Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

505679 .. 506816

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGCGAACAACAACAATGAAGGAGTCGTTAGATAGATCAGAGTTGCGGAGAATGCAAAGAGAGCAAGAGCGCGAACGACGTCGTATCAGGGACCGGCAGAGACGGCAGTCCATGACGGTTGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCAATCGAATCAAATCAGCAATGAACAACATGAAGCAGTGAGTGATGTTCAAGAAGTTACTCAGGGTGAAAACTTGAGCATACAGTCTTTGCAGTACTCCGAGTGTTTGGATGGCGTGGCTTGTAAAGGTTCTAATTTGAACGTCCAACGGTTGCGGTTGAGTCATGTAAGGCGGCTTGCACGATCAGGGAGTCGTTTAGGGTGTGAGGTTATTGCTGATCACCAAATTGGAGGAGAGGTGGTAGTAAAGGGTGATGCCAATAATACGTCTTGTTTCCAAATTGGAGATTTTGATTCTGGTAGATTGCCAAATGGACTACGTTTGAATCGTGTTAAGCGGCTTGCACGGGCAATAAATACTGCTTCGAATGAGGCTTCTGTTAATGGTCAAGTAATAGGAAAAAATACGATGGATCAGAATCATTCCCAGGGAGAAAGTCAAGGGATTGGTAATGACAGCTCTAATTTGGACAAACTATCGCTTGCAGAGGTGAAGTTGAAGGACCTAACATGGACGGATAAACACCCAGCATGGGCTAATGTTGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

28.66

Weight (kDa)

