Rw5G000760

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0008098
Physical Location & Seq
Forward (+)
523417 .. 526054
2638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G000760.1

Sequence Viewer

Length: 948 bp
ATGCGAACAACAACAATGAAGGAGTCGTTAGATAGATCAGAGTTGCGGAGAATGCAAAGAGAGCAAGAGCGCGAACGACGTCGTATCAGGGACCGGCAGAGACGGCAGTCCATGACGGTTGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCATTCTAATCAAATCAGCAATGAACAACATGAAGCAGTGAGTGATGTTCAGGAAGTTACTCAGGGTGAAAACTTGAGCATACAGCCTTTGCAGTACTCCGAGTGTTTGGATGGCGTGGCTTGTAAAGGTTCTAATTTGAACGTCCAACGGCTGCGGTTGAGTCATGTAAGGCGGCTTGCACGATCGGGGAGTCGTTTAGGGTGTGAGGTTATTGCTGATCACCAAATTGGAGGAGAGGTGGTAGTAAAGGGTGATGCCAATAATACGTCTTGTTTCCAAATTGGAGATTTTGATTCTGGTAGATTGCCAAATGGACTACGTTTGAATCGTGTTAAGCGGCTTGCACGGGCAATAAATACTGCTTCGAATGAGGCTTCTGTTAATGGTCAAGTAATAGAAAAAAACACGAGTGAGTTGGTTGTTTTTATGTTTGCCTGGATTTGTATTAACATGCTCATTTATCACTCATTGACTAAACCTTGCTTTTGTTCGTGTTGCACCTCTGATTCAGTGGATCAGAATCATTTCCAGGGAGAAAGTCAAGGGATTAGTAATGACAGCTCTAATTTGGACAGACTATCGCTTGCAGAGGTGAAGTTGAAGGACCTAACATGGACGCTGCAAACGACAAATGGATGTCTTGTAGCTCTTCTTTACAGGTTTTTGATTACAGACTTTATATTTGAAGATTGCAAAGCGGAGAAAGCTTACAGAATGAGGAGAGCTTCCCAGAAAAATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

36.29

Weight (kDa)

