RLG00000008000

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007814
Physical Location & Seq
Forward (+)
24164702 .. 24172531
7830 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008000

Sequence Viewer

Length: 4761 bp
ATGGACGAAGGTGTGAGATCTGTTGGTCCTTCTGGGGTGTTGGTGAAGAATAGGAATTCTTCGGGGTGTTTAATTGTGAGGAAGAAGCCTGATGGGGTTAGTGGTGGCGTTGGTTCTTCGAGTTCTCGGAAGGTTTTCGAATCGAAGAAGGAGAAGAAGAGGTCGAGGTTGGTGATGAGTGATTCAGGGTCGAGTGATGAGCGGTTGATGCCGAGGAGGAAAGTTGGGCCGGAGACTATTCGGGTTTGTAATGGTTTAGACAAGGGCATTGTGGAAGGGGGAGGAATGGTTCCGAAGAGGGAGAGACTGGAGCATGGTAGGCGGAATGAGGATGGTATGATTGGTACAAATTATTTGGATGATGGGGGAGGAAGGAGAACTAATTTGGAGGTGTTTGAGTTCAATGAGTATGATGGGATTGAGGGACAACCGATGCGGAGGAGTCGGTTCGGCGATGGAGTTATTGGAGTTGATTTTGGGGAGAGAAGATATGCGGGATCCATGCATGTGCCCCGAAGTGGCATTAAGAGGGAATTTGAGACTGGTTCAAGTAGACATCTTGTTGACAAGAGAAAGAACCTGTATCATGACCGGACAAGTAGCTTGAACCGGGGAGATCGTGCTGATAGGGGTAGGTATGAGATGAGTGGCGATGGAGCTCAGCTGCCCTTATTGAGAGACAAGTACATGGGTGTTTCAGATGAACCCATTAGGGTCCAGGGTAAAAATGGTGTTTTGAAGGTGATGGTGAAGAAGAAAAACAATGTGCCTGGGCCACTAGGGAACTATAGTTTTCCAAAATCTGAAGAACATAGAAAAGCTCCAAGAAGTGAGGATATTTCCAAGAAGAATGCTATCATCCCTCCACTTTTCGCAGAACCAAAGCTTCCTGAGAAACCAGGTTCAGCTGTTAGGACAGAGAAAACCCATGTGAGTTTGCGAAAATCATTGCCCACCAAGAACAGCAAGAGCTCTGACTGGGATTCGGAGGACAGTGATACCTCATTGAAGCTAGCAGCAAAGAGTGCTGAAGCCTCTAAACCTATGAAGAGGGCAGGTTGCAAAGTTGAAGATGGTCCTTCATCTGAAAAGACCCCTCCAGCCAAAAATAAAGAAGTCAAACTTAAACGTGGTAGTGGCACAGAGAAGCAGAAACTGCGTGAACGGATAAGGGAGATGCTCCTGAATGCAGGCTGGACCATAGATTATAGGCCTAGAAGGAACAGAGACTACCTGGATGCTGTGTACATTAACCCATCAGGTACAGCTTACTGGTCTATCATTAAGGCTTATGACGCACTTCAAAAGCAAATAAATGAGGAAAATGAGGCTAAACGTAATGGGGATGGTTCTTCACTTGCACCTATAACTGATGACGTACTCAGTCAGTTAACCAGGAAAACTCGAAAGAAGATGGAGAAAGAAATGAAAAGGAAGCAAAGAGCTGACAGTGACAGTGAGAATGCAAAAGGACTCCGGGTGAAAAAACCTAAAAGTGCCAAGCATGATCCAGAGAGCATGGACAGTGTTAGTTATGAGGAGAAACTAAGCTCCTACTTGAAGCAAGGTGGTAAGTCATTCAAGGGTAGAATGTATGAAAACGGTTTGGATTCAAATGGTCAGAGTTCCTCTCATCATTTACATGGCACTGTTGAAAAACCATCTTCTGGATCTAGTTCTCATATGCCACATGGAAGGAAAAGTAGAAAGCTTGGTAGATGTACTTTGTTGGTTCGTAGTTCTAAAAAGGGGCCTAACTCGGAAAGTGATGGCTTTGTTCCATATACTGGAAAACGAACATTGCTCTCCTGGCTGATTGATACTGGAACTGTGCAATTGAGCCAAAAGGTGCAGTATATGAATCGGCGAAGAACTAAAGTAATGCTGGAGGGTTGGATTACAAGAGATGGCATTCACTGTGGTTGCTGTAGTAAGATCCTCACAGTCTCGAAATTTGAGATTCATGCAGGGAGCAAATTGCGCCAGCCATTTCAAAATATATGCTTGGACTCTGGGGTTTCCCTTCTGCAATGTCAGATAGATGCATGGAATAGACAAGAGGATATTGAACGCATTGGTTTCCACTCTGTACAAGTTGACGGTGATGATCCCGATGATGATACTTGTGGCCTCTGTGGAGATGGTGGGGATTTGATCTGTTGTGATGGCTGTCCTTCAACATTTCATCAGAACTGCTTGAACATACAGAAGCTTCCTCCAGGTGAGTGGCACTGCCCAAATTGTATTTGCAAAGTTTGTGGAATAGCTAGTGAGGATGTTGCTGAAGAGGGTGATACAACTGTTTCTGCACTACTGGCTTGTAGTCTCTGTGGGAAGAAATGTCACATATCATGCAGTCAGGAGATGGATGCTAGTCCTGCTGATTCCAATAGTTCAGGCTCTTCCTTTTGTGGGCAGAGATGTAGAGAGCTCTTTGAGAATTTGCAGAGATGTCTCGGGGTCAAACATGAACTAGAAGCAGGATATACGTGGTCACTTGTAAAGAGAACAGATGTAGATAGAGGATTTCCTCTGATGGTTGAATGCAATTCTAAGCTCGCTGTTGCATTGACTGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGACGGAGTGGGATCAATTTAATCCATAATGTTCTATATAATTGTGGATCAAACTTCAATCGGCTGAACTACAGTGGCTTCTACGCTGCTATTTTGGAGAAAGGTGATGAAATAATATCTGCCGCTTCTATCAGGTTTCATGGTACAATGTTAGCAGAGATGCCATTCATCGGAACTCGTCACATATACAGGCGACAAGGGATGTGTCGTAGGCTTTTCTGCGCCATTGAATCGGCTCTCTGCTCTCTGAAGGTTGAGAAGTTGGTTATCCCTGCAATTGCGGAACTCATGCATACATGGACAGGTGTTTTCGGTTTTGTTCCTCTTGAGGAATCATTCAAGCAAGAAGTGAGGTCAATCAATATGTTAGTCTTCCCTGGTATAGACATGCTACAGAAGCTGCTGGTGGACAAAGAAAATGAGACAAACATGACAGGTGTAAAGAAAATGGACGGCATAGGCAAGGATTGTATGAAGCCTGGAGGAGGAGGCAAATCTGATATTGGTTCCCCAGCTAGTCTTGATCATCATGGGAGTGATGGAGCTGGTATGCTTCATATCAATGAAACTGTAGATGAAGCTGCTGATGTGGATTCTGGTTCTCGATGTTTAGGTGTCTCCTTAAATGATACTCCTGTAATGAGTGGCTCTTTGGATGCCTCTGATGAACTCAAAAATTTAGATTCAACTGAAAGGAGTATGTCTTCCGAGTCTCCTACCGGTGACCAATTAGCTGGATCTACTTCTGACGGGAAATGCCTTCCTAATACAAGCCATGAAGTTCTCGAGATAGGAACTAAACCACTGCTGGAGTCTCCTGTTGAGGATAATATGCAGTGTAATTCCAGGTGTCCTGTTGTTTCTTCAAATAATACTTCCATGTTGAATGGTGGTTCGTTAGATGCTTCTCAAGAACAAAACAATCAGATTTCGATCAATGGGACCCTGTCTGCTGACTCTGATTCAGGTGCTAAGTTGGCTGAATATGGTTCTGAAGCAAAATGCCCATCTCCCCCTGAAAGAAGCAGTGAAGCTGTAGACACTGCACTTGTTGAAGATAATGGCTTGTCTACCTCGCAGTGTCCTGGTGCCTCATTAAATAATACTTCCATGATAAGGAGTAATCTAATGGAAGCTTCTCAGGTTCCTGCTAAGGGGACTGCATCTTCCGACTCCGATTCAGTTGCCAAGTTAGATGAATACACTTCTGAAGCAAAATGCCACTCTCCTTCTAAAACAATTGATGCAGCTCTAGAGATTGGAAATGAAACAATACTGCATTCTCCTGTTGAAGGTTCAACCAAGGGGAATCCATCTTTTGACTGTGATTCAGGTGCCAAGTTAACTGAACACACTTCTGAAGTGAAACGCAAGTCTTCCCCTGTTACAAGACATGAAGTTCGAGAGACGGAAAATCAACCAGTGGCAGATTCTCCCATTGAAGATAATATCCAGTCTACCTCTCATAGTCGTGATGCTTCGTTAAATGATACTTCCATGTTGAGTAGTGGTTCACTGAATGCTTTCCATGAACTCAACATTCAGCCTTCAACCAAGGGGACTCCATCCAACTCTGATCAAGGCGCCAAGTTAGCTGAGCACACTTTGGATGCAAAATGTCGGTCTTCTTTGGATACAAGTGATGATCAAATGGTGGGAGTAAAACCATTACTGGATAATTCTTCAAAGTGCTTGAAAGAAAGTGCTTCCGATAATTCCCATGAAGAGAATGTTGATAGGGCCTCCCTTGAGCCTATTCCTTTTTCAGGAGAAACTTTTGCTGGGAACAGTGAGGAAGATGGAAATCCAAATTCCAGTTTCTGTGAGACTGAGAAACAATCATACGTGGCTCCAGAAGTTGCTTCTGATGCAGTGCATTGTGAAAAGAGCATCCCTAAAGCATCTAGTGATGGCTCCGCTACTGATTCTGGGAGGGATGAATCTGGCCACTGGAGGCCTGGAGCTGATGGTGTATGCTCTGATTCGGATTGGGTGAATAAGTGGTATTATTACAACTACAAAGAAATCCTAGCCTTTAGCCATATTCTCAGATTCTGTCATGTACAATTAAGTGGTGAAGTTGCTGCTAAGAAATGCCACCTTGAAAGTCCTAGGTTATTAGAACCTTTGCTCCTACTGTCTGGGCAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003824 