Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

9284910 .. 9286773

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAGGGAGAGGCAGTTGAATCTAGGAGTAGTAGGAAGGAGCAGGAAAGGGAAAGAAGGCGTCTACGAGACAGAGAAAGAAGACAATCAATGAGCCAGGATGAGAGGGAAAGGCATTTGGCTCGGCGCCGCAAGAACTACCAGCTGAGAAGGCAGAGAGCTGAGGTAAACCGCCTTGACTCTCCGATCCAAGCAATCACTGGAGGCAACCAAGCAGCACTGAATTCACCGCCTGATTCTGGAGCCAGCTTTGTTGAGTCTGATCAGAGTGTGGTAATACCAGTGGAAGAGCTGGCTAAGATGATGGGGACTATACGGCTGACACGTCTGAAACATCTGGCGAGGACACTGAACAAGTCCAGCACTAGTACTGGTGCAGAGTCAAGCAACACAGGAGCAACAGACGCAAAGACAAGATGTGCAATGTCAAATGGGCTACGTCTGAGTCGGATAAAACGACTGGTGAGATTTAAGGGCCAGCAACTGAGGATCTTGTCACATTCCCAAACACCAGAACCTCAGCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

176

Amino Acids

20.1

Weight (kDa)

11.28

Isoelectric Point (pI)

