FvH4_4g15500

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007814
Physical Location & Seq
Forward (+)
19232987 .. 19241706
8720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15500.t2

Sequence Viewer

Length: 4584 bp
ATGGACGAAGGAGTGAGATCTGTAGGTCCGTCTGGGGTGTTGGTGAAGAATCGGAATTCCTCGGGGTGTTTGATTGTGAGGAAGAAGCCGGATGCGATCAGTGGCGGCGGCGGCGGTGGTGGAGGTGGTTCGGGTTCGAGGAAGGTTTTCGAATCGAAGAAGGAGAAGAAGAGGTCGAGGCTGGTGATGAGTGATTCGGGGTCGAGTGATGAGCTGTTGATGCCGCCGAGGAGGAAGGTGGGGCCGGAGACGGTTCGGGTTTGTAATGCATTGGAGAAGGGCATTGCGGAAGGGAGTGGGAAGAGGGATAGGGCGGAGAGTGTGCGGCGGAATGAGGAGGGTTTGATGGGGGGAAGGACTAATTTGGAGGTGTTTGAGTTTAATGAGTATGATGGGGTTGAGGGGCAGACGGTGAGGAGGAGCCGGTTCGGGGATGGGGTTATTGGAGTTGAGTTTGGGGAGAGGAGGTATGGGGGATCTGCCATGCAGGTGCCACGGAGTGGGATCAAGAGGGAGTTTGAGACTGGTTCGAGTAGGCATCTTGTTGACAAGAGGAAGAGCTTGTATCATGAGAGGACAGGGAGTTTGGGCCGGGGAGATAGGGGTATATATGGTGATGGAGGTCAGCTGCCGTTAGCGAGAGACAAGTTTGTGGGTGTTTCGGATGAACCTATTAGGGTTCAGGGTAAGAATGGTGTTTTGAAGGTGATGGTGAAGAAGAAGAACAATGTGCCTGGGCCACTAGGGACATATATTTTTCCAAAAGCTGAAGAGCATAGAAAAGCTCCGAGAAGTGAAGATATCCCTAAGAAGAATGCAATCATCCCTCCATTTTTTGCTGAACCAAAGCCTCTTGAGAAACCAGTTTTGGCTGCTAGGACAGAGAAAAGCCATATGAATTTGCGAAAATCATTGCCCATTAAGAGCAGCAAGAGCTCTGACTGGGATTCAGAAGACAGTGATACTTCTTTGAAGCTAGGAGCAAAGAGTGCCGAAGCCTCTAAACCTATGAAGAGGGCAGGTTTCAAAGTTGAAGATGGTCCTTCATCTGAAAAGAGCCCTCCAGCCAAAAATAAAGAAGTCAAACTTAAACGTGGTAGTGGCACAGAGAAGCAGAAACTGCGTGAACGTATAAGGGAGATGCTTCTGAATGCAGGCTGGACCATTGATTATAGGCCTAGAAGGAACAGAGACTACCTGGATGCTGTGTACATTAACCCATCAGGTACAGCTTACTGGTCCATCATTAAGGCTTATGACGCTCTTCAAAAGCAAACAAATGAAGAAAATGAGGCTAGACGTATTGGGGATGGTTCTTCACTTGCACCTATAACGGATGACGTACTCAGTCAGTTAACCAGGAAAACTCGAAAGAAGATGGAGAAAGAAATGAAAAGGAAGCAGCAAAGAGCTGACAGTGACAGTGATAATGCAAAAGGAGCCCGTATGAAAAAATCTAGAACGTCCAAGCATGATCCAGAGAGCATGGACAGTGTTAGTTATGAGGAAAAACTAAGCTCCTACCTGAAGCAAGGTGGTAAGTCATTCAAGGGTAGAATGTATGAAAATGGTTTCGATTCAAATGCTCAGAGTTCCTCTCAACATTTACCTGGCACTGTTGAAAAACCATCATCTGGATCTAGTTCTCATATGCCTCACGGAAGGAAAAGTAGAAAGCTTGGTAGATGTACTTTGTTGGTTCGTGGTTCTAACAAGGCGCTTAACTCGGAAAATGATGGCTTTGTTCCATATACTGGAAAACGAACATTGCTTTCCTGGCTGATTGATACAGGAACTGTGCAATTGAGCCAAAAGGTGCAGTATATGAATCGGAGAAGAACTAAAGTAATGCTGGAGGGTTGGATTACAAGAGATGGCATTCACTGTGGTTGCTGTAGTAAGATCCTCACAGTCTCGAAATTTGAGATTCATGCAGGGAGCAAATTGCGCCAGCCATTTCAAAATATATGCTTGGACTCTGGGGTTTCCCTTCTGCAATGTCAAATAGATGCATGGAATAGACAAGAGGATATTGACCGCATTGGTTTCCACTCTGTACAAGTAGACGGTGATGATCCCGATGATGATACCTGTGGCCTCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGCTGTCCTTCAACATTTCATCAGAGCTGCTTGAACATACAGATGCTTCCTCCAGGTGATTGGCACTGCCCAAATTGTGTTTGCAAAGTTTGTGGAATAGCTAGTGAGAATGTTGCTGAAGAGGATGAGACAACTGTTTCTGCACTACTGGCTTGTAGTCTCTGTGGAAAGAAATGTCACGTATCATGCAGTCAGGAGATGGATGCTGGTCCTGCTGATTCCAATAGTTTAGGCTCTTCCTTTTGTGGGCAGAAGTGTAGAGAGCTCTTTGAGAGTTTGCAGAGATGTCTTGGGGTCAAACATGAACTAGAAGCAGGATATACATGGTCTCTTGTTAAGAGAACAGATGTAGATAGAGGATTTCCTTTGAGGGTTGAATGCAATTCAAAGCTTGCTGTTGCGTTGACTGTTATGGACGAATGCTTTTTGCCTATTGTTGACAGAAGGAGTGGGATCAATTTAATTCATAATGTTCTATATAATTGTGGATCAAACTTCAATCGGCTGAACTACAGTGGCTTCTACGCTGCAATTTTGGAGAAAGGTGATGAAATAGTTTCTGCAGCTTCTCTCAGGTTTCATGGTACAAAGTTAGCAGAGATGCCATTCATTGGTACTCGCCACATATACAGGCGACAAGGGATGTGTCGGAGGCTTTTCAACGCCATTGAATCGGCTCTCTGCTCCCTGAAGGTTGAGAAGTTGGTTATCCCTGCAATTGCGGAACTCTTGCATACATGGACAGGTGTTTTTGGCTTTGTTCCTCTTGAGGAATCATTCAAGCAAGAAGTGAGGTCAATCAATATGTTAGTCTTCCCTGGTATAGACATGCTACAGAAGCTGCTGGTGGACAAAGAAAATGAGACGAGCATGACAGGTTTAAAGAAAATGGAAGGCATAGGCAAGGAATGTATAAAGCCTGGAGGCAGTGGTAAATCTGATACTGGTTCTCCAGCTAGCCTTGATCCTCACAGGAGTGATGGAGTCGGTTTGCTTCATATCGGTGAAACTGTAGATGAAGCTACTGATGTGGATTCTGGTTCTCAGTGTCTAGGTGTCTCCTTAAATGATACTCCTGTGATGAGTGGCTCTTTAGATGCTTCTGATGAACTCAAAAATTTAGAGTCAACTGGAAGGAGTATGTCTTCTGAGTCTCCTACCGGGGACCAATTAGCTGGATCTACTTCTGACAGGAAATGTGCTCCTAATACAAGCAATGAAGTTCTTGAGATAGGAACTAAACCACTGCTGGAGTCTCCGGTTGAAGATAATATGCAGTGTGATTCCAAGTGTCCTGTTGCTTCAAATGATACTTCCGTGTTGAATGGTGGTTCGTTAGATGCTTCTCATGAACATAACAATCAGATTTTGATCAAGGGGACTCTGTCCGCTGACTCTGATTCAGGTGCTAAGTTAGCTCAATATGGTTGTGAAGCAAATTCCCCTGACAGAAGCTCTGAAGCTGTAGAGACAGCACCAGTGGAAGATAATGTCTTGTTTACCTTGCAGTGTCCTGGTGCCTCATTAAATAATACTTCTCAGGTTCCAGCCAAGGGGACTCCATCTTCTGACTCCGATTTAGTTGCCAAGTTAGATGCTGAAGCAAAATGCCAGCCACCCTCTAATACAGTCGATGAAGCTCTAGAGATTGGAAATGAAACAATACTAGATTCTCCTGTTGAAGATAATATACAGTCCACCTCTCAGTGCCCTGGTGCTTCATTAAATAATACTTCCATGTTGACTAGTAGCTCATCAGATGCCGCTTTTCTTGAACTTAAGGTTTCGGATTCAACCAAGGGGAATCCATCTTTTGACTGTAGTTCAGGTGCCGAGATAACTGAACACACTTCTGAAGTGAAACACACTTCTTCCCCTGGTACAAGACATGAAGCTCTAGAGACAGAAAATCAACCTGTGGCAGATTCTCCCATAGTAGATAATATCCAGTCTACATCTGAGAGTCCTGATGCTTCGCTAAACAATATTTCCATGTTGAGTGGTGGTTCACTGAATGCTTTCCATGAGCTCAACGTTCAGCCTTCAACCGAGGGGACTCCATCTGACTCTGATCAAGGTTCCAAGTTAGTTGAGTGCACCTTGGATGCGAAATGTCAGTCTTCACCGGATACTAACGATGATAAAATGGTGGGAATAAAAACATTTCTGGATAATTCTTCGAAGTGCTTGAAAGAGAGTGCTTCAGATAATTCCCATGAAGAGAATGTTGACAGGGCCTCTGTTGAGCCCATTCCTTCAGGAGAAACGTTTGCGGGGAACAGGGAGGAAGTTAATGGAAATCCAAATTCCAGTTTCTGCGAGACTGAGAAACAATCGTTCATTGCTCCAGAAATTGCTTCTGATACAATGCACTGTGAAAAGAGCATCCCTAAAGCATCTAGTGATGGCTCTGTCACTGATTCTGGGAGGGATGAATCTGGTTCTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1528

Amino Acids

165.4

Weight (kDa)

5.83

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 361 - 425 4.7e-15 Domain of unknown function (DUF7028)
TDBD PF16135 620 - 670 2.6e-21 Tify domain binding domain
PHD PF00628 698 - 737 4.5e-07 PHD-finger
IDM1_C PF23209 853 - 991 5e-59 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 2 cut(s) 478, 1010
AccB1I GGYRCC 3 cut(s) 490, 3650, 3962
AccB7I CCANNNNNTGG 4 cut(s) 500, 1634, 1754, 2744
AccI GTMKAC 2 cut(s) 2064, 4085
AclI AACGTT 2 cut(s) 4167, 4400
AcsI RAATTY 6 cut(s) 55, 898, 1919, 3250, 3571, 4438
AcuI CTGAAG 9 cut(s) 789, 1547, 2271, 2843, 3612, 3753, 4008, 4320, 4374
AdeI CACNNNGTG 1 cut(s) 500
AfaI GTAC 8 cut(s) 1211, 1228, 1344, 1690, 2058, 2719, 2749, 4015
AfiI CCNNNNNNNGG 7 cut(s) 430, 500, 1634, 1754, 2379, 2744, 3686
AflII CTTAAG 1 cut(s) 3911
AhlI ACTAGT 1 cut(s) 3878
AjuI GAANNNNNNNTTGG 2 cut(s) 851, 883
AleI CACNNNNGTG 1 cut(s) 3108
Alw21I GWGCWC 5 cut(s) 938, 2400, 3337, 4164, 4232
Alw44I GTGCAC 1 cut(s) 4228
AlwNI CAGNNNCTG 4 cut(s) 1120, 1796, 2974, 4449
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 6 cut(s) 242, 589, 737, 1175, 2095, 4368
ApaLI GTGCAC 1 cut(s) 4228
ApeKI GCWGC 8 cut(s) 628, 872, 927, 1402, 2160, 2660, 2696, 2974
ApoI RAATTY 6 cut(s) 55, 898, 1919, 3250, 3571, 4438
ArsI GACNNNNNNTTYG 4 cut(s) 568, 600, 4235, 4267
Asp700I GAANNNNTTC 2 cut(s) 146, 4151
AspLEI GCGC 2 cut(s) 1720, 1950
