Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Reverse (-)

31906377 .. 31907548

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCATGATAAAAGCAAATGCATGAATTGCTGCTTTCTGAATTCTGATCACGATGAAACTCCAGATAGGTCGGAGTTGCGCGGAATGCAAAGAGAGCAAGAGCGAGAACTACGTCGCGTAAGGGACAGGCAGAGGAGGCAGTCTATGACCGTTGAGCAGAGAGAACGGCATCTGGCACGCTGTCGTAGGAACTATCAACTTCGACGACTAAGAGTTGAAAATGCTAAAGCAGGGGATTTCCCATCACATGTACAGCAAATAAGCAATGAACGTGAAGCGGCAGCATCAGGAGGGAACAATGACGTTTGGGAAGTTACTCAGCTCGAAAAAACAACCGCGGAACGTCTGCAGCACTCCGAATGTTTGGAGGCTGTAGCTTCTAAATCGGCTAATTTCCCAAAGCGGTTGCGTTTGAGTCATATAAGGCGGCTTGCGCGTTGGTTGAATAATTTAGATGGCGAGGTTATTGGTAATCACCAAATCGTAGCACAGGTGATTCCAAAGGGTGATGCTAGTAATTCTTCTTGTAAGCTTGATAGTGTTAAATGTTTCCGAATTGGAGATTTTGGATCTGGGAAGCTTCCAAATGGACTGCGTTTCAGTCGTGTTAAACGTCTTGCGCGGTCAATAAATACTTCTACAAATGAGGCTTCTGTTAATGGCCCGAAAGGTACTAAAGAAAAAGTAGATGAAAGTCAGTCATTCATTTTTAGTAGCCTAATGCATGTTAGGAACACGCAACGTTTGCTTTGTCCATGTACTTGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

29.4

Weight (kDa)

