Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Reverse (-)

41262666 .. 41265265

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1336000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGGAGTTGTCGTTGGATAGATCGGAGTTGCGCAGAATGCAGAGAGAGCAAGAGCGGGAACGACGGCGCGTAAGGGACAGGGAGAGGAGGCAGTCTATGACCATTGAACAGAGAGAACGACATCTGGCTCGGCGTCGCAGGAACTATCAACTTAGACGACTGAGAGCTGAAAATGCTAAAGCAGGGGATTTCCCGTCACAGCAAATAAGCAACGAACAGGATGCAGCAGGGTCAGAAGGGAACAATGACGTCCGGGAAGTTACTCAGCTCGAAAACCCGACCACGGAACGTCTGCAGTACTCCCAATGTTTGGAGGCTGCAGCTTCTAGATCGTCTAATTTATCAAAACGGTTGCGTTTGAGTCATATAAGGCGGCTTGCGCGGTCGTTGAATCATTTAGGCGTCGAGGTTATTGGTAATCACCAAATTGTAGCGGACGTGATTCCGAAGGGTGATACCAATGCTTCTTGTTTCCGAATTGGCGATTTTGATTCCGGGAGGCTTCCAAATGGACTGCGTTTCAATCGTGTTAAACGTCTTGCACGATCAATAAATTCTTCTACGAATGAGGCTTCTGTTAATGGCCCAAAAGATTCCGTCTGCAGAAGAGATTCGAGCGATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.25

Weight (kDa)

10.77

Isoelectric Point (pI)