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0006323 GO:0006325 GO:0006338 GO:0006355 GO:0006357 GO:0006996 GO:0007063 GO:0007276 GO:0007283 GO:0008150 GO:0008270 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010564 GO:0010605 GO:0010629 GO:0010639 GO:0010948 GO:0016043 GO:0016462 GO:0016581 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017053 GO:0017111 GO:0019219 GO:0019222 GO:0019953 GO:0022414 GO:0030261 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032504 GO:0032879 GO:0032880 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0034728 GO:0035327 GO:0042623 GO:0042766 GO:0043044 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044703 GO:0044877 GO:0045786 GO:0045875 GO:0045892 GO:0045934 GO:0046872 GO:0046914 GO:0048232 GO:0048519 GO:0048523 GO:0048609 GO:0050789 GO:0050794 GO:0051098 GO:0051101 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051312 GO:0051704 GO:0051726 GO:0051983 GO:0051985 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070013 GO:0070603 GO:0070615 GO:0071103 GO:0071824 GO:0071840 GO:0071922 GO:0071923 GO:0080090 GO:0090545 GO:0090568 GO:0097159 GO:1901363 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903828 GO:1904949 GO:1905634 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

1587

Amino Acids

173.24

Weight (kDa)

6.35

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 375 - 437 7.1e-15 Domain of unknown function (DUF7028)
TDBD PF16135 631 - 681 2.7e-21 Tify domain binding domain
PHD PF00628 709 - 748 4.5e-07 PHD-finger
IDM1_C PF23209 864 - 1002 2.5e-58 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1046
AccB1I GGYRCC 3 cut(s) 3695, 3941, 4190
AccB7I CCANNNNNTGG 2 cut(s) 1667, 1787
AccBSI CCGCTC 1 cut(s) 202
AccI GTMKAC 4 cut(s) 553, 3645, 3677, 4064
AciI CCGC 7 cut(s) 202, 322, 436, 494, 2730, 2888, 4524
AclWI GGATC 9 cut(s) 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352
AcoI YGGCCR 1 cut(s) 4552
AcsI RAATTY 6 cut(s) 55, 533, 1952, 2440, 3283, 4417
AcuI CTGAAG 7 cut(s) 825, 1050, 2304, 2876, 3621, 3837, 3987
AcyI GRCGYC 1 cut(s) 4191
AfaI GTAC 9 cut(s) 346, 686, 1247, 1264, 1380, 1723, 2091, 2752, 4671
AgeI ACCGGT 1 cut(s) 3326
AloI GAACNNNNNNTCC 4 cut(s) 273, 305, 4722, 4754
Alw21I GWGCWC 4 cut(s) 661, 974, 2433, 4209
AlwI GGATC 9 cut(s) 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352
AlwNI CAGNNNCTG 4 cut(s) 1156, 3007, 4428, 4662
Ama87I CYCGRG 2 cut(s) 2456, 3392
AoxI GGCC 8 cut(s) 227, 773, 1211, 1751, 2128, 4347, 4552, 4562
