Rorug04G0387600

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008098
Physical Location & Seq
Reverse (-)
55650667 .. 55653177
2511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0387600.1

Sequence Viewer

Length: 588 bp
ATGGCTGCTTTAGTATATATAGTGCTTTTCTTGGCCCTCACTGGGCATTCAAGTGCTACTTATTGCATATGTAAAGATGGGGTTGGTGATGCTGCTCTTCAGAAGGCACTGGACTATGCTTGTGGAGCTGGAGCTGACTGTACACCAATCATTCAAAACGGTGCGTGTTACAACCCCAACACAGTCAAAGACCACTGCAACTGGGCTGTTAATAGCTATTTCCAGAAGAAGGGTCAAACCCAAATGAGCTGTGACTTTGCAGGAGCTGCCACTATTAGCCAAACTCCTCCAACTACCACGAGTTCCAGTTGTGTTTATCCTGCAAGTGGCAGTAATTCCACCACAAACTCAACCACCACTACTCCAAGCACAACTCCAACCACAGGCACAACCCCAACCACAACTCCAACCACCGGCGGCACGACGACTCCAACCACAGGCACAACAACCCCCAGTACAACTCCCTCAGTCTTTGGAATAAGCCCAACAGGGAGTTCACTCACTGATTCAAGCCCTGATATGGCTCCTCACTTCATCGCAGCAGCAGCAGCTTTCTCCTTTTCAGTGTTTTTGTTGCTGTGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

19.81

Weight (kDa)

5.25

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 21 - 91 2.3e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 83
AfaI GTAC 2 cut(s) 142, 457
AfiI CCNNNNNNNGG 7 cut(s) 42, 229, 326, 383, 413, 437, 520
AgsI TTSAA 3 cut(s) 51, 155, 510
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 6 cut(s) 128, 134, 216, 249, 266, 551
AluI AGCT 6 cut(s) 128, 134, 216, 249, 266, 551
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 7 cut(s) 5, 92, 266, 539, 542, 545, 548
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 98
BauI CACGAG 1 cut(s) 298
BbvI GCAGC 6 cut(s) 79, 253, 551, 554, 557, 560
BccI CCATC 1 cut(s) 71
BisI GCNGC 8 cut(s) 6, 93, 267, 418, 540, 543, 546, 549
BlsI GCNGC 8 cut(s) 7, 94, 268, 419, 541, 544, 547, 550
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 525
BmrI ACTGGG 3 cut(s) 51, 211, 447
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 3 cut(s) 51, 211, 447
BpmI CTGGAG 1 cut(s) 150
BsaXI ACNNNNNCTCC 6 cut(s) 346, 376, 388, 412, 418, 442
Bsc4I CCNNNNNNNGG 7 cut(s) 42, 229, 326, 383, 413, 437, 520
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 5 cut(s) 46, 114, 206, 306, 453
BseLI CCNNNNNNNGG 7 cut(s) 42, 229, 326, 383, 413, 437, 520
BseMII CTCAG 1 cut(s) 480
BseNI ACTGG 5 cut(s) 46, 114, 206, 306, 453
BseRI GAGGAG 2 cut(s) 276, 516
BseXI GCAGC 6 cut(s) 79, 253, 551, 554, 557, 560
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 414
BslI CCNNNNNNNGG 7 cut(s) 42, 229, 326, 383, 413, 437, 520
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 1 cut(s) 35
Bsp1407I TGTACA 1 cut(s) 140
BspACI CCGC 1 cut(s) 417
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 525
BspQI GCTCTTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 413
BsrGI TGTACA 1 cut(s) 140
BsrI ACTGG 5 cut(s) 46, 114, 206, 306, 453
BssAI RCCGGY 1 cut(s) 413
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst4CI ACNGT 3 cut(s) 140, 161, 184
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 266
BstAUI TGTACA 1 cut(s) 140
BstDEI CTNAG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 125, 266, 545, 548
BstV1I GCAGC 6 cut(s) 79, 253, 551, 554, 557, 560
BsuRI GGCC 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 520
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 5 cut(s) 39, 107, 193, 501, 570
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 141, 456
CviQI GTAC 2 cut(s) 141, 456
DdeI CTNAG 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 83
FaiI YATR 7 cut(s) 16, 18, 20, 68, 70, 117, 521
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FauNDI CATATG 1 cut(s) 68
Fnu4HI GCNGC 8 cut(s) 6, 93, 267, 418, 540, 543, 546, 549
Fsp4HI GCNGC 8 cut(s) 6, 93, 267, 418, 540, 543, 546, 549
GluI GCNGC 8 cut(s) 6, 93, 267, 418, 540, 543, 546, 549
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 414
HinfI GANTC 2 cut(s) 427, 506
HpaII CCGG 1 cut(s) 414
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 2 cut(s) 143, 497
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 2 cut(s) 143, 497
Hpy99I CGWCG 1 cut(s) 427
HpyAV CCTTC 2 cut(s) 97, 223
HpyCH4III ACNGT 3 cut(s) 140, 161, 184
HpyCH4V TGCA 4 cut(s) 66, 198, 260, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 266, 545, 548
HpyF3I CTNAG 1 cut(s) 466
LguI GCTCTTC 1 cut(s) 102
LmnI GCTCC 4 cut(s) 125, 131, 263, 529
Lsp1109I GCAGC 6 cut(s) 79, 253, 551, 554, 557, 560
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 167, 251
MboII GAAGA 2 cut(s) 89, 238
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 4 cut(s) 314, 401, 431, 455
MnlI CCTC 4 cut(s) 47, 297, 475, 537
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 1 cut(s) 414
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 4 cut(s) 125, 266, 545, 548
NdeI CATATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 525
NmuCI GTSAC 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 102
PctI GAATGC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 506
PkrI GCNGC 8 cut(s) 7, 94, 268, 419, 541, 544, 547, 550
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 1 cut(s) 34
PstNI CAGNNNCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 142, 457
RsaNI GTAC 2 cut(s) 141, 456
RseI CAYNNNNRTG 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 8 cut(s) 6, 93, 267, 418, 540, 543, 546, 549
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 421
SetI ASST 6 cut(s) 130, 136, 218, 251, 268, 553
SfaNI GCATC 1 cut(s) 79
SgrAI CRCCGGYG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 51
Sse9I AATT 1 cut(s) 334
SsiI CCGC 1 cut(s) 417
TaaI ACNGT 3 cut(s) 140, 161, 184
TasI AATT 1 cut(s) 334
TatI WGTACW 2 cut(s) 140, 455
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 5 cut(s) 46, 114, 200, 508, 570
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 7 cut(s) 5, 92, 266, 539, 542, 545, 548
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 523
TspRI CASTG 5 cut(s) 46, 114, 200, 508, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.