AsuC2I CCSGG 2 cut(s) 593, 3295
AsuII TTCGAA 2 cut(s) 150, 4313
AsuNHI GCTAGC 1 cut(s) 3089
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 6 cut(s) 26, 1040, 1161, 1239, 2342, 3298
BaeGI GKGCMC 2 cut(s) 3845, 4232
BaeI ACNNNNGTAYC 4 cut(s) 3195, 3228, 3435, 3468
BanI GGYRCC 3 cut(s) 490, 3650, 3962
BanII GRGCYC 6 cut(s) 938, 1061, 1444, 2400, 4164, 4383
BarI GAAGNNNNNNTAC 2 cut(s) 3807, 3839
BbsI GAAGAC 4 cut(s) 960, 2938, 3270, 4245
Bbv12I GWGCWC 5 cut(s) 938, 2400, 3337, 4164, 4232
BbvI GCAGC 8 cut(s) 615, 859, 939, 1414, 2147, 2647, 2708, 2961
BceAI ACGGC 1 cut(s) 616
BcgI CGANNNNNNTGC 4 cut(s) 1565, 1599, 3698, 3732
BciVI GTATCC 1 cut(s) 4255
BclI TGATCA 2 cut(s) 3504, 4204
BcnI CCSGG 2 cut(s) 593, 3295
BcuI ACTAGT 1 cut(s) 3878
BfmI CTRYAG 8 cut(s) 21, 1894, 2644, 2694, 2966, 3144, 3597, 3952
BfoI RGCGCY 1 cut(s) 1721
BfrI CTTAAG 1 cut(s) 3911
BfuAI ACCTGC 2 cut(s) 478, 1010
BfuI GTATCC 1 cut(s) 4255
BglII AGATCT 1 cut(s) 17
Bme18I GGWCC 6 cut(s) 26, 1040, 1161, 1239, 2342, 3298
BmeT110I CYCGRG 1 cut(s) 61
BmiI GGNNCC 9 cut(s) 243, 422, 492, 1441, 3299, 3652, 3678, 3964, 4213
BmrI ACTGGG 1 cut(s) 952
BmtI GCTAGC 1 cut(s) 3093
BmuI ACTGGG 1 cut(s) 952
BpiI GAAGAC 4 cut(s) 960, 2938, 3270, 4245
BplI GAGNNNNNCTC 2 cut(s) 1582, 1614
BpmI CTGGAG 7 cut(s) 1047, 1874, 2169, 3069, 3075, 3404, 4464
Bpu14I TTCGAA 2 cut(s) 150, 4313
BpuEI CTTGAG 3 cut(s) 875, 2921, 3380
BpuMI CCSGG 2 cut(s) 593, 3295
BsaAI YACGTR 1 cut(s) 2314
BsaBI GATNNNNATC 1 cut(s) 3503
BsaI GGTCTC 1 cut(s) 2466
BsaWI WCCGGW 2 cut(s) 3391, 4258
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 3067, 3097
Bsc4I CCNNNNNNNGG 7 cut(s) 430, 500, 1634, 1754, 2379, 2744, 3686
Bse118I RCCGGY 1 cut(s) 423
Bse3DI GCAATG 6 cut(s) 282, 911, 1766, 2003, 3355, 4473
Bse8I GATNNNNATC 1 cut(s) 3503
BseJI GATNNNNATC 1 cut(s) 3503
BseLI CCNNNNNNNGG 7 cut(s) 430, 500, 1634, 1754, 2379, 2744, 3686
BseMI GCAATG 6 cut(s) 282, 911, 1766, 2003, 3355, 4473
BseMII CTCAG 9 cut(s) 1360, 1601, 2719, 3191, 3273, 3686, 3851, 4083, 4449
BseRI GAGGAG 5 cut(s) 244, 350, 430, 433, 478
BseSI GKGCMC 2 cut(s) 3845, 4232
