Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

324712 .. 327357

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00671.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAGGAGACGTTAGATAGATCAGAGCTGCGCAGAATGCAGAGAGAGCAAGAGCGGGAACGACGCCGTATCAGGGACCGGCAGAGGAGGCAGTCCATGACCGTTGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCAATCTAATCAAGTTAGCAATGAACAACAACGTGAAGCTGTGAGTGATGCACCAGAAGTCACTCAGGGTGAAAACATGAGCTTACAGCCTTTGCATTACTCCGACTGTTTGGAGGCTGTGGCTTGTAAAGATTCAAATTTGAGTGTCAAACGGTTGCGGTTGAGTCATGTAAGGCGGCTTGCACGAACGGGGAATCGTTTAGGGAGTGAGGTTATTGCTGATCACCTCATTGTTGGAGAGGAGGTAGCTAAAAGTGATGCCAATAATACAACTTGTGGTTTCCAAACTGGAGATTTTGATTCCAGTAGATTGCCAAATGGGCTACGTTTGAATCGTGTTAAGCAGCTTGCACGGGCAATAAATTCTGCAACAAATGAGGCTTCTGTTAACGGTCGCCTAGTAATGGAAAAAAATATGATGGATCAGAATCATTCCCAGGGAGAAAGTCATGAGATTTGTAATGACAGCTGTAATTTGGACAAACTATCGCTTGCAGAGGTGAAGTTGAAGGATCTAACATGGCCGGTAATGAAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

28.07

Weight (kDa)

9.74

Isoelectric Point (pI)

62.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	32
AccBSI	CCGCTC	1 cut(s)	55
AciI	CCGC	3 cut(s)	55, 346, 364
AclWI	GGATC	2 cut(s)	618, 708
AcoI	YGGCCR	1 cut(s)	710
AcsI	RAATTY	2 cut(s)	325, 550
AcyI	GRCGYC	2 cut(s)	64, 133
AfiI	CCNNNNNNNGG	2 cut(s)	73, 592
AgsI	TTSAA	4 cut(s)	107, 324, 520, 697
AjnI	CCWGG	1 cut(s)	624
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	8 cut(s)	28, 151, 167, 227, 270, 437, 535, 657
AluI	AGCT	8 cut(s)	28, 151, 167, 227, 270, 437, 535, 657
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	2 cut(s)	618, 708
AoxI	GGCC	1 cut(s)	710
ApeKI	GCWGC	2 cut(s)	28, 532
ApoI	RAATTY	2 cut(s)	325, 550
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	269, 404, 700
AvaII	GGWCC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	15, 544
BccI	CCATC	1 cut(s)	601
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	626
BclI	TGATCA	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	1 cut(s)	587
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	3 cut(s)	29, 365, 533
BlsI	GCNGC	3 cut(s)	30, 366, 534
Bme1390I	CCNGG	1 cut(s)	626
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	626
BmsI	GCATC	2 cut(s)	226, 436
BpiI	GAAGAC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	2 cut(s)	64, 133
BsaJI	CCNNGG	3 cut(s)	177, 624, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 592
Bse118I	RCCGGY	2 cut(s)	78, 712
Bse1I	ACTGG	2 cut(s)	481, 492
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	177, 624, 625
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	73, 592
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	152, 166, 266
BseNI	ACTGG	2 cut(s)	481, 492
BseRI	GAGGAG	2 cut(s)	100, 443
BseXI	GCAGC	2 cut(s)	15, 544
Bsh1285I	CGRYCG	1 cut(s)	583
BshFI	GGCC	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	583
BsiSI	CCGG	2 cut(s)	79, 713
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	73, 592
BsmAI	GTCTC	1 cut(s)	2
BsmBI	CGTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	712
Bsp143I	GATC	4 cut(s)	20, 409, 610, 700
BspACI	CCGC	3 cut(s)	55, 346, 364
BspANI	GGCC	1 cut(s)	712
BspCNI	CTCAG	3 cut(s)	153, 165, 265
BspHI	TCATGA	1 cut(s)	637
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	618, 708
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	2 cut(s)	78, 712
BsrI	ACTGG	2 cut(s)	481, 492
BssAI	RCCGGY	2 cut(s)	78, 712
BssECI	CCNNGG	3 cut(s)	177, 624, 625
BssMI	GATC	4 cut(s)	20, 409, 610, 700
BssNI	GRCGYC	2 cut(s)	64, 133
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	4 cut(s)	103, 296, 342, 581
BstACI	GRCGYC	2 cut(s)	64, 133
BstC8I	GCNNGC	3 cut(s)	369, 537, 681
BstDEI	CTNAG	3 cut(s)	152, 161, 252
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	4 cut(s)	23, 412, 613, 703
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	4 cut(s)	20, 409, 610, 700
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 508
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	1 cut(s)	624
BstV1I	GCAGC	2 cut(s)	15, 544
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	700
BsuRI	GGCC	1 cut(s)	712
Cac8I	GCNNGC	3 cut(s)	369, 537, 681
CciI	TCATGA	1 cut(s)	637
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	2 cut(s)	78, 712
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	2 cut(s)	72, 122
CviAII	CATG	5 cut(s)	97, 265, 356, 638