ApeKI GCWGC 8 cut(s) 664, 1016, 2693, 3007, 3188, 3854, 4691, 4753
ApoI RAATTY 6 cut(s) 55, 533, 1952, 2440, 3283, 4417
ArsI GACNNNNNNTTYG 4 cut(s) 3990, 4022, 4214, 4246
AsiGI ACCGGT 1 cut(s) 3326
Asp700I GAANNNNTTC 2 cut(s) 134, 4130
AspA2I CCTAGG 1 cut(s) 4718
AspLEI GCGC 3 cut(s) 1983, 2831, 4193
AspS9I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3549, 4347
AsuC2I CCSGG 2 cut(s) 611, 1478
AsuII TTCGAA 1 cut(s) 138
AsuNHI GCTAGC 1 cut(s) 1012
AvaI CYCGRG 2 cut(s) 2456, 3392
AvaII GGWCC 5 cut(s) 26, 715, 1076, 1197, 3549
AvrII CCTAGG 1 cut(s) 4718
BaeGI GKGCMC 1 cut(s) 513
BaeI ACNNNNGTAYC 4 cut(s) 2286, 2319, 3228, 3261
BalI TGGCCA 1 cut(s) 4554
BamHI GGATCC 1 cut(s) 497
BanI GGYRCC 3 cut(s) 3695, 3941, 4190
BanII GRGCYC 3 cut(s) 661, 974, 2433
BbsI GAAGAC 4 cut(s) 2971, 3303, 3975, 4224
Bbv12I GWGCWC 4 cut(s) 661, 974, 2433, 4209
BbvI GCAGC 7 cut(s) 651, 1028, 2680, 2994, 3175, 3866, 4678
BceAI ACGGC 1 cut(s) 3076
BcgI CGANNNNNNTGC 2 cut(s) 3773, 3807
BciVI GTATCC 1 cut(s) 4234
BclI TGATCA 3 cut(s) 3130, 4183, 4252
BcnI CCSGG 2 cut(s) 611, 1478
BfmI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
BfoI RGCGCY 1 cut(s) 4194
BfuAI ACCTGC 1 cut(s) 1046
BfuI GTATCC 1 cut(s) 4234
BglII AGATCT 1 cut(s) 17
BisI GCNGC 9 cut(s) 665, 1017, 2694, 2730, 3008, 3189, 3855, 4692, 4754
BlnI CCTAGG 1 cut(s) 4718
BlpI GCTNAGC 2 cut(s) 660, 4203
BlsI GCNGC 9 cut(s) 666, 1018, 2695, 2731, 3009, 3190, 3856, 4693, 4755
Bme18I GGWCC 5 cut(s) 26, 715, 1076, 1197, 3549
BmeT110I CYCGRG 2 cut(s) 2456, 3392
BmgT120I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3549, 4347
BmrI ACTGGG 1 cut(s) 988
BmtI GCTAGC 1 cut(s) 1016
BmuI ACTGGG 1 cut(s) 988
BpiI GAAGAC 4 cut(s) 2971, 3303, 3975, 4224
BplI GAGNNNNNCTC 2 cut(s) 1615, 1647
BpmI CTGGAG 9 cut(s) 329, 1083, 1907, 2202, 3108, 3437, 4443, 4579, 4587
Bpu10I CCTNAGC 1 cut(s) 3759
Bpu1102I GCTNAGC 2 cut(s) 660, 4203
Bpu14I TTCGAA 1 cut(s) 138
BpuEI CTTGAG 3 cut(s) 2954, 3501, 4376
BpuMI CCSGG 2 cut(s) 611, 1478
BsaAI YACGTR 2 cut(s) 2490, 4453
BsaBI GATNNNNATC 2 cut(s) 3539, 4410
BsaHI GRCGYC 1 cut(s) 4191
BsaJI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3909, 4161, 4718
BsaWI WCCGGW 2 cut(s) 591, 3326
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 4722, 4752
Bse118I RCCGGY 1 cut(s) 3326
Bse3DI GCAATG 3 cut(s) 947, 1799, 2036
Bse8I GATNNNNATC 2 cut(s) 3539, 4410
BseDI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3909, 4161, 4718
BseJI GATNNNNATC 2 cut(s) 3539, 4410