BseXI GCAGC 8 cut(s) 615, 859, 939, 1414, 2147, 2647, 2708, 2961
BsgI GTGCAG 2 cut(s) 1838, 2259
BshFI GGCC 6 cut(s) 244, 591, 739, 1177, 2097, 4370
BshNI GGYRCC 3 cut(s) 490, 3650, 3962
BsiHKAI GWGCWC 5 cut(s) 938, 2400, 3337, 4164, 4232
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 7 cut(s) 89, 245, 424, 592, 3294, 3392, 4259
BslFI GGGAC 5 cut(s) 760, 3311, 3526, 3703, 4201
BslI CCNNNNNNNGG 7 cut(s) 430, 500, 1634, 1754, 2379, 2744, 3686
BsmBI CGTCTC 2 cut(s) 242, 2990
BsmFI GGGAC 5 cut(s) 760, 3311, 3526, 3703, 4201
BsmI GAATGC 6 cut(s) 820, 1156, 1878, 2516, 2558, 4153
BsnI GGCC 6 cut(s) 244, 591, 739, 1177, 2097, 4370
Bso31I GGTCTC 1 cut(s) 2466
BsoBI CYCGRG 1 cut(s) 61
Bsp119I TTCGAA 2 cut(s) 150, 4313
Bsp1286I GDGCHC 9 cut(s) 938, 1061, 1444, 2400, 3337, 3845, 4164, 4232, 4383
Bsp1407I TGTACA 2 cut(s) 1209, 2056
BspANI GGCC 6 cut(s) 244, 591, 739, 1177, 2097, 4370
BspCNI CTCAG 9 cut(s) 1359, 1600, 2718, 3190, 3274, 3685, 3850, 4084, 4450
BspHI TCATGA 2 cut(s) 568, 3481
BspLI GGNNCC 9 cut(s) 243, 422, 492, 1441, 3299, 3652, 3678, 3964, 4213
BspMAI CTGCAG 1 cut(s) 2698
BspMI ACCTGC 2 cut(s) 478, 1010
BspOI GCTAGC 1 cut(s) 3093
BspQI GCTCTTC 4 cut(s) 551, 765, 1269, 2374
BspT104I TTCGAA 2 cut(s) 150, 4313
BspT107I GGYRCC 3 cut(s) 490, 3650, 3962
BspTI CTTAAG 1 cut(s) 3911
BspTNI GGTCTC 1 cut(s) 2466
BsrDI GCAATG 6 cut(s) 282, 911, 1766, 2003, 3355, 4473
BsrFI RCCGGY 1 cut(s) 423
BsrGI TGTACA 2 cut(s) 1209, 2056
BssAI RCCGGY 1 cut(s) 423
BssT1I CCWWGG 3 cut(s) 3684, 3930, 4233
Bst6I CTCTTC 9 cut(s) 164, 296, 551, 765, 1007, 1269, 2247, 2374, 4347
BstAFI CTTAAG 1 cut(s) 3911
BstAPI GCANNNNNTGC 2 cut(s) 989, 1120
BstAUI TGTACA 2 cut(s) 1209, 2056
BstBAI YACGTR 1 cut(s) 2314
BstBI TTCGAA 2 cut(s) 150, 4313
BstC8I GCNNGC 5 cut(s) 1156, 1952, 2526, 3091, 3746
BstDSI CCRYGG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 1721
BstHHI GCGC 2 cut(s) 1720, 1950
BstNSI RCATGY 1 cut(s) 2965
BstSFI CTRYAG 8 cut(s) 21, 1894, 2644, 2694, 2966, 3144, 3597, 3952
BstSLI GKGCMC 2 cut(s) 3845, 4232
BstV1I GCAGC 8 cut(s) 615, 859, 939, 1414, 2147, 2647, 2708, 2961
