Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

398840 .. 401158

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGGAGTCGTTAGATAGATCAGAGTTGCGCAGAATGCAAAGGGAGCAAGAGCGGGAACGACGCCGTATAAGGGACAGGCAAAGAAGGCAGTCTATGACCGTTGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAACTTAGACGACTGAGAGCTGAGAATGCTAAAGTTGATTGCCAATCTCAGCAAATAAGCAACGAGCATGAAGAAGCAGCAGCAGCAGGAGGGAATGAAGGGAATGATGACCAAGAAGTAACTCAGACTGAAAAGCTAAGCGCCGAACGTCTGCAATACTCTGAGTGCTTGGAAGCTGCAGCTTGTAAATCGGCTAATTTCACCAAACGGTTGCGTTTGAGTCATATACGGCGGCTTGCACGATCCTTGAATCATTTAGGGGGTGAAGCTATTGGTAACCACCAAATTGTAGCAGACGTGATTACAAAGGGTGATGCTAATAATACTTCTTGTTTCCGAATTGGAGATTTTGATTCTGGTAGGCTGCCACATGGACTACGATTGAATCGTGTTAAACGTCTTGCACGGACATTAAATATTGCTGCTCATGAGACTTCTGTGAACTGCCCAAAAGGTTCTAAAGAAAAATGTGCATTGGACCAGAATGTGTCTGCGGAAGAGGTTCCAGTGACCGGTGATGATAAGCCTAAATTTGGACAAACTATCAGGGTTGGAGGAGATGTTGAAGGACCCAACATGGATGGTAATAATCAGCTGCAATTTCCATATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

28.83

Weight (kDa)