9.71

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	81, 117, 338, 436, 622
AciI	CCGC	7 cut(s)	81, 278, 336, 338, 403, 427, 622
AclI	AACGTT	1 cut(s)	742
AclWI	GGATC	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	40
AfaI	GTAC	3 cut(s)	252, 673, 760
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	2 cut(s)	218, 445
AluBI	AGCT	4 cut(s)	322, 377, 532, 580
AluI	AGCT	4 cut(s)	322, 377, 532, 580
AlwI	GGATC	1 cut(s)	577
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	3 cut(s)	30, 281, 349
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	3 cut(s)	81, 436, 622
AspS9I	GGNCC	1 cut(s)	662
AsuHPI	GGTGA	3 cut(s)	467, 505, 518
BbvI	GCAGC	3 cut(s)	17, 293, 361
BccI	CCATC	2 cut(s)	250, 449
BceAI	ACGGC	1 cut(s)	182
BclI	TGATCA	1 cut(s)	46
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	347, 372
BisI	GCNGC	5 cut(s)	31, 279, 282, 350, 428
BlsI	GCNGC	5 cut(s)	32, 280, 283, 351, 429
BmgT120I	GGNCC	1 cut(s)	662
BmsI	GCATC	3 cut(s)	178, 293, 499
BpmI	CTGGAG	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	336
Bse3DI	GCAATG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	17, 293, 361
Bsh1236I	CGCG	5 cut(s)	81, 117, 338, 436, 622
BshFI	GGCC	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	663
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	46, 569
BspACI	CCGC	7 cut(s)	81, 278, 336, 338, 403, 427, 622
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	5 cut(s)	81, 117, 338, 436, 622
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	336
BssMI	GATC	2 cut(s)	46, 569
Bst4CI	ACNGT	1 cut(s)	151
BstAPI	GCANNNNNTGC	2 cut(s)	27, 745
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	178, 432
BstDEI	CTNAG	2 cut(s)	209, 318
BstDSI	CCRYGG	1 cut(s)	336
BstFNI	CGCG	5 cut(s)	81, 117, 338, 436, 622
BstHHI	GCGC	3 cut(s)	81, 436, 622
BstKTI	GATC	2 cut(s)	49, 572
BstMBI	GATC	2 cut(s)	46, 569
BstMWI	GCNNNNNNNGC	6 cut(s)	27, 85, 94, 136, 433, 745
BstNSI	RCATGY	2 cut(s)	251, 728
BstSFI	CTRYAG	2 cut(s)	347, 372
BstUI	CGCG	5 cut(s)	81, 117, 338, 436, 622
BstV1I	GCAGC	3 cut(s)	17, 293, 361
BstX2I	RGATCY	1 cut(s)	569
BstYI	RGATCY	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	663
BtgI	CCRYGG	1 cut(s)	336
Cac8I	GCNNGC	2 cut(s)	178, 432
CfoI	GCGC	3 cut(s)	81, 436, 622
Cfr13I	GGNCC	1 cut(s)	662
Cfr42I	CCGCGG	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	251, 672, 759
CviAII	CATG	5 cut(s)	5, 22, 248, 725, 756
CviQI	GTAC	3 cut(s)	251, 672, 759
DdeI	CTNAG	2 cut(s)	209, 318
DpnI	GATC	2 cut(s)	48, 571
DpnII	GATC	2 cut(s)	46, 569
EcoRI	GAATTC	1 cut(s)	40
EcoT22I	ATGCAT	3 cut(s)	6, 23, 726
FaeI	CATG	5 cut(s)	8, 25, 251, 728, 759
FaiI	YATR	8 cut(s)	6, 23, 146, 249, 420, 422, 726, 757
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	5 cut(s)	4, 21, 247, 724, 755
FbaI	TGATCA	1 cut(s)	46
Fnu4HI	GCNGC	5 cut(s)	31, 279, 282, 350, 428
Fsp4HI	GCNGC	5 cut(s)	31, 279, 282, 350, 428
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	3 cut(s)	80, 435, 621
GluI	GCNGC	5 cut(s)	31, 279, 282, 350, 428
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	663
HhaI	GCGC	3 cut(s)	81, 436, 622
Hin1II	CATG	5 cut(s)	8, 25, 251, 728, 759
Hin6I	GCGC	3 cut(s)	79, 434, 620
HinP1I	GCGC	3 cut(s)	79, 434, 620
HindIII	AAGCTT	2 cut(s)	530, 578
HinfI	GANTC	2 cut(s)	415, 496
HphI	GGTGA	3 cut(s)	467, 505, 518
Hpy188I	TCNGA	5 cut(s)	39, 46, 73, 358, 554
Hpy188III	TCNNGA	3 cut(s)	50, 62, 288
Hpy99I	CGWCG	2 cut(s)	117, 207
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	6 cut(s)	112, 271, 303, 343, 613, 742
HpyCH4V	TGCA	5 cut(s)	4, 21, 88, 349, 724
HpyF10VI	GCNNNNNNNGC	6 cut(s)	27, 85, 94, 136, 433, 745
HpyF3I	CTNAG	2 cut(s)	209, 318
HpySE526I	ACGT	6 cut(s)	112, 271, 303, 343, 613, 742
Hsp92II	CATG	5 cut(s)	8, 25, 251, 728, 759
HspAI	GCGC	3 cut(s)	79, 434, 620
Ksp22I	TGATCA	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	46, 569
LpnPI	CCDG	7 cut(s)	75, 112, 158, 216, 273, 476, 558
Lsp1109I	GCAGC	3 cut(s)	17, 293, 361
LweI	GCATC	3 cut(s)	178, 293, 499
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	6 cut(s)	112, 271, 303, 343, 613, 742
MaeIII	GTNAC	2 cut(s)	313, 764
MalI	GATC	2 cut(s)	48, 571
MboI	GATC	2 cut(s)	46, 569
MboII	GAAGA	1 cut(s)	513
MflI	RGATCY	1 cut(s)	569
MluCI	AATT	6 cut(s)	25, 40, 391, 448, 517, 555
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	6 cut(s)	126, 129, 284, 361, 454, 640
Mph1103I	ATGCAT	3 cut(s)	6, 23, 726
MseI	TTAA	3 cut(s)	543, 609, 657
MspA1I	CMGCKG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	90
MvnI	CGCG	5 cut(s)	81, 117, 338, 436, 622
MwoI	GCNNNNNNNGC	6 cut(s)	27, 85, 94, 136, 433, 745
NdeII	GATC	2 cut(s)	46, 569
NlaIII	CATG	5 cut(s)	8, 25, 251, 728, 759
NsiI	ATGCAT	3 cut(s)	6, 23, 726
NspI	RCATGY	2 cut(s)	251, 728
PciI	ACATGT	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PctI	GAATGC	1 cut(s)	90
PfeI	GAWTC	1 cut(s)	496
PkrI	GCNGC	5 cut(s)	32, 280, 283, 351, 429
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	247
Psp1406I	AACGTT	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	662
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	569
RsaI	GTAC	3 cut(s)	252, 673, 760
RsaNI	GTAC	3 cut(s)	251, 672, 759
SacII	CCGCGG	1 cut(s)	339
SaqAI	TTAA	3 cut(s)	543, 609, 657
SatI	GCNGC	5 cut(s)	31, 279, 282, 350, 428
Sau3AI	GATC	2 cut(s)	46, 569
Sau96I	GGNCC	1 cut(s)	662
SchI	GAGTC	1 cut(s)	424
SfaNI	GCATC	3 cut(s)	178, 293, 499
SfcI	CTRYAG	2 cut(s)	347, 372
Sfr303I	CCGCGG	1 cut(s)	339
SgrBI	CCGCGG	1 cut(s)	339
Sse9I	AATT	6 cut(s)	25, 40, 391, 448, 517, 555
SsiI	CCGC	7 cut(s)	81, 278, 336, 338, 403, 427, 622
SspMI	CTAG	1 cut(s)	513
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	6 cut(s)	115, 274, 306, 346, 616, 745
TaqI	TCGA	2 cut(s)	202, 324
TasI	AATT	6 cut(s)	25, 40, 391, 448, 517, 555
TatI	WGTACW	2 cut(s)	250, 758
TauI	GCSGC	2 cut(s)	281, 430
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	543, 609, 657
Tru9I	TTAA	3 cut(s)	543, 609, 657
TseI	GCWGC	3 cut(s)	30, 281, 349
TspDTI	ATGAA	5 cut(s)	38, 69, 282, 694, 705
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	2 cut(s)	251, 728
XspI	CTAG	1 cut(s)	513
Zsp2I	ATGCAT	3 cut(s)	6, 23, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.