Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

508173 .. 510282

Gene Structure 2110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG008000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAGGAATCGTTAGATAGATCAGAGTTGCGGAGAATGCAAAGAGAGCAAGAGCGCGAACGACGTCGTATTCGGGACCGGCAGAGAAGGCAGTCCATGACGGTCGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCAATCTAATCAGATCAGCAATGAACAACATGAAGCAGTGAGTGATGTTCAAGAAGTTACTCAGGGTGAAAACTTGAGCATACAGTCTTTGCAGTACTCCGAGTGTTTGGATGGCGTGGCTTGTAAAGGTTCTAATTTGAACGTCCAACGGTTGCGGTTGAGTCATGTAAGGAGGCTTGCACGATCGGGGAGTCGTTTAGGGTGTGAGGTTATTGCTGATCACCAAATTGGAGGAGAGGTGGTAGCAAAGGGTGATGCAAATAATACGTCTTGTTTCCAAATTGGAGATTTTGATTCTGGTAGATTGCCAAATGGACTACGTTTGAATCGTGTTAAGCGGCTTGCACGGGCAATAAATACTGCTTCGAATGAGGCTTCTGTTAATGGTCAAGTAATAGAAAACAACACGATGGATCAGAATCATTCCCAGGGAGAAAGTCAAGGGATTAGTAATGACAGCTCTAATTTGGACAAACTATCGCTTGCAGAGGTGAAGTTGAAGGACCTAACATGGACGACTTGTAAGTCAGAAGCCATTCATCATCTTTTGCTTCCATACATAAAAGAAAAGGGATTGACACTGTCTATTAAGTTATGGGAGGGGCCATCAAGAATGCTGGCTGCTGACATTGATCATCAGCACATGGAGGCATTATGTGTTGTGAGGCGAGGAACTTGTGAGAACTTGGAGGATTCCGTATTGCAAAGCGGAGAAAGCTTACAGAATGAGCAGAGCTTCCCAGAAAAATTGCTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.92

Weight (kDa)