9.47

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	3 cut(s)	55, 379, 641
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	677
AcyI	GRCGYC	2 cut(s)	64, 133
AfiI	CCNNNNNNNGG	3 cut(s)	73, 659, 680
AgeI	ACCGGT	1 cut(s)	659
AgsI	TTSAA	4 cut(s)	107, 397, 532, 713
AjiI	CACGTC	1 cut(s)	445
AluBI	AGCT	6 cut(s)	167, 283, 323, 329, 416, 742
AluI	AGCT	6 cut(s)	167, 283, 323, 329, 416, 742
Alw26I	GTCTC	1 cut(s)	572
AlwI	GGATC	1 cut(s)	384
ApeKI	GCWGC	8 cut(s)	224, 227, 230, 323, 326, 511, 569, 742
ApoI	RAATTY	1 cut(s)	677
AsiGI	ACCGGT	1 cut(s)	659
Asp700I	GAANNNNTTC	1 cut(s)	648
AspLEI	GCGC	2 cut(s)	33, 290
AspS9I	GGNCC	2 cut(s)	625, 716
AsuHPI	GGTGA	4 cut(s)	340, 422, 470, 674
AvaII	GGWCC	2 cut(s)	625, 716
BbvI	GCAGC	8 cut(s)	236, 239, 242, 310, 338, 498, 556, 729
BccI	CCATC	1 cut(s)	722
BceAI	ACGGC	2 cut(s)	51, 392
BcoDI	GTCTC	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	291
BisI	GCNGC	9 cut(s)	225, 228, 231, 324, 327, 380, 512, 570, 743
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	9 cut(s)	226, 229, 232, 325, 328, 381, 513, 571, 744
Bme18I	GGWCC	2 cut(s)	625, 716
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	625, 716
BmiI	GGNNCC	2 cut(s)	651, 718
BmsI	GCATC	1 cut(s)	451
Bpu1102I	GCTNAGC	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	64, 133
BsaWI	WCCGGW	1 cut(s)	659
BsaXI	ACNNNNNCTCC	2 cut(s)	693, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 659, 680
Bse118I	RCCGGY	1 cut(s)	659
Bse1I	ACTGG	1 cut(s)	653
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	73, 659, 680
BseMII	CTCAG	5 cut(s)	152, 159, 209, 284, 300
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	8 cut(s)	236, 239, 242, 310, 338, 498, 556, 729
BshTI	ACCGGT	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	73, 659, 680
BsmAI	GTCTC	1 cut(s)	572
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	2 cut(s)	42, 178
Bsp143I	GATC	2 cut(s)	20, 389
Bsp1720I	GCTNAGC	1 cut(s)	284
BspACI	CCGC	3 cut(s)	55, 379, 641
BspCNI	CTCAG	5 cut(s)	153, 160, 208, 283, 301
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	651, 718
BspMAI	CTGCAG	1 cut(s)	328
BspPI	GGATC	1 cut(s)	384
BsrBI	CCGCTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	659
BssMI	GATC	2 cut(s)	20, 389
BssNI	GRCGYC	2 cut(s)	64, 133
Bst4CI	ACNGT	2 cut(s)	103, 357
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	2 cut(s)	64, 133
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	7 cut(s)	152, 161, 168, 195, 270, 284, 309
BstEII	GGTNACC	1 cut(s)	422
BstF5I	GGATG	1 cut(s)	733
BstH2I	RGCGCY	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	33, 290
BstKTI	GATC	2 cut(s)	23, 392
BstMAI	GTCTC	1 cut(s)	572
BstMBI	GATC	2 cut(s)	20, 389
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 230
BstPI	GGTNACC	1 cut(s)	422
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	8 cut(s)	236, 239, 242, 310, 338, 498, 556, 729
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	1 cut(s)	574
CfoI	GCGC	2 cut(s)	33, 290
Cfr10I	RCCGGY	1 cut(s)	659
Cfr13I	GGNCC	2 cut(s)	625, 716
CseI	GACGC	2 cut(s)	72, 122
CspAI	ACCGGT	1 cut(s)	659
CviAII	CATG	4 cut(s)	215, 518, 575, 724
DdeI	CTNAG	7 cut(s)	152, 161, 168, 195, 270, 284, 309
DpnI	GATC	2 cut(s)	22, 391
DpnII	GATC	2 cut(s)	20, 389
Eam1104I	CTCTTC	1 cut(s)	639
EarI	CTCTTC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	625, 716
Eco91I	GGTNACC	1 cut(s)	422
EcoO109I	RGGNCCY	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	422
FaeI	CATG	4 cut(s)	218, 521, 578, 727
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	214, 517, 574, 723
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	9 cut(s)	225, 228, 231, 324, 327, 380, 512, 570, 743