BseMI GCAATG 3 cut(s) 947, 1799, 2036
BseMII CTCAG 7 cut(s) 674, 882, 1396, 3761, 4194, 4428, 4669
BseRI GAGGAG 5 cut(s) 229, 454, 1553, 3105, 3108
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 7 cut(s) 651, 1028, 2680, 2994, 3175, 3866, 4678
BseYI CCCAGC 2 cut(s) 3118, 4388
BsgI GTGCAG 3 cut(s) 1871, 2292, 3636
BshFI GGCC 8 cut(s) 229, 775, 1213, 1753, 2130, 4349, 4554, 4564
BshNI GGYRCC 3 cut(s) 3695, 3941, 4190
BshTI ACCGGT 1 cut(s) 3326
BsiHKAI GWGCWC 4 cut(s) 661, 974, 2433, 4209
BsiHKCI CYCGRG 2 cut(s) 2456, 3392
BsiSI CCGG 5 cut(s) 230, 592, 610, 1477, 3327
BslFI GGGAC 4 cut(s) 438, 3562, 3778, 4180
BsmBI CGTCTC 1 cut(s) 4007
BsmFI GGGAC 4 cut(s) 438, 3562, 3778, 4180
BsmI GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4132
BsnI GGCC 8 cut(s) 229, 775, 1213, 1753, 2130, 4349, 4554, 4564
BsoBI CYCGRG 2 cut(s) 2456, 3392
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 5 cut(s) 513, 661, 974, 2433, 4209
Bsp1407I TGTACA 3 cut(s) 1245, 2089, 4669
Bsp1720I GCTNAGC 2 cut(s) 660, 4203
BspACI CCGC 7 cut(s) 202, 322, 436, 494, 2730, 2888, 4524
BspANI GGCC 8 cut(s) 229, 775, 1213, 1753, 2130, 4349, 4554, 4564
BspCNI CTCAG 7 cut(s) 673, 883, 1395, 3760, 4195, 4429, 4668
BspHI TCATGA 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 1046
BspOI GCTAGC 1 cut(s) 1016
BspPI GGATC 9 cut(s) 492, 505, 1502, 1678, 1930, 2102, 2627, 2662, 3352
BspQI GCTCTTC 1 cut(s) 2407
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 3 cut(s) 3695, 3941, 4190
BsrBI CCGCTC 1 cut(s) 202
BsrDI GCAATG 3 cut(s) 947, 1799, 2036
BsrFI RCCGGY 1 cut(s) 3326
BsrGI TGTACA 3 cut(s) 1245, 2089, 4669
BssAI RCCGGY 1 cut(s) 3326
BssECI CCNNGG 8 cut(s) 212, 610, 718, 770, 2983, 3909, 4161, 4718
BssNI GRCGYC 1 cut(s) 4191
BssT1I CCWWGG 3 cut(s) 3909, 4161, 4718
Bst6I CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4326
BstACI GRCGYC 1 cut(s) 4191
BstAPI GCANNNNNTGC 2 cut(s) 1025, 1156
BstAUI TGTACA 3 cut(s) 1245, 2089, 4669
BstBAI YACGTR 2 cut(s) 2490, 4453
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 1014, 1192, 1985, 2559
BstEII GGTNACC 1 cut(s) 3329
BstENI CCTNNNNNAGG 3 cut(s) 3090, 3897, 4371
BstH2I RGCGCY 1 cut(s) 4194
BstHHI GCGC 3 cut(s) 1983, 2831, 4193
BstNSI RCATGY 2 cut(s) 509, 2998
BstPI GGTNACC 1 cut(s) 3329
BstSFI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 7 cut(s) 651, 1028, 2680, 2994, 3175, 3866, 4678
BstV2I GAAGAC 4 cut(s) 2971, 3303, 3975, 4224
BstX2I RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
BstXI CCANNNNNNTGG 2 cut(s) 2226, 3341