9.31

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 82
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 46, 358, 376, 541, 902
AclWI GGATC 1 cut(s) 726
AcyI GRCGYC 2 cut(s) 79, 148
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 5 cut(s) 122, 343, 529, 805, 890
AjnI CCWGG 2 cut(s) 638, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AluBI AGCT 6 cut(s) 166, 182, 765, 851, 911, 929
AluI AGCT 6 cut(s) 166, 182, 765, 851, 911, 929
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 726
ApeKI GCWGC 2 cut(s) 355, 823
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 2 cut(s) 91, 808
AsuHPI GGTGA 4 cut(s) 281, 416, 467, 808
AsuII TTCGAA 1 cut(s) 569
AvaII GGWCC 2 cut(s) 91, 808
BauI CACGAG 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 342, 810
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 119, 368
BciT130I CCWGG 2 cut(s) 640, 734
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 1 cut(s) 94
BisI GCNGC 4 cut(s) 356, 377, 542, 824
BlsI GCNGC 4 cut(s) 357, 378, 543, 825
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 2 cut(s) 640, 734
Bme18I GGWCC 2 cut(s) 91, 808
BmgT120I GGNCC 2 cut(s) 91, 808
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 640, 734
BmsI GCATC 1 cut(s) 448
BoxI GACNNNNGTC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 2 cut(s) 79, 148
BsaJI CCNNGG 2 cut(s) 192, 733
BsaXI ACNNNNNCTCC 4 cut(s) 426, 429, 456, 459
Bse118I RCCGGY 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 2 cut(s) 640, 734
BseDI CCNNGG 2 cut(s) 192, 733
BseGI GGATG 2 cut(s) 319, 845
BseJI GATNNNNATC 1 cut(s) 723
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 3 cut(s) 167, 181, 278
BseRI GAGGAG 2 cut(s) 450, 937
BseXI GCAGC 2 cut(s) 342, 810
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 389
BsiEI CGRYCG 1 cut(s) 389
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 104
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 104
BsmI GAATGC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 569
Bsp143I GATC 4 cut(s) 35, 386, 421, 718
BspACI CCGC 5 cut(s) 46, 358, 376, 541, 902
BspCNI CTCAG 3 cut(s) 168, 180, 277
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 1 cut(s) 726
BspQI GCTCTTC 1 cut(s) 858
BspT104I TTCGAA 1 cut(s) 569
BsrDI GCAATG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 93
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 192, 733
BssMI GATC 4 cut(s) 35, 386, 421, 718
BssNI GRCGYC 2 cut(s) 79, 148
BssSI CACGAG 1 cut(s) 610
BssT1I CCWWGG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 610
Bst2UI CCWGG 2 cut(s) 640, 734
Bst4CI ACNGT 1 cut(s) 118
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 2 cut(s) 79, 148
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 3 cut(s) 381, 546, 789
BstDEI CTNAG 3 cut(s) 167, 176, 264
BstF5I GGATG 2 cut(s) 319, 845
BstFNI CGCG 1 cut(s) 72
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 38, 389, 424, 721
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 4 cut(s) 35, 386, 421, 718
BstMCI CGRYCG 1 cut(s) 389
BstMWI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 908
BstNI CCWGG 2 cut(s) 640, 734
BstNSI RCATGY 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 2 cut(s) 638, 732
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 342, 810
BstV2I GAAGAC 1 cut(s) 178
BtsCI GGATG 2 cut(s) 319, 845
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 720
Cac8I GCNNGC 3 cut(s) 381, 546, 789
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 91, 808
CseI GACGC 2 cut(s) 137, 829
Csp6I GTAC 1 cut(s) 298
CviAII CATG 5 cut(s) 112, 233, 368, 655, 816
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 3 cut(s) 167, 176, 264
DpnI GATC 4 cut(s) 37, 388, 423, 720
DpnII GATC 4 cut(s) 35, 386, 421, 718
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 91, 808
EcoO109I RGGNCCY 1 cut(s) 808
EcoRII CCWGG 2 cut(s) 638, 732
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 5 cut(s) 115, 236, 371, 658, 819
FaiI YATR 8 cut(s) 113, 234, 284, 369, 632, 656, 817, 884
FaqI GGGAC 1 cut(s) 104
FatI CATG 5 cut(s) 111, 232, 367, 654, 815
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 356, 377, 542, 824
FokI GGATG 2 cut(s) 326, 852
Fsp4HI GCNGC 4 cut(s) 356, 377, 542, 824
GlaI GCGC 1 cut(s) 71
GluI GCNGC 4 cut(s) 356, 377, 542, 824
HapII CCGG 1 cut(s) 94
HgaI GACGC 2 cut(s) 137, 829
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 2 cut(s) 79, 148
Hin1II CATG 5 cut(s) 115, 236, 371, 658, 819
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 909
HinfI GANTC 7 cut(s) 23, 364, 394, 497, 529, 710, 724
HpaII CCGG 1 cut(s) 94
HphI GGTGA 4 cut(s) 281, 416, 467, 808
Hpy188I TCNGA 5 cut(s) 40, 170, 304, 709, 723
Hpy188III TCNNGA 1 cut(s) 254
Hpy99I CGWCG 3 cut(s) 81, 84, 153
HpyAV CCTTC 2 cut(s) 13, 799
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4IV ACGT 4 cut(s) 79, 345, 470, 523
HpyCH4V TGCA 8 cut(s) 55, 295, 383, 548, 702, 791, 826, 897
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 908
HpyF3I CTNAG 3 cut(s) 167, 176, 264
HpySE526I ACGT 4 cut(s) 79, 345, 470, 523
Hsp92I GRCGYC 2 cut(s) 79, 148
Hsp92II CATG 5 cut(s) 115, 236, 371, 658, 819
HspAI GCGC 1 cut(s) 70
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 35, 386, 421, 718
LguI GCTCTTC 1 cut(s) 858
Lsp1109I GCAGC 2 cut(s) 342, 810
LweI GCATC 1 cut(s) 448
MaeII ACGT 4 cut(s) 79, 345, 470, 523
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 37, 388, 423, 720
MboI GATC 4 cut(s) 35, 386, 421, 718
MboII GAAGA 3 cut(s) 183, 845, 902
MluCI AATT 5 cut(s) 337, 429, 483, 769, 940
MlyI GAGTC 3 cut(s) 32, 373, 403
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 7 cut(s) 403, 428, 433, 568, 715, 787, 915
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 3 cut(s) 537, 585, 651
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 2 cut(s) 640, 734
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 2 cut(s) 640, 734
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 5 cut(s) 52, 61, 103, 188, 908
NdeII GATC 4 cut(s) 35, 386, 421, 718
NlaIII CATG 5 cut(s) 115, 236, 371, 658, 819
NlaIV GGNNCC 1 cut(s) 92
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 658
NspV TTCGAA 1 cut(s) 569
PciSI GCTCTTC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 2 cut(s) 529, 827
PctI GAATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 4 cut(s) 497, 529, 710, 724
PkrI GCNGC 4 cut(s) 357, 378, 543, 825
Ple19I CGATCG 1 cut(s) 389
PleI GAGTC 3 cut(s) 31, 372, 402
PpsI GAGTC 3 cut(s) 31, 372, 402
PpuMI RGGWCCY 1 cut(s) 808
PshAI GACNNNNGTC 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 808
Psp6I CCWGG 2 cut(s) 638, 732
PspGI CCWGG 2 cut(s) 638, 732
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 91, 808
PspPPI RGGWCCY 1 cut(s) 808
PvuI CGATCG 1 cut(s) 389
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 3 cut(s) 537, 585, 651
SatI GCNGC 4 cut(s) 356, 377, 542, 824
Sau3AI GATC 4 cut(s) 35, 386, 421, 718
Sau96I GGNCC 2 cut(s) 91, 808
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 3 cut(s) 32, 373, 403
ScrFI CCNGG 2 cut(s) 640, 734
SfaNI GCATC 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 569
SinI GGWCC 2 cut(s) 91, 808
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 5 cut(s) 337, 429, 483, 769, 940
SsiI CCGC 5 cut(s) 46, 358, 376, 541, 902
StyD4I CCNGG 2 cut(s) 638, 732
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 118
TaiI ACGT 4 cut(s) 82, 348, 473, 526
TaqI TCGA 1 cut(s) 569
TasI AATT 5 cut(s) 337, 429, 483, 769, 940
TatI WGTACW 1 cut(s) 297
TauI GCSGC 2 cut(s) 379, 544
TfiI GAWTC 4 cut(s) 497, 529, 710, 724
Tru1I TTAA 3 cut(s) 537, 585, 651
Tru9I TTAA 3 cut(s) 537, 585, 651
TscAI CASTG 2 cut(s) 246, 720
TseI GCWGC 2 cut(s) 355, 823
TspDTI ATGAA 3 cut(s) 32, 240, 249
TspRI CASTG 2 cut(s) 246, 720
VpaK11BI GGWCC 2 cut(s) 91, 808
XceI RCATGY 1 cut(s) 658
XmnI GAANNNNTTC 1 cut(s) 728
ZraI GACGTC 1 cut(s) 80
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.