 758, 1458, 1878, 2103, 2489, 3626, 3772
SspI AATATT 2 cut(s) 817, 3706
SstI GAGCTC 2 cut(s) 643, 2391
StuI AGGCCT 1 cut(s) 1189
StyD4I CCNGG 7 cut(s) 1766, 2176, 2941, 3007, 3307, 3424, 3505
StyI CCWWGG 2 cut(s) 141, 3813
TaiI ACGT 3 cut(s) 1108, 1138, 1760
TaqI TCGA 9 cut(s) 116, 158, 425, 1372, 2011, 2055, 2499, 3178, 3474
TatI WGTACW 5 cut(s) 567, 1221, 1345, 1679, 2201
TauI GCSGC 1 cut(s) 760
TseFI GTSAC 3 cut(s) 809, 2060, 2300
TseI GCWGC 4 cut(s) 2151, 2280, 2574, 2687
Tsp45I GTSAC 3 cut(s) 809, 2060, 2300
TspGWI ACGGA 6 cut(s) 1133, 1433, 1768, 2035, 2179, 3075
Van91I CCANNNNNTGG 2 cut(s) 503, 1745
VpaK11BI GGWCC 3 cut(s) 992, 1251, 3503
VspI ATTAAT 1 cut(s) 3135
XagI CCTNNNNNAGG 1 cut(s) 3597
XapI RAATTY 9 cut(s) 52, 284, 398, 518, 562, 1869, 1910, 2210, 2398
XbaI TCTAGA 1 cut(s) 1210
XceI RCATGY 3 cut(s) 545, 2208, 2956
XmiI GTMKAC 3 cut(s) 2055, 3410, 3491
XmnI GAANNNNTTC 1 cut(s) 475
Zsp2I ATGCAT 2 cut(s) 2005, 2859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.