BstYI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
BsuI GTATCC 1 cut(s) 4234
BsuRI GGCC 8 cut(s) 229, 775, 1213, 1753, 2130, 4349, 4554, 4564
BtgZI GCGATG 2 cut(s) 468, 666
BtsI GCAGTG 7 cut(s) 2230, 3410, 3449, 3640, 3648, 3692, 4485
BveI ACCTGC 1 cut(s) 1046
Cac8I GCNNGC 4 cut(s) 1014, 1192, 1985, 2559
CaiI CAGNNNCTG 4 cut(s) 1156, 3007, 4428, 4662
CciI TCATGA 1 cut(s) 586
CfoI GCGC 3 cut(s) 1983, 2831, 4193
Cfr10I RCCGGY 1 cut(s) 3326
Cfr13I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3549, 4347
CseI GACGC 1 cut(s) 1304
CsiI ACCWGGT 1 cut(s) 898
Csp6I GTAC 9 cut(s) 345, 685, 1246, 1263, 1379, 1722, 2090, 2751, 4670
CspAI ACCGGT 1 cut(s) 3326
CspCI CAANNNNNGTGG 2 cut(s) 2239, 2274
CviQI GTAC 9 cut(s) 345, 685, 1246, 1263, 1379, 1722, 2090, 2751, 4670
DinI GGCGCC 1 cut(s) 4192
EaeI YGGCCR 1 cut(s) 4552
Eam1104I CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4326
EarI CTCTTC 6 cut(s) 152, 290, 1043, 2280, 2407, 4326
EciI GGCGGA 1 cut(s) 337
Ecl136II GAGCTC 3 cut(s) 659, 972, 2431
Eco130I CCWWGG 3 cut(s) 3909, 4161, 4718
Eco147I AGGCCT 2 cut(s) 1213, 4564
Eco24I GRGCYC 3 cut(s) 661, 974, 2433
Eco47I GGWCC 5 cut(s) 26, 715, 1076, 1197, 3549
Eco53kI GAGCTC 3 cut(s) 659, 972, 2431
Eco57I CTGAAG 7 cut(s) 825, 1050, 2304, 2876, 3621, 3837, 3987
Eco88I CYCGRG 2 cut(s) 2456, 3392
Eco91I GGTNACC 1 cut(s) 3329
EcoICRI GAGCTC 3 cut(s) 659, 972, 2431
EcoNI CCTNNNNNAGG 3 cut(s) 3090, 3897, 4371
EcoO109I RGGNCCY 3 cut(s) 1751, 3549, 4347
EcoO65I GGTNACC 1 cut(s) 3329
EcoRI GAATTC 1 cut(s) 55
EcoT14I CCWWGG 3 cut(s) 3909, 4161, 4718
EcoT22I ATGCAT 3 cut(s) 507, 2047, 2901
EcoT38I GRGCYC 3 cut(s) 661, 974, 2433
EgeI GGCGCC 1 cut(s) 4192
EheI GGCGCC 1 cut(s) 4192
ErhI CCWWGG 3 cut(s) 3909, 4161, 4718
Esp3I CGTCTC 1 cut(s) 4007
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FaqI GGGAC 4 cut(s) 438, 3562, 3778, 4180
FauI CCCGC 1 cut(s) 487
FauNDI CATATG 1 cut(s) 1683
FbaI TGATCA 3 cut(s) 3130, 4183, 4252
FblI GTMKAC 4 cut(s) 553, 3645, 3677, 4064
Fnu4HI GCNGC 9 cut(s) 665, 1017, 2694, 2730, 3008, 3189, 3855, 4692, 4754
FriOI GRGCYC 3 cut(s) 661, 974, 2433
Fsp4HI GCNGC 9 cut(s) 665, 1017, 2694, 2730, 3008, 3189, 3855, 4692, 4754
GlaI GCGC 3 cut(s) 1982, 2830, 4192
GluI GCNGC 9 cut(s) 665, 1017, 2694, 2730, 3008, 3189, 3855, 4692, 4754
GsaI CCCAGC 2 cut(s) 3122, 4392
GsuI CTGGAG 9 cut(s) 329, 1083, 1907, 2202, 3108, 3437, 4443, 4579, 4587
HaeII RGCGCY 1 cut(s) 4194
HaeIII GGCC 8 cut(s) 229, 775, 1213, 1753, 2130, 4349, 4554, 4564
HapII CCGG 5 cut(s) 230, 592, 610, 1477, 3327