BstV2I GAAGAC 4 cut(s) 960, 2938, 3270, 4245
BstX2I RGATCY 5 cut(s) 17, 476, 1637, 1902, 3311
BstXI CCANNNNNNTGG 2 cut(s) 2193, 3308
BstYI RGATCY 5 cut(s) 17, 476, 1637, 1902, 3311
BsuI GTATCC 1 cut(s) 4255
BsuRI GGCC 6 cut(s) 244, 591, 739, 1177, 2097, 4370
BtgI CCRYGG 1 cut(s) 494
BtsI GCAGTG 5 cut(s) 2197, 3067, 3377, 3416, 3647
BveI ACCTGC 2 cut(s) 478, 1010
Cac8I GCNNGC 5 cut(s) 1156, 1952, 2526, 3091, 3746
CaiI CAGNNNCTG 4 cut(s) 1120, 1796, 2974, 4449
CciI TCATGA 2 cut(s) 568, 3481
CfoI GCGC 2 cut(s) 1720, 1950
Cfr10I RCCGGY 1 cut(s) 423
CseI GACGC 1 cut(s) 1268
Csp6I GTAC 8 cut(s) 1210, 1227, 1343, 1689, 2057, 2718, 2748, 4014
CspCI CAANNNNNGTGG 2 cut(s) 2206, 2241
CviQI GTAC 8 cut(s) 1210, 1227, 1343, 1689, 2057, 2718, 2748, 4014
DraI TTTAAA 1 cut(s) 3015
DraIII CACNNNGTG 1 cut(s) 500
Eam1104I CTCTTC 9 cut(s) 164, 296, 551, 765, 1007, 1269, 2247, 2374, 4347
EarI CTCTTC 9 cut(s) 164, 296, 551, 765, 1007, 1269, 2247, 2374, 4347
EciI GGCGGA 2 cut(s) 329, 343
Ecl136II GAGCTC 3 cut(s) 936, 2398, 4162
Eco130I CCWWGG 3 cut(s) 3684, 3930, 4233
Eco147I AGGCCT 1 cut(s) 1177
Eco24I GRGCYC 6 cut(s) 938, 1061, 1444, 2400, 4164, 4383
Eco31I GGTCTC 1 cut(s) 2466
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 6 cut(s) 26, 1040, 1161, 1239, 2342, 3298
Eco53kI GAGCTC 3 cut(s) 936, 2398, 4162
Eco57I CTGAAG 9 cut(s) 789, 1547, 2271, 2843, 3612, 3753, 4008, 4320, 4374
Eco88I CYCGRG 1 cut(s) 61
EcoICRI GAGCTC 3 cut(s) 936, 2398, 4162
EcoO109I RGGNCCY 1 cut(s) 4368
EcoRI GAATTC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 3 cut(s) 3684, 3930, 4233
EcoT22I ATGCAT 2 cut(s) 271, 2014
EcoT38I GRGCYC 6 cut(s) 938, 1061, 1444, 2400, 4164, 4383
ErhI CCWWGG 3 cut(s) 3684, 3930, 4233
Esp3I CGTCTC 2 cut(s) 242, 2990
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 5 cut(s) 760, 3311, 3526, 3703, 4201
FauI CCCGC 1 cut(s) 4399
FauNDI CATATG 2 cut(s) 894, 1650
FbaI TGATCA 2 cut(s) 3504, 4204
FblI GTMKAC 2 cut(s) 2064, 4085
FriOI GRGCYC 6 cut(s) 938, 1061, 1444, 2400, 4164, 4383
GlaI GCGC 2 cut(s) 1719, 1949
GsuI CTGGAG 7 cut(s) 1047, 1874, 2169, 3069, 3075, 3404, 4464