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	9 cut(s)	225, 228, 231, 324, 327, 380, 512, 570, 743
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	2 cut(s)	32, 289
GluI	GCNGC	9 cut(s)	225, 228, 231, 324, 327, 380, 512, 570, 743
HaeII	RGCGCY	1 cut(s)	291
HapII	CCGG	1 cut(s)	660
HgaI	GACGC	2 cut(s)	72, 122
HhaI	GCGC	2 cut(s)	33, 290
Hin1I	GRCGYC	2 cut(s)	64, 133
Hin1II	CATG	4 cut(s)	218, 521, 578, 727
Hin6I	GCGC	2 cut(s)	31, 288
HinP1I	GCGC	2 cut(s)	31, 288
HinfI	GANTC	5 cut(s)	8, 367, 397, 500, 532
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	4 cut(s)	340, 422, 470, 674
Hpy166II	GTNNAC	1 cut(s)	589
Hpy188I	TCNGA	4 cut(s)	25, 273, 310, 485
Hpy188III	TCNNGA	1 cut(s)	575
Hpy8I	GTNNAC	1 cut(s)	589
Hpy99I	CGWCG	2 cut(s)	66, 138
HpyAV	CCTTC	3 cut(s)	81, 239, 707
HpyCH4III	ACNGT	2 cut(s)	103, 357
HpyCH4IV	ACGT	3 cut(s)	295, 444, 544
HpyCH4V	TGCA	7 cut(s)	40, 301, 326, 386, 551, 620, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 230
HpyF3I	CTNAG	7 cut(s)	152, 161, 168, 195, 270, 284, 309
HpySE526I	ACGT	3 cut(s)	295, 444, 544
Hsp92I	GRCGYC	2 cut(s)	64, 133
Hsp92II	CATG	4 cut(s)	218, 521, 578, 727
HspAI	GCGC	2 cut(s)	31, 288
Kzo9I	GATC	2 cut(s)	20, 389
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	8 cut(s)	64, 110, 219, 489, 641, 666, 673, 679
Lsp1109I	GCAGC	8 cut(s)	236, 239, 242, 310, 338, 498, 556, 729
LweI	GCATC	1 cut(s)	451
MaeII	ACGT	3 cut(s)	295, 444, 544
MaeIII	GTNAC	3 cut(s)	265, 422, 655
MalI	GATC	2 cut(s)	22, 391
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	20, 389
MboII	GAAGA	2 cut(s)	230, 656
MluCI	AATT	5 cut(s)	343, 432, 486, 677, 746
MlyI	GAGTC	2 cut(s)	17, 376
MmeI	TCCRAC	1 cut(s)	679
MnlI	CCTC	3 cut(s)	230, 640, 695
MroXI	GAANNNNTTC	1 cut(s)	648
MseI	TTAA	3 cut(s)	540, 560, 760
MspA1I	CMGCKG	1 cut(s)	742
MspI	CCGG	1 cut(s)	660
Mva1269I	GAATGC	2 cut(s)	42, 178
MwoI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 230
NdeII	GATC	2 cut(s)	20, 389
NlaIII	CATG	4 cut(s)	218, 521, 578, 727
NlaIV	GGNNCC	2 cut(s)	651, 718
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	655
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	2 cut(s)	532, 541
PctI	GAATGC	2 cut(s)	42, 178
PdmI	GAANNNNTTC	1 cut(s)	648
PfeI	GAWTC	3 cut(s)	397, 500, 532
PinAI	ACCGGT	1 cut(s)	659
PkrI	GCNGC	9 cut(s)	226, 229, 232, 325, 328, 381, 513, 571, 744
PleI	GAGTC	2 cut(s)	16, 375
PpsI	GAGTC	2 cut(s)	16, 375
PpuMI	RGGWCCY	1 cut(s)	716
Psp5II	RGGWCCY	1 cut(s)	716
PspEI	GGTNACC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	651, 718
PspPI	GGNCC	2 cut(s)	625, 716
PspPPI	RGGWCCY	1 cut(s)	716
PstI	CTGCAG	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	540, 560, 760
SatI	GCNGC	9 cut(s)	225, 228, 231, 324, 327, 380, 512, 570, 743
Sau3AI	GATC	2 cut(s)	20, 389
Sau96I	GGNCC	2 cut(s)	625, 716
SchI	GAGTC	2 cut(s)	17, 376
SfaNI	GCATC	1 cut(s)	451
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	625, 716
Sse9I	AATT	5 cut(s)	343, 432, 486, 677, 746
SsiI	CCGC	3 cut(s)	55, 379, 641
SspI	AATATT	1 cut(s)	565
TaaI	ACNGT	2 cut(s)	103, 357
TaiI	ACGT	3 cut(s)	298, 447, 547
TasI	AATT	5 cut(s)	343, 432, 486, 677, 746
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	3 cut(s)	397, 500, 532
Tru1I	TTAA	3 cut(s)	540, 560, 760
Tru9I	TTAA	3 cut(s)	540, 560, 760
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	8 cut(s)	224, 227, 230, 323, 326, 511, 569, 742
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	3 cut(s)	17, 231, 258
TspGWI	ACGGA	1 cut(s)	568
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	625, 716
XapI	RAATTY	1 cut(s)	677
XmnI	GAANNNNTTC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.