HgaI GACGC 1 cut(s) 1304
HhaI GCGC 3 cut(s) 1983, 2831, 4193
Hin1I GRCGYC 1 cut(s) 4191
Hin6I GCGC 3 cut(s) 1981, 2829, 4191
HinP1I GCGC 3 cut(s) 1981, 2829, 4191
HincII GTYRAC 5 cut(s) 565, 1392, 2098, 2605, 3951
HindII GTYRAC 5 cut(s) 565, 1392, 2098, 2605, 3951
HindIII AAGCTT 4 cut(s) 884, 1709, 2210, 3741
HpaI GTTAAC 2 cut(s) 1392, 3951
HpaII CCGG 5 cut(s) 230, 592, 610, 1477, 3327
HpyCH4IV ACGT 5 cut(s) 1129, 1336, 1377, 2489, 4452
HpySE526I ACGT 5 cut(s) 1129, 1336, 1377, 2489, 4452
Hsp92I GRCGYC 1 cut(s) 4191
HspAI GCGC 3 cut(s) 1981, 2829, 4191
KasI GGCGCC 1 cut(s) 4190
KflI GGGWCCC 1 cut(s) 3549
Ksp22I TGATCA 3 cut(s) 3130, 4183, 4252
KspAI GTTAAC 2 cut(s) 1392, 3951
LguI GCTCTTC 1 cut(s) 2407
Lsp1109I GCAGC 7 cut(s) 651, 1028, 2680, 2994, 3175, 3866, 4678
MabI ACCWGGT 1 cut(s) 898
MaeII ACGT 5 cut(s) 1129, 1336, 1377, 2489, 4452
MaeIII GTNAC 6 cut(s) 1451, 2342, 2493, 2786, 3329, 3991
MbiI CCGCTC 1 cut(s) 202
MfeI CAATTG 3 cut(s) 1835, 2883, 3846
MflI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
MhlI GDGCHC 5 cut(s) 513, 661, 974, 2433, 4209
MlsI TGGCCA 1 cut(s) 4554
MluNI TGGCCA 1 cut(s) 4554
Mly113I GGCGCC 1 cut(s) 4191
MlyI GAGTC 8 cut(s) 451, 1467, 2003, 3326, 3428, 3557, 3773, 4162
MmeI TCCRAC 3 cut(s) 1874, 3801, 4200
Mox20I TGGCCA 1 cut(s) 4554
Mph1103I ATGCAT 3 cut(s) 507, 2047, 2901
MroXI GAANNNNTTC 2 cut(s) 134, 4130
MscI TGGCCA 1 cut(s) 4554
MslI CAYNNNNRTG 5 cut(s) 506, 1641, 3141, 3168, 4077
Msp20I TGGCCA 1 cut(s) 4554
MspA1I CMGCKG 2 cut(s) 664, 908
MspI CCGG 5 cut(s) 230, 592, 610, 1477, 3327
MunI CAATTG 3 cut(s) 1835, 2883, 3846
Mva1269I GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4132
NarI GGCGCC 1 cut(s) 4191
NciI CCSGG 2 cut(s) 611, 1478
NdeI CATATG 1 cut(s) 1683
NheI GCTAGC 1 cut(s) 1012
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 5 cut(s) 1451, 2342, 2493, 2786, 3329
NsiI ATGCAT 3 cut(s) 507, 2047, 2901
NspI RCATGY 2 cut(s) 509, 2998
NspV TTCGAA 1 cut(s) 138
PaeR7I CTCGAG 1 cut(s) 3392
PagI TCATGA 1 cut(s) 586
PceI AGGCCT 2 cut(s) 1213, 4564
PciSI GCTCTTC 1 cut(s) 2407
PctI GAATGC 8 cut(s) 856, 1192, 1468, 1911, 2549, 2591, 3886, 4132
PdmI GAANNNNTTC 2 cut(s) 134, 4130
PflFI GACNNNGTC 1 cut(s) 3553
PflMI CCANNNNNTGG 2 cut(s) 1667, 1787
PinAI ACCGGT 1 cut(s) 3326
PkrI GCNGC 9 cut(s) 666, 1018, 2695, 2731, 3009, 3190, 3856, 4693, 4755
PleI GAGTC 8 cut(s) 450, 1467, 2003, 3325, 3427, 3557, 3773, 4162
PluTI GGCGCC 1 cut(s) 4194
PpsI GAGTC 8 cut(s) 450, 1467, 2003, 3325, 3427, 3557, 3773, 4162