HaeII RGCGCY 1 cut(s) 1721
HaeIII GGCC 6 cut(s) 244, 591, 739, 1177, 2097, 4370
HapII CCGG 7 cut(s) 89, 245, 424, 592, 3294, 3392, 4259
HgaI GACGC 1 cut(s) 1268
HhaI GCGC 2 cut(s) 1720, 1950
Hin6I GCGC 2 cut(s) 1718, 1948
HinP1I GCGC 2 cut(s) 1718, 1948
HincII GTYRAC 7 cut(s) 547, 1356, 2538, 2572, 3261, 3876, 4363
HindII GTYRAC 7 cut(s) 547, 1356, 2538, 2572, 3261, 3876, 4363
HindIII AAGCTT 2 cut(s) 1676, 2522
HpaI GTTAAC 1 cut(s) 1356
HpaII CCGG 7 cut(s) 89, 245, 424, 592, 3294, 3392, 4259
HpyCH4IV ACGT 8 cut(s) 1093, 1129, 1300, 1341, 1463, 2313, 4167, 4400
HpySE526I ACGT 8 cut(s) 1093, 1129, 1300, 1341, 1463, 2313, 4167, 4400
HspAI GCGC 2 cut(s) 1718, 1948
Ksp22I TGATCA 2 cut(s) 3504, 4204
KspAI GTTAAC 1 cut(s) 1356
LguI GCTCTTC 4 cut(s) 551, 765, 1269, 2374
LmnI GCTCC 9 cut(s) 420, 790, 980, 1439, 1523, 1938, 2822, 3340, 4483
Lsp1109I GCAGC 8 cut(s) 615, 859, 939, 1414, 2147, 2647, 2708, 2961
MaeII ACGT 8 cut(s) 1093, 1129, 1300, 1341, 1463, 2313, 4167, 4400
MaeIII GTNAC 3 cut(s) 1418, 2309, 4546
MfeI CAATTG 2 cut(s) 1802, 2850
MflI RGATCY 5 cut(s) 17, 476, 1637, 1902, 3311
MhlI GDGCHC 9 cut(s) 938, 1061, 1444, 2400, 3337, 3845, 4164, 4232, 4383
MmeI TCCRAC 2 cut(s) 1841, 2762
Mph1103I ATGCAT 2 cut(s) 271, 2014
MroXI GAANNNNTTC 2 cut(s) 146, 4151
MslI CAYNNNNRTG 4 cut(s) 488, 2174, 3108, 3135
MspA1I CMGCKG 2 cut(s) 628, 3524
MspCI CTTAAG 1 cut(s) 3911
MspI CCGG 7 cut(s) 89, 245, 424, 592, 3294, 3392, 4259
MunI CAATTG 2 cut(s) 1802, 2850
Mva1269I GAATGC 6 cut(s) 820, 1156, 1878, 2516, 2558, 4153
NciI CCSGG 2 cut(s) 593, 3295
NdeI CATATG 2 cut(s) 894, 1650
NheI GCTAGC 1 cut(s) 3089
NlaIV GGNNCC 9 cut(s) 243, 422, 492, 1441, 3299, 3652, 3678, 3964, 4213
NmeAIII GCCGAG 2 cut(s) 252, 3991
NmuCI GTSAC 3 cut(s) 1418, 2309, 4546
NsiI ATGCAT 2 cut(s) 271, 2014
NspI RCATGY 1 cut(s) 2965
NspV TTCGAA 2 cut(s) 150, 4313
OliI CACNNNNGTG 1 cut(s) 3108
PagI TCATGA 2 cut(s) 568, 3481
PaqCI CACCTGC 1 cut(s) 478
PceI AGGCCT 1 cut(s) 1177
PciSI GCTCTTC 4 cut(s) 551, 765, 1269, 2374
PctI GAATGC 6 cut(s) 820, 1156, 1878, 2516, 2558, 4153
PdmI GAANNNNTTC 2 cut(s) 146, 4151