77.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	64
AciI	CCGC	3 cut(s)	130, 172, 230
AclWI	GGATC	2 cut(s)	181, 497
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	2 cut(s)	61, 127
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	323
AgsI	TTSAA	1 cut(s)	20
AhlI	ACTAGT	1 cut(s)	365
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	145, 161, 249, 292, 523
AluI	AGCT	5 cut(s)	145, 161, 249, 292, 523
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	181, 497
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	219, 475
BanI	GGYRCC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	88
BbvCI	CCTCAGC	2 cut(s)	162, 519
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	298
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	63
BcuI	ACTAGT	1 cut(s)	365
BfaI	CTAG	3 cut(s)	24, 366, 529
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	2 cut(s)	130, 216
BlsI	GCNGC	2 cut(s)	131, 217
BmcAI	AGTACT	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	98
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	128, 244
BmrFI	CCNGG	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	222, 261
Bpu10I	CCTNAGC	2 cut(s)	162, 519
BsaHI	GRCGYC	2 cut(s)	61, 127
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	4 cut(s)	205, 281, 376, 465
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	137, 153, 434, 476
BseNI	ACTGG	4 cut(s)	205, 281, 376, 465
BseXI	GCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	186, 262, 489
BspACI	CCGC	3 cut(s)	130, 172, 230
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	4 cut(s)	138, 154, 435, 477
BspLI	GGNNCC	2 cut(s)	128, 244
BspPI	GGATC	2 cut(s)	181, 497
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	205, 281, 376, 465
BssMI	GATC	3 cut(s)	186, 262, 489
BssNI	GRCGYC	2 cut(s)	61, 127
Bst2UI	CCWGG	1 cut(s)	98
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	2 cut(s)	61, 127
BstC8I	GCNNGC	3 cut(s)	247, 294, 479
BstDEI	CTNAG	6 cut(s)	146, 162, 297, 443, 485, 519
BstF5I	GGATG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	3 cut(s)	189, 265, 492
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	3 cut(s)	186, 262, 489
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 404
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	477
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	4 cut(s)	198, 218, 288, 347
Cac8I	GCNNGC	3 cut(s)	247, 294, 479
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	475
CseI	GACGC	2 cut(s)	50, 413
Csp6I	GTAC	1 cut(s)	369
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	6 cut(s)	146, 162, 297, 443, 485, 519
DinI	GGCGCC	1 cut(s)	128
DpnI	GATC	3 cut(s)	188, 264, 491
DpnII	GATC	3 cut(s)	186, 262, 489
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	96
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
FaiI	YATR	1 cut(s)	314
FaqI	GGGAC	1 cut(s)	322
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	130, 216
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	2 cut(s)	130, 216
FspBI	CTAG	3 cut(s)	24, 366, 529
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	130, 216
GsuI	CTGGAG	2 cut(s)	222, 261
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	477
HgaI	GACGC	2 cut(s)	50, 413
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	2 cut(s)	61, 127
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	6 cut(s)	20, 179, 236, 257, 380, 445
HphI	GGTGA	2 cut(s)	219, 475
Hpy166II	GTNNAC	2 cut(s)	65, 169
Hpy188I	TCNGA	6 cut(s)	186, 262, 267, 330, 444, 450
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	2 cut(s)	65, 169
HpyAV	CCTTC	3 cut(s)	31, 51, 144
HpyCH4IV	ACGT	2 cut(s)	325, 439
HpyCH4V	TGCA	2 cut(s)	377, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 404
HpyF3I	CTNAG	6 cut(s)	146, 162, 297, 443, 485, 519
HpySE526I	ACGT	2 cut(s)	325, 439
Hsp92I	GRCGYC	2 cut(s)	61, 127
HspAI	GCGC	1 cut(s)	127
KasI	GGCGCC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	186, 262, 489
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	3 cut(s)	40, 242, 395
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	3 cut(s)	24, 366, 529
MaeII	ACGT	2 cut(s)	325, 439
MaeIII	GTNAC	1 cut(s)	495
MalI	GATC	3 cut(s)	188, 264, 491
MboI	GATC	3 cut(s)	186, 262, 489
MboII	GAAGA	2 cut(s)	93, 299
MflI	RGATCY	1 cut(s)	489
MluCI	AATT	1 cut(s)	223
Mly113I	GGCGCC	1 cut(s)	127
MlyI	GAGTC	4 cut(s)	173, 266, 389, 454
MmeI	TCCRAC	1 cut(s)	428
MnlI	CCTC	7 cut(s)	4, 99, 157, 197, 336, 480, 528
MseI	TTAA	1 cut(s)	471
MspA1I	CMGCKG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	151, 404
NarI	GGCGCC	1 cut(s)	127
NdeII	GATC	3 cut(s)	186, 262, 489
NlaIV	GGNNCC	2 cut(s)	128, 244
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	2 cut(s)	322, 454
PfeI	GAWTC	2 cut(s)	20, 236
PkrI	GCNGC	2 cut(s)	131, 217
PleI	GAGTC	4 cut(s)	173, 265, 388, 453
PluTI	GGCGCC	1 cut(s)	130
PpsI	GAGTC	4 cut(s)	173, 265, 388, 453
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	2 cut(s)	128, 244
PspPI	GGNCC	1 cut(s)	475
PstNI	CAGNNNCTG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	145
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	130, 216
Sau3AI	GATC	3 cut(s)	186, 262, 489
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	1 cut(s)	370
SchI	GAGTC	4 cut(s)	173, 266, 389, 454
ScrFI	CCNGG	1 cut(s)	98
SetI	ASST	9 cut(s)	147, 163, 168, 251, 294, 328, 442, 520, 525
SfoI	GGCGCC	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	365
Sse9I	AATT	1 cut(s)	223
SsiI	CCGC	3 cut(s)	130, 172, 230
SspDI	GGCGCC	1 cut(s)	126
SspMI	CTAG	3 cut(s)	24, 366, 529
StyD4I	CCNGG	1 cut(s)	96
TaiI	ACGT	2 cut(s)	328, 442
TasI	AATT	1 cut(s)	223
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	132
TfiI	GAWTC	2 cut(s)	20, 236
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	4 cut(s)	205, 225, 288, 354
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	495
TspRI	CASTG	4 cut(s)	205, 225, 288, 354
XapI	RAATTY	1 cut(s)	223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	64
XspI	CTAG	3 cut(s)	24, 366, 529
ZrmI	AGTACT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.