Ppu21I YACGTR 2 cut(s) 2490, 4453
PpuMI RGGWCCY 1 cut(s) 3549
Psp124BI GAGCTC 3 cut(s) 661, 974, 2433
Psp5II RGGWCCY 1 cut(s) 3549
PspEI GGTNACC 1 cut(s) 3329
PspFI CCCAGC 2 cut(s) 3118, 4388
PspPI GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3549, 4347
PspPPI RGGWCCY 1 cut(s) 3549
PsrI GAACNNNNNNTAC 2 cut(s) 1214, 1246
PstNI CAGNNNCTG 4 cut(s) 1156, 3007, 4428, 4662
PsuI RGATCY 5 cut(s) 17, 497, 1670, 1935, 3344
PsyI GACNNNGTC 1 cut(s) 3553
PvuII CAGCTG 2 cut(s) 664, 908
RsaI GTAC 9 cut(s) 346, 686, 1247, 1264, 1380, 1723, 2091, 2752, 4671
RsaNI GTAC 9 cut(s) 345, 685, 1246, 1263, 1379, 1722, 2090, 2751, 4670
RseI CAYNNNNRTG 5 cut(s) 506, 1641, 3141, 3168, 4077
SacI GAGCTC 3 cut(s) 661, 974, 2433
SapI GCTCTTC 1 cut(s) 2407
SatI GCNGC 9 cut(s) 665, 1017, 2694, 2730, 3008, 3189, 3855, 4692, 4754
Sau96I GGNCC 9 cut(s) 26, 227, 715, 773, 1076, 1197, 1751, 3549, 4347
SchI GAGTC 8 cut(s) 451, 1467, 2003, 3326, 3428, 3557, 3773, 4162
SduI GDGCHC 5 cut(s) 513, 661, 974, 2433, 4209
SexAI ACCWGGT 1 cut(s) 898
SfcI CTRYAG 6 cut(s) 787, 1927, 2677, 2999, 3177, 3642
SfoI GGCGCC 1 cut(s) 4192
Sfr274I CTCGAG 1 cut(s) 3392
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 5 cut(s) 26, 715, 1076, 1197, 3549
SlaI CTCGAG 1 cut(s) 3392
SmiMI CAYNNNNRTG 5 cut(s) 506, 1641, 3141, 3168, 4077
SmlI CTYRAG 4 cut(s) 2933, 3392, 3516, 4355
SmoI CTYRAG 4 cut(s) 2933, 3392, 3516, 4355
SseBI AGGCCT 2 cut(s) 1213, 4564
SsiI CCGC 7 cut(s) 202, 322, 436, 494, 2730, 2888, 4524
SspDI GGCGCC 1 cut(s) 4190
SstI GAGCTC 3 cut(s) 661, 974, 2433
StuI AGGCCT 2 cut(s) 1213, 4564
StyI CCWWGG 3 cut(s) 3909, 4161, 4718
TaiI ACGT 5 cut(s) 1132, 1339, 1380, 2492, 4455
TaqII GACCGA 1 cut(s) 4218
TatI WGTACW 5 cut(s) 684, 1245, 1721, 2089, 4669
TauI GCSGC 1 cut(s) 2732
TseFI GTSAC 5 cut(s) 1451, 2342, 2493, 2786, 3329
TseI GCWGC 8 cut(s) 664, 1016, 2693, 3007, 3188, 3854, 4691, 4753
Tsp45I GTSAC 5 cut(s) 1451, 2342, 2493, 2786, 3329
TspGWI ACGGA 3 cut(s) 1180, 2626, 4031
Tth111I GACNNNGTC 1 cut(s) 3553
Van91I CCANNNNNTGG 2 cut(s) 1667, 1787
VpaK11BI GGWCC 5 cut(s) 26, 715, 1076, 1197, 3549
XagI CCTNNNNNAGG 3 cut(s) 3090, 3897, 4371
XapI RAATTY 6 cut(s) 55, 533, 1952, 2440, 3283, 4417
XbaI TCTAGA 1 cut(s) 3859
XceI RCATGY 2 cut(s) 509, 2998
XcmI CCANNNNNNNNNTGG 2 cut(s) 725, 4562
XhoI CTCGAG 1 cut(s) 3392
XmaJI CCTAGG 1 cut(s) 4718
XmiI GTMKAC 4 cut(s) 553, 3645, 3677, 4064
XmnI GAANNNNTTC 2 cut(s) 134, 4130
Zsp2I ATGCAT 3 cut(s) 507, 2047, 2901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.