8.69

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	712
AatII	GACGTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	57
AciI	CCGC	4 cut(s)	31, 343, 526, 897
AclWI	GGATC	1 cut(s)	609
AcyI	GRCGYC	2 cut(s)	64, 133
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	4 cut(s)	239, 328, 514, 688
AjnI	CCWGG	1 cut(s)	615
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	5 cut(s)	151, 167, 648, 906, 924
AluI	AGCT	5 cut(s)	151, 167, 648, 906, 924
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	1 cut(s)	791
ApeKI	GCWGC	1 cut(s)	809
ArsI	GACNNNNNNTTYG	4 cut(s)	54, 86, 440, 472
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	76, 691, 791
AsuHPI	GGTGA	4 cut(s)	266, 401, 452, 691
AsuII	TTCGAA	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	76, 691
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	3 cut(s)	293, 592, 802
BciT130I	CCWGG	1 cut(s)	617
BclI	TGATCA	2 cut(s)	406, 820
BisI	GCNGC	2 cut(s)	527, 810
BlsI	GCNGC	2 cut(s)	528, 811
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	76, 691
BmgT120I	GGNCC	3 cut(s)	76, 691, 791
BmiI	GGNNCC	2 cut(s)	77, 792
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	64, 133
BsaJI	CCNNGG	3 cut(s)	177, 615, 616
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 414, 441, 444
Bse118I	RCCGGY	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	177, 615, 616
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	606
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	152, 166, 263
BseRI	GAGGAG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	796
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	2 cut(s)	105, 374
BshFI	GGCC	1 cut(s)	793
BsiEI	CGRYCG	2 cut(s)	105, 374
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	2 cut(s)	42, 807
BsnI	GGCC	1 cut(s)	793
Bsp119I	TTCGAA	1 cut(s)	554
Bsp143I	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
BspACI	CCGC	4 cut(s)	31, 343, 526, 897
BspANI	GGCC	1 cut(s)	793
BspCNI	CTCAG	3 cut(s)	153, 165, 262
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	2 cut(s)	77, 792
BspPI	GGATC	1 cut(s)	609
BspT104I	TTCGAA	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	177, 615, 616
BssMI	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
BssNI	GRCGYC	2 cut(s)	64, 133
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	4 cut(s)	103, 273, 339, 771
BstACI	GRCGYC	2 cut(s)	64, 133
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	366, 531, 672, 807
BstDEI	CTNAG	3 cut(s)	152, 161, 249
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	7 cut(s)	23, 204, 374, 409, 604, 823, 945
BstMBI	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
BstMCI	CGRYCG	2 cut(s)	105, 374
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 903
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	796
BstV2I	GAAGAC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	231, 767
Cac8I	GCNNGC	4 cut(s)	366, 531, 672, 807
CfoI	GCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	3 cut(s)	76, 691, 791
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	5 cut(s)	97, 218, 353, 699, 832
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	152, 161, 249
DpnI	GATC	7 cut(s)	22, 203, 373, 408, 603, 822, 944
DpnII	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
DrdI	GACNNNNNNGTC	1 cut(s)	712
DseDI	GACNNNNNNGTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	76, 691
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	5 cut(s)	100, 221, 356, 702, 835
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	96, 217, 352, 698, 831
FbaI	TGATCA	2 cut(s)	406, 820
Fnu4HI	GCNGC	2 cut(s)	527, 810
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	527, 810
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	527, 810
HaeIII	GGCC	1 cut(s)	793
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	2 cut(s)	64, 133
Hin1II	CATG	5 cut(s)	100, 221, 356, 702, 835
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	1 cut(s)	904
HinfI	GANTC	7 cut(s)	8, 349, 379, 482, 514, 607, 881
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	4 cut(s)	266, 401, 452, 691
Hpy188I	TCNGA	7 cut(s)	25, 155, 201, 289, 606, 718, 947
Hpy188III	TCNNGA	3 cut(s)	74, 239, 798
Hpy99I	CGWCG	3 cut(s)	66, 69, 138
HpyAV	CCTTC	2 cut(s)	81, 682
HpyCH4III	ACNGT	4 cut(s)	103, 273, 339, 771
HpyCH4IV	ACGT	4 cut(s)	64, 330, 455, 508
HpyCH4V	TGCA	7 cut(s)	40, 280, 368, 446, 533, 674, 892
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 903
HpyF3I	CTNAG	3 cut(s)	152, 161, 249
HpySE526I	ACGT	4 cut(s)	64, 330, 455, 508
Hsp92I	GRCGYC	2 cut(s)	64, 133
Hsp92II	CATG	5 cut(s)	100, 221, 356, 702, 835
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	406, 820
Kzo9I	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
LpnPI	CCDG	8 cut(s)	92, 110, 236, 471, 602, 629, 791, 942
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	4 cut(s)	64, 330, 455, 508
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	7 cut(s)	22, 203, 373, 408, 603, 822, 944
MboI	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	5 cut(s)	322, 414, 468, 652, 935
MlyI	GAGTC	2 cut(s)	358, 388
MmeI	TCCRAC	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	522, 570, 777
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	2 cut(s)	42, 807
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 903
NdeII	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
NlaIII	CATG	5 cut(s)	100, 221, 356, 702, 835
NlaIV	GGNNCC	2 cut(s)	77, 792
NmeAIII	GCCGAG	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	554
PasI	CCCWGGG	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PctI	GAATGC	2 cut(s)	42, 807
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	5 cut(s)	8, 482, 514, 607, 881
PflFI	GACNNNGTC	1 cut(s)	769
PkrI	GCNGC	2 cut(s)	528, 811
Ple19I	CGATCG	1 cut(s)	374
PleI	GAGTC	2 cut(s)	357, 387
PpsI	GAGTC	2 cut(s)	357, 387
PpuMI	RGGWCCY	1 cut(s)	691
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	615
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	77, 792
PspPI	GGNCC	3 cut(s)	76, 691, 791
PspPPI	RGGWCCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	769
PvuI	CGATCG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	3 cut(s)	522, 570, 777
SatI	GCNGC	2 cut(s)	527, 810
Sau3AI	GATC	7 cut(s)	20, 201, 371, 406, 601, 820, 942
Sau96I	GGNCC	3 cut(s)	76, 691, 791
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	2 cut(s)	358, 388
ScrFI	CCNGG	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	2 cut(s)	76, 691
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	5 cut(s)	322, 414, 468, 652, 935
SsiI	CCGC	4 cut(s)	31, 343, 526, 897
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	103, 273, 339, 771
TaiI	ACGT	4 cut(s)	67, 333, 458, 511
TaqI	TCGA	2 cut(s)	105, 554
TasI	AATT	5 cut(s)	322, 414, 468, 652, 935
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	529
TfiI	GAWTC	5 cut(s)	8, 482, 514, 607, 881
Tru1I	TTAA	3 cut(s)	522, 570, 777
Tru9I	TTAA	3 cut(s)	522, 570, 777
TscAI	CASTG	2 cut(s)	231, 774
TseI	GCWGC	1 cut(s)	809
TspDTI	ATGAA	4 cut(s)	17, 225, 234, 716
TspGWI	ACGGA	1 cut(s)	874
TspRI	CASTG	2 cut(s)	231, 774
Tth111I	GACNNNGTC	1 cut(s)	769
VpaK11BI	GGWCC	2 cut(s)	76, 691
XmnI	GAANNNNTTC	1 cut(s)	723
ZraI	GACGTC	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.