9.89

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	82
AccII	CGCG	1 cut(s)	72
AciI	CCGC	4 cut(s)	46, 358, 376, 541
AclWI	GGATC	1 cut(s)	624
AcyI	GRCGYC	2 cut(s)	79, 148
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	736
AgsI	TTSAA	5 cut(s)	122, 254, 343, 529, 703
AjnI	CCWGG	1 cut(s)	630
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	3 cut(s)	166, 182, 663
AluI	AGCT	3 cut(s)	166, 182, 663
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	91, 706
AsuHPI	GGTGA	4 cut(s)	281, 416, 467, 706
AsuII	TTCGAA	1 cut(s)	569
AvaII	GGWCC	2 cut(s)	91, 706
BbsI	GAAGAC	1 cut(s)	178
BccI	CCATC	2 cut(s)	308, 607
BceAI	ACGGC	1 cut(s)	119
BciT130I	CCWGG	1 cut(s)	632
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	377, 542
BlsI	GCNGC	2 cut(s)	378, 543
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	2 cut(s)	91, 706
BmgT120I	GGNCC	2 cut(s)	91, 706
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	569
BpuEI	CTTGAG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	621
BsaHI	GRCGYC	2 cut(s)	79, 148
BsaJI	CCNNGG	3 cut(s)	192, 630, 631
BsaXI	ACNNNNNCTCC	4 cut(s)	426, 429, 456, 459
Bsc4I	CCNNNNNNNGG	1 cut(s)	736
Bse118I	RCCGGY	1 cut(s)	93
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	192, 630, 631
BseGI	GGATG	1 cut(s)	319
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	1 cut(s)	736
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	167, 181, 278
BseRI	GAGGAG	1 cut(s)	450
BseYI	CCCAGC	1 cut(s)	730
Bsh1236I	CGCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	736
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	569
Bsp143I	GATC	4 cut(s)	35, 386, 421, 616
BspACI	CCGC	4 cut(s)	46, 358, 376, 541
BspCNI	CTCAG	3 cut(s)	168, 180, 277
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	3 cut(s)	192, 630, 631
BssMI	GATC	4 cut(s)	35, 386, 421, 616
BssNI	GRCGYC	2 cut(s)	79, 148
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	3 cut(s)	118, 288, 354
BstACI	GRCGYC	2 cut(s)	79, 148
BstBI	TTCGAA	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	381, 546, 687
BstDEI	CTNAG	3 cut(s)	167, 176, 264
BstF5I	GGATG	1 cut(s)	319
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	4 cut(s)	38, 389, 424, 619
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	35, 386, 421, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 103, 188
BstNI	CCWGG	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	319
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	3 cut(s)	381, 546, 687
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	93
Cfr13I	GGNCC	2 cut(s)	91, 706
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	5 cut(s)	112, 233, 368, 714, 735
CviJI	RGCY	9 cut(s)	143, 166, 182, 323, 379, 544, 578, 663, 740
CviKI_1	RGCY	9 cut(s)	143, 166, 182, 323, 379, 544, 578, 663, 740
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	167, 176, 264
DpnI	GATC	4 cut(s)	37, 388, 423, 618
DpnII	GATC	4 cut(s)	35, 386, 421, 616
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	91, 706
EcoO109I	RGGNCCY	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	630
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	5 cut(s)	115, 236, 371, 717, 738
FaiI	YATR	6 cut(s)	113, 234, 284, 369, 715, 736
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	5 cut(s)	111, 232, 367, 713, 734
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	377, 542
FokI	GGATG	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	377, 542
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	377, 542
GsaI	CCCAGC	1 cut(s)	734
HapII	CCGG	1 cut(s)	94
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	2 cut(s)	79, 148
Hin1II	CATG	5 cut(s)	115, 236, 371, 717, 738
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	7 cut(s)	23, 211, 364, 394, 497, 529, 622
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	4 cut(s)	281, 416, 467, 706
Hpy188I	TCNGA	4 cut(s)	40, 170, 304, 621
Hpy188III	TCNNGA	1 cut(s)	254
Hpy99I	CGWCG	3 cut(s)	81, 84, 153
HpyAV	CCTTC	2 cut(s)	13, 697
HpyCH4III	ACNGT	3 cut(s)	118, 288, 354
HpyCH4IV	ACGT	4 cut(s)	79, 345, 470, 523
HpyCH4V	TGCA	5 cut(s)	55, 295, 383, 548, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 103, 188
HpyF3I	CTNAG	3 cut(s)	167, 176, 264
HpySE526I	ACGT	4 cut(s)	79, 345, 470, 523
Hsp92I	GRCGYC	2 cut(s)	79, 148
Hsp92II	CATG	5 cut(s)	115, 236, 371, 717, 738
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	35, 386, 421, 616
LpnPI	CCDG	9 cut(s)	73, 107, 125, 251, 375, 486, 617, 644, 744
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	4 cut(s)	79, 345, 470, 523
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	4 cut(s)	37, 388, 423, 618
MboI	GATC	4 cut(s)	35, 386, 421, 616
MboII	GAAGA	1 cut(s)	183
MluCI	AATT	4 cut(s)	337, 429, 483, 667
MlyI	GAGTC	3 cut(s)	32, 373, 403
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	403, 428, 433, 568, 685
MseI	TTAA	3 cut(s)	537, 585, 754
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	632
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 103, 188
NdeII	GATC	4 cut(s)	35, 386, 421, 616
NlaIII	CATG	5 cut(s)	115, 236, 371, 717, 738
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	569
PasI	CCCWGGG	1 cut(s)	631
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	4 cut(s)	211, 497, 529, 622
PkrI	GCNGC	2 cut(s)	378, 543
PleI	GAGTC	3 cut(s)	31, 372, 402
PpsI	GAGTC	3 cut(s)	31, 372, 402
PpuMI	RGGWCCY	1 cut(s)	706
PshAI	GACNNNNGTC	1 cut(s)	106
Psp5II	RGGWCCY	1 cut(s)	706
Psp6I	CCWGG	1 cut(s)	630
PspFI	CCCAGC	1 cut(s)	730
PspGI	CCWGG	1 cut(s)	630
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	91, 706
PspPPI	RGGWCCY	1 cut(s)	706
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	537, 585, 754
SatI	GCNGC	2 cut(s)	377, 542
Sau3AI	GATC	4 cut(s)	35, 386, 421, 616
Sau96I	GGNCC	2 cut(s)	91, 706
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	3 cut(s)	32, 373, 403
ScrFI	CCNGG	1 cut(s)	632
SfaNI	GCATC	1 cut(s)	448
SfuI	TTCGAA	1 cut(s)	569
SinI	GGWCC	2 cut(s)	91, 706
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	4 cut(s)	337, 429, 483, 667
SsiI	CCGC	4 cut(s)	46, 358, 376, 541
StyD4I	CCNGG	1 cut(s)	630
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	118, 288, 354
TaiI	ACGT	4 cut(s)	82, 348, 473, 526
TaqI	TCGA	2 cut(s)	209, 569
TasI	AATT	4 cut(s)	337, 429, 483, 667
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	379, 544
TfiI	GAWTC	4 cut(s)	211, 497, 529, 622
Tru1I	TTAA	3 cut(s)	537, 585, 754
Tru9I	TTAA	3 cut(s)	537, 585, 754
TscAI	CASTG	1 cut(s)	246
TspDTI	ATGAA	3 cut(s)	32, 240, 249
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	2 cut(s)	91, 706
ZraI	GACGTC	1 cut(s)	80
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.