PflFI GACNNNGTC 1 cut(s) 3517
PflMI CCANNNNNTGG 4 cut(s) 500, 1634, 1754, 2744
Ppu21I YACGTR 1 cut(s) 2314
Psp124BI GAGCTC 3 cut(s) 938, 2400, 4164
Psp1406I AACGTT 2 cut(s) 4167, 4400
PspN4I GGNNCC 9 cut(s) 243, 422, 492, 1441, 3299, 3652, 3678, 3964, 4213
PsrI GAACNNNNNNTAC 2 cut(s) 1178, 1210
PstI CTGCAG 1 cut(s) 2698
PstNI CAGNNNCTG 4 cut(s) 1120, 1796, 2974, 4449
PsuI RGATCY 5 cut(s) 17, 476, 1637, 1902, 3311
PsyI GACNNNGTC 1 cut(s) 3517
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 8 cut(s) 1211, 1228, 1344, 1690, 2058, 2719, 2749, 4015
RsaNI GTAC 8 cut(s) 1210, 1227, 1343, 1689, 2057, 2718, 2748, 4014
RseI CAYNNNNRTG 4 cut(s) 488, 2174, 3108, 3135
SacI GAGCTC 3 cut(s) 938, 2400, 4164
SapI GCTCTTC 4 cut(s) 551, 765, 1269, 2374
SduI GDGCHC 9 cut(s) 938, 1061, 1444, 2400, 3337, 3845, 4164, 4232, 4383
SfcI CTRYAG 8 cut(s) 21, 1894, 2644, 2694, 2966, 3144, 3597, 3952
SfuI TTCGAA 2 cut(s) 150, 4313
SinI GGWCC 6 cut(s) 26, 1040, 1161, 1239, 2342, 3298
SmiMI CAYNNNNRTG 4 cut(s) 488, 2174, 3108, 3135
SmlI CTYRAG 4 cut(s) 854, 2900, 3359, 3911
SmoI CTYRAG 4 cut(s) 854, 2900, 3359, 3911
SpeI ACTAGT 1 cut(s) 3878
SseBI AGGCCT 1 cut(s) 1177
SspI AATATT 1 cut(s) 4120
SstI GAGCTC 3 cut(s) 938, 2400, 4164
StuI AGGCCT 1 cut(s) 1177
StyI CCWWGG 3 cut(s) 3684, 3930, 4233
TaiI ACGT 8 cut(s) 1096, 1132, 1303, 1344, 1466, 2316, 4170, 4403
TatI WGTACW 3 cut(s) 1209, 1688, 2056
TauI GCSGC 6 cut(s) 108, 111, 114, 226, 328, 3899
TseFI GTSAC 3 cut(s) 1418, 2309, 4546
TseI GCWGC 8 cut(s) 628, 872, 927, 1402, 2160, 2660, 2696, 2974
Tsp45I GTSAC 3 cut(s) 1418, 2309, 4546
TspGWI ACGGA 5 cut(s) 18, 511, 1349, 1674, 3439
Tth111I GACNNNGTC 1 cut(s) 3517
Van91I CCANNNNNTGG 4 cut(s) 500, 1634, 1754, 2744
Vha464I CTTAAG 1 cut(s) 3911
VneI GTGCAC 1 cut(s) 4228
VpaK11BI GGWCC 6 cut(s) 26, 1040, 1161, 1239, 2342, 3298
XapI RAATTY 6 cut(s) 55, 898, 1919, 3250, 3571, 4438
XbaI TCTAGA 3 cut(s) 1457, 3775, 4030
XceI RCATGY 1 cut(s) 2965
XmiI GTMKAC 2 cut(s) 2064, 4085
XmnI GAANNNNTTC 2 cut(s) 146, 4151
Zsp2I ATGCAT 2 cut(s) 271, 2014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.