78.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
Acc16I	TGCGCA	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	2 cut(s)	72, 385
AciI	CCGC	4 cut(s)	58, 376, 385, 437
AcsI	RAATTY	1 cut(s)	556
AcyI	GRCGYC	3 cut(s)	136, 252, 405
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	286, 313
AgsI	TTSAA	3 cut(s)	110, 394, 526
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	3 cut(s)	170, 271, 326
AluI	AGCT	3 cut(s)	170, 271, 326
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	3 cut(s)	227, 320, 323
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	1 cut(s)	613
AspLEI	GCGC	3 cut(s)	36, 72, 385
AspS9I	GGNCC	1 cut(s)	587
AsuC2I	CCSGG	2 cut(s)	257, 499
AsuHPI	GGTGA	2 cut(s)	416, 467
BbvI	GCAGC	3 cut(s)	239, 307, 335
BceAI	ACGGC	1 cut(s)	83
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BcnI	CCSGG	2 cut(s)	257, 499
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	3 cut(s)	296, 321, 604
BisI	GCNGC	4 cut(s)	228, 321, 324, 377
BlsI	GCNGC	4 cut(s)	229, 322, 325, 378
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	257, 499
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	587
BmrFI	CCNGG	2 cut(s)	257, 499
BmsI	GCATC	1 cut(s)	214
BpuMI	CCSGG	2 cut(s)	257, 499
BsaHI	GRCGYC	3 cut(s)	136, 252, 405
BsaJI	CCNNGG	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 29
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 313
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	286, 313
BseMII	CTCAG	2 cut(s)	155, 281
BseRI	GAGGAG	2 cut(s)	20, 103
BseXI	GCAGC	3 cut(s)	239, 307, 335
Bsh1236I	CGCG	2 cut(s)	72, 385
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	588
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	256, 498
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	2 cut(s)	286, 313
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	588
Bsp143I	GATC	3 cut(s)	23, 332, 548
BspACI	CCGC	4 cut(s)	58, 376, 385, 437
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	156, 280
BspFNI	CGCG	2 cut(s)	72, 385
BspMAI	CTGCAG	3 cut(s)	300, 325, 608
BsrBI	CCGCTC	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	3 cut(s)	23, 332, 548
BssNI	GRCGYC	3 cut(s)	136, 252, 405
Bst4CI	ACNGT	1 cut(s)	354
Bst6I	CTCTTC	1 cut(s)	604
BstACI	GRCGYC	3 cut(s)	136, 252, 405
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	3 cut(s)	155, 164, 267
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	72, 385
BstHHI	GCGC	3 cut(s)	36, 72, 385
BstKTI	GATC	3 cut(s)	26, 335, 551
BstMBI	GATC	3 cut(s)	23, 332, 548
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 49, 176, 382
BstSCI	CCNGG	2 cut(s)	255, 497
BstSFI	CTRYAG	3 cut(s)	296, 321, 604
BstUI	CGCG	2 cut(s)	72, 385
BstV1I	GCAGC	3 cut(s)	239, 307, 335
BsuRI	GGCC	1 cut(s)	588
BtgI	CCRYGG	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	381
CfoI	GCGC	3 cut(s)	36, 72, 385
Cfr13I	GGNCC	1 cut(s)	587
CseI	GACGC	2 cut(s)	125, 394
Csp6I	GTAC	1 cut(s)	301
CviJI	RGCY	9 cut(s)	131, 170, 271, 320, 326, 379, 505, 575, 588
CviKI_1	RGCY	9 cut(s)	131, 170, 271, 320, 326, 379, 505, 575, 588
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	155, 164, 267
DpnI	GATC	3 cut(s)	25, 334, 550
DpnII	GATC	3 cut(s)	23, 332, 548
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
FaiI	YATR	3 cut(s)	101, 369, 371
FaqI	GGGAC	1 cut(s)	92
FauI	CCCGC	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	228, 321, 324, 377
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	228, 321, 324, 377
FspBI	CTAG	1 cut(s)	330
FspI	TGCGCA	1 cut(s)	35
GlaI	GCGC	3 cut(s)	35, 71, 384
GluI	GCNGC	4 cut(s)	228, 321, 324, 377
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	2 cut(s)	256, 498
HgaI	GACGC	2 cut(s)	125, 394
HhaI	GCGC	3 cut(s)	36, 72, 385
Hin1I	GRCGYC	3 cut(s)	136, 252, 405
Hin6I	GCGC	3 cut(s)	34, 70, 383
HinP1I	GCGC	3 cut(s)	34, 70, 383
HinfI	GANTC	6 cut(s)	364, 394, 445, 494, 596, 614
HpaII	CCGG	2 cut(s)	256, 498
HphI	GGTGA	2 cut(s)	416, 467
Hpy188I	TCNGA	4 cut(s)	28, 238, 450, 479
Hpy188III	TCNNGA	1 cut(s)	330
Hpy99I	CGWCG	3 cut(s)	69, 141, 410
HpyAV	CCTTC	2 cut(s)	233, 445
HpyCH4III	ACNGT	1 cut(s)	354
HpyCH4IV	ACGT	4 cut(s)	252, 292, 441, 538
HpyCH4V	TGCA	6 cut(s)	43, 227, 298, 323, 545, 606
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 49, 176, 382
HpyF3I	CTNAG	3 cut(s)	155, 164, 267
HpySE526I	ACGT	4 cut(s)	252, 292, 441, 538
Hsp92I	GRCGYC	3 cut(s)	136, 252, 405
HspAI	GCGC	3 cut(s)	34, 70, 383
Kzo9I	GATC	3 cut(s)	23, 332, 548
LpnPI	CCDG	8 cut(s)	67, 113, 127, 171, 206, 216, 269, 511
Lsp1109I	GCAGC	3 cut(s)	239, 307, 335
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	4 cut(s)	252, 292, 441, 538
MaeIII	GTNAC	2 cut(s)	198, 262
MalI	GATC	3 cut(s)	25, 334, 550
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	23, 332, 548
MboII	GAAGA	2 cut(s)	552, 621
MluCI	AATT	4 cut(s)	340, 429, 480, 556
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	6 cut(s)	81, 84, 310, 403, 495, 565
MroXI	GAANNNNTTC	1 cut(s)	613
MseI	TTAA	2 cut(s)	534, 582
MspI	CCGG	2 cut(s)	256, 498
MspR9I	CCNGG	2 cut(s)	257, 499
Mva1269I	GAATGC	1 cut(s)	45
MvnI	CGCG	2 cut(s)	72, 385
MwoI	GCNNNNNNNGC	4 cut(s)	40, 49, 176, 382
NciI	CCSGG	2 cut(s)	257, 499
NdeII	GATC	3 cut(s)	23, 332, 548
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	198
NsbI	TGCGCA	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	535, 544
PctI	GAATGC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	613
PfeI	GAWTC	5 cut(s)	394, 445, 494, 596, 614
PflMI	CCANNNNNTGG	1 cut(s)	313
PfoI	TCCNGGA	2 cut(s)	255, 497
PkrI	GCNGC	4 cut(s)	229, 322, 325, 378
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PspPI	GGNCC	1 cut(s)	587
PstI	CTGCAG	3 cut(s)	300, 325, 608
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	534, 582
SatI	GCNGC	4 cut(s)	228, 321, 324, 377
Sau3AI	GATC	3 cut(s)	23, 332, 548
Sau96I	GGNCC	1 cut(s)	587
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	257, 499
SetI	ASST	8 cut(s)	172, 255, 273, 295, 328, 414, 444, 541
SfaNI	GCATC	1 cut(s)	214
SfcI	CTRYAG	3 cut(s)	296, 321, 604
Sse9I	AATT	4 cut(s)	340, 429, 480, 556
SsiI	CCGC	4 cut(s)	58, 376, 385, 437
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	255, 497
TaaI	ACNGT	1 cut(s)	354
TaiI	ACGT	4 cut(s)	255, 295, 444, 541
TaqI	TCGA	3 cut(s)	273, 408, 617
TasI	AATT	4 cut(s)	340, 429, 480, 556
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	379
TfiI	GAWTC	5 cut(s)	394, 445, 494, 596, 614
Tru1I	TTAA	2 cut(s)	534, 582
Tru9I	TTAA	2 cut(s)	534, 582
TseFI	GTSAC	1 cut(s)	198
TseI	GCWGC	3 cut(s)	227, 320, 323
Tsp45I	GTSAC	1 cut(s)	198
TspGWI	ACGGA	2 cut(s)	302, 589
Van91I	CCANNNNNTGG	1 cut(s)	313
XapI	RAATTY	1 cut(s)	556
XbaI	TCTAGA	1 cut(s)	329
XmnI	GAANNNNTTC	1 cut(s)	613
XspI	CTAG	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.