Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Reverse (-)

29115427 .. 29115901

Gene Structure 475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGAGTTGTCGTTGGATAGATCGGAGTTGCGCAGAATGCAGAGAGAGCAAGAGCGGGAACGACGTCGCGTAAGGGACAGGGAGAGGAGGCAGTCTATGACCATTGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAACTTAGACGACTGAGAGCTGAAAATGCTAAAGCAGGGGATTTCCCATCACAGCAAATAAGCAATGAACATGATGCAGCATTATCAGAAGGGAACAGTGACGTCCGGGAAGTTACTCGGCTCGAAAACCCAACCACGGAACGTCTGCAGTACTCCCAATGTAAGTGTGTTTTTGTAACTGCGTTGCCATTTTGCATATTCAAAGTTACTGGCGGTGCAACAGTCATGCTAAAAAATTTGTGGCATTTAAAATGTGTTACAGTCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.62

Weight (kDa)

10.12

Isoelectric Point (pI)

74.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	70, 255
Acc16I	TGCGCA	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	72
AciI	CCGC	2 cut(s)	58, 363
AcsI	RAATTY	1 cut(s)	385
AcyI	GRCGYC	3 cut(s)	67, 136, 252
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	110, 352
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	296
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	257
BsaHI	GRCGYC	3 cut(s)	67, 136, 252
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 29
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	364
Bse3DI	GCAATG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	285
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	20, 103
BseXI	GCAGC	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	58, 363
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	1 cut(s)	23
BssNI	GRCGYC	3 cut(s)	67, 136, 252
Bst4CI	ACNGT	3 cut(s)	248, 373, 412
BstACI	GRCGYC	3 cut(s)	67, 136, 252
BstDEI	CTNAG	2 cut(s)	155, 164
BstDSI	CCRYGG	1 cut(s)	285
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	23
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 49, 176
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	296
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	253
CfoI	GCGC	1 cut(s)	36
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	221, 376
CviJI	RGCY	3 cut(s)	131, 170, 271
CviKI_1	RGCY	3 cut(s)	131, 170, 271
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	155, 164
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DraI	TTTAAA	1 cut(s)	399
FaeI	CATG	2 cut(s)	224, 379
FaiI	YATR	6 cut(s)	101, 222, 347, 377, 416, 418
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	220, 375
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	228
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	3 cut(s)	67, 136, 252
Hin1II	CATG	2 cut(s)	224, 379
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	28, 238
Hpy99I	CGWCG	3 cut(s)	69, 72, 141
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	3 cut(s)	248, 373, 412
HpyCH4IV	ACGT	3 cut(s)	67, 252, 292
HpyCH4V	TGCA	5 cut(s)	43, 227, 298, 345, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 49, 176
HpyF3I	CTNAG	2 cut(s)	155, 164
HpySE526I	ACGT	3 cut(s)	67, 252, 292
Hsp92I	GRCGYC	3 cut(s)	67, 136, 252
Hsp92II	CATG	2 cut(s)	224, 379
HspAI	GCGC	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	67, 113, 171, 269, 345
Lsp1109I	GCAGC	1 cut(s)	239
LweI	GCATC	1 cut(s)	214
MaeII	ACGT	3 cut(s)	67, 252, 292
MaeIII	GTNAC	5 cut(s)	248, 262, 325, 355, 406
MalI	GATC	1 cut(s)	25
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	1 cut(s)	23
MluCI	AATT	1 cut(s)	385
MnlI	CCTC	2 cut(s)	81, 84
MseI	TTAA	1 cut(s)	398
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	40, 49, 176
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	1 cut(s)	23
NlaIII	CATG	2 cut(s)	224, 379
NmeAIII	GCCGAG	2 cut(s)	112, 247
NmuCI	GTSAC	1 cut(s)	248
NsbI	TGCGCA	1 cut(s)	35
PctI	GAATGC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	300
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	398
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	257
SetI	ASST	4 cut(s)	70, 172, 255, 295
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	2 cut(s)	58, 363
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	248, 373, 412
TaiI	ACGT	3 cut(s)	70, 255, 295
TaqI	TCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	385
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	398
Tru9I	TTAA	1 cut(s)	398
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	1 cut(s)	385
ZraI	GACGTC	2 cut(s)	68, 253
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.