Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000255.1

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

94410 .. 95723

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000255.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atgcgaacaacaacaatgaaggagtcgttagatagatcagagttgcggagaatgcaaagagagcaagagcgcgaacgacgtcgtatcagggaccggcagagacgccagtccatgacggttgaacagagagaacgacatctggctcggcgtcgtaggaactatcagctcagaagactgagagctgaaaatgccaaggtggatttccattctaatcaaatcagcaatgaacaacatgaagcagtgagtgatgttcaagaagttactcagggtgaaaacttgagcatacagcctttgcagtactccgagtgtttggatggcgtggcttgtaaaggttctaatttgaacgtccaacggttgcggttgagtcatgtaaggcggcttgcacgatcggggagtcgtttagggtgtttggatggcgtggcttgtaaaggttctaatttgaacgtccaacggctgcggttgagtcatgtaaggcggcttgcacgatcggggagtcgtttagggtgtgaggttattgctgatcaccaaattggaggagaggtggtagtaaagggtgatcccaataatacgtcttgtttccaaattggagattttgattctggtagattgccaaatggactacgtttgaatcgtgttaagcggcttgcacgggcaataaatactgcttcgaatgaggcttctgttaatggtcaagtaatagaaaaaaacacgatggatcagaatcattcccagggagaaagtcaagggattagtaatgacagctctaatttggacagactatcgcttgcagaggtgaagttgaaggacctaacatggacggataaacacccagcatgggctaatgttgagagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

32.41

Weight (kDa)

10.24

Isoelectric Point (pI)

57.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	82
AccII	CGCG	1 cut(s)	72
AciI	CCGC	6 cut(s)	46, 358, 376, 457, 475, 640
AclWI	GGATC	2 cut(s)	551, 723
AcyI	GRCGYC	3 cut(s)	79, 103, 148
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	835
AgsI	TTSAA	6 cut(s)	122, 254, 343, 442, 628, 802
AjnI	CCWGG	1 cut(s)	729
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	166, 182, 762
AluI	AGCT	3 cut(s)	166, 182, 762
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	551, 723
ApeKI	GCWGC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	91, 805
AsuHPI	GGTGA	4 cut(s)	281, 515, 566, 805
AsuII	TTCGAA	1 cut(s)	668
AvaII	GGWCC	2 cut(s)	91, 805
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	441
BccI	CCATC	3 cut(s)	308, 407, 706
BceAI	ACGGC	1 cut(s)	467
BciT130I	CCWGG	1 cut(s)	731
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	4 cut(s)	377, 455, 476, 641
BlsI	GCNGC	4 cut(s)	378, 456, 477, 642
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	2 cut(s)	91, 805
BmgT120I	GGNCC	2 cut(s)	91, 805
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	731
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	668
BpuEI	CTTGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	720
BsaHI	GRCGYC	3 cut(s)	79, 103, 148
BsaJI	CCNNGG	3 cut(s)	192, 729, 730
BsaXI	ACNNNNNCTCC	4 cut(s)	525, 528, 555, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	835
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	3 cut(s)	192, 729, 730
BseGI	GGATG	2 cut(s)	319, 418
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	1 cut(s)	835
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	167, 181, 278
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	441
BseYI	CCCAGC	1 cut(s)	829
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	2 cut(s)	389, 488
BsiEI	CGRYCG	2 cut(s)	389, 488
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	835
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	668
Bsp143I	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
BspACI	CCGC	6 cut(s)	46, 358, 376, 457, 475, 640
BspCNI	CTCAG	3 cut(s)	168, 180, 277
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	2 cut(s)	551, 723
BspT104I	TTCGAA	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	192, 729, 730
BssMI	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
BssNI	GRCGYC	3 cut(s)	79, 103, 148
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	118, 354
BstACI	GRCGYC	3 cut(s)	79, 103, 148
BstBI	TTCGAA	1 cut(s)	668
BstC8I	GCNNGC	4 cut(s)	381, 480, 645, 786
BstDEI	CTNAG	3 cut(s)	167, 176, 264
BstF5I	GGATG	2 cut(s)	319, 418
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	6 cut(s)	38, 389, 488, 523, 559, 718
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
BstMCI	CGRYCG	2 cut(s)	389, 488
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 61, 188
BstNI	CCWGG	1 cut(s)	731
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	441
BstV2I	GAAGAC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	319, 418
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	4 cut(s)	381, 480, 645, 786
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	91, 805
CseI	GACGC	2 cut(s)	111, 137
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	6 cut(s)	112, 233, 368, 467, 813, 834
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	167, 176, 264
DpnI	GATC	6 cut(s)	37, 388, 487, 522, 558, 717
DpnII	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	91, 805
EcoO109I	RGGNCCY	1 cut(s)	805
EcoRII	CCWGG	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	6 cut(s)	115, 236, 371, 470, 816, 837
FaiI	YATR	7 cut(s)	113, 234, 284, 369, 468, 814, 835
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	6 cut(s)	111, 232, 367, 466, 812, 833
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	377, 455, 476, 641
FokI	GGATG	2 cut(s)	326, 425
Fsp4HI	GCNGC	4 cut(s)	377, 455, 476, 641
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	4 cut(s)	377, 455, 476, 641
GsaI	CCCAGC	1 cut(s)	833
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	2 cut(s)	111, 137
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	3 cut(s)	79, 103, 148
Hin1II	CATG	6 cut(s)	115, 236, 371, 470, 816, 837
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	8 cut(s)	23, 364, 394, 463, 493, 596, 628, 721
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	4 cut(s)	281, 515, 566, 805
Hpy188I	TCNGA	4 cut(s)	40, 170, 304, 720
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	3 cut(s)	81, 84, 153
HpyAV	CCTTC	2 cut(s)	13, 796
HpyCH4III	ACNGT	2 cut(s)	118, 354
HpyCH4IV	ACGT	5 cut(s)	79, 345, 444, 569, 622
HpyCH4V	TGCA	6 cut(s)	55, 295, 383, 482, 647, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 61, 188
HpyF3I	CTNAG	3 cut(s)	167, 176, 264
HpySE526I	ACGT	5 cut(s)	79, 345, 444, 569, 622
Hsp92I	GRCGYC	3 cut(s)	79, 103, 148
Hsp92II	CATG	6 cut(s)	115, 236, 371, 470, 816, 837
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
LpnPI	CCDG	9 cut(s)	73, 107, 119, 125, 251, 585, 716, 743, 843
Lsp1109I	GCAGC	1 cut(s)	441
MaeII	ACGT	5 cut(s)	79, 345, 444, 569, 622
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	6 cut(s)	37, 388, 487, 522, 558, 717
MboI	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	5 cut(s)	337, 436, 528, 582, 766
MlyI	GAGTC	5 cut(s)	32, 373, 403, 472, 502
MmeI	TCCRAC	2 cut(s)	373, 472
MnlI	CCTC	5 cut(s)	502, 527, 532, 667, 784
MseI	TTAA	3 cut(s)	636, 684, 853
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	731
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	731
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	52, 61, 188
NdeII	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
NlaIII	CATG	6 cut(s)	115, 236, 371, 470, 816, 837
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	668
PasI	CCCWGGG	1 cut(s)	730
PcsI	WCGNNNNNNNCGW	1 cut(s)	628
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	596, 628, 721
PkrI	GCNGC	4 cut(s)	378, 456, 477, 642
Ple19I	CGATCG	2 cut(s)	389, 488
PleI	GAGTC	5 cut(s)	31, 372, 402, 471, 501
PpsI	GAGTC	5 cut(s)	31, 372, 402, 471, 501
PpuMI	RGGWCCY	1 cut(s)	805
PshAI	GACNNNNGTC	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	91, 805
PspPPI	RGGWCCY	1 cut(s)	805
PvuI	CGATCG	2 cut(s)	389, 488
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	636, 684, 853
SatI	GCNGC	4 cut(s)	377, 455, 476, 641
Sau3AI	GATC	6 cut(s)	35, 386, 485, 520, 556, 715
Sau96I	GGNCC	2 cut(s)	91, 805
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	5 cut(s)	32, 373, 403, 472, 502
ScrFI	CCNGG	1 cut(s)	731
SfuI	TTCGAA	1 cut(s)	668
SinI	GGWCC	2 cut(s)	91, 805
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	5 cut(s)	337, 436, 528, 582, 766
SsiI	CCGC	6 cut(s)	46, 358, 376, 457, 475, 640
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	118, 354
TaiI	ACGT	5 cut(s)	82, 348, 447, 572, 625
TaqI	TCGA	1 cut(s)	668
TasI	AATT	5 cut(s)	337, 436, 528, 582, 766
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	3 cut(s)	379, 478, 643
TfiI	GAWTC	3 cut(s)	596, 628, 721
Tru1I	TTAA	3 cut(s)	636, 684, 853
Tru9I	TTAA	3 cut(s)	636, 684, 853
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	32, 240, 249
TspGWI	ACGGA	1 cut(s)	833
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	91, 805
ZraI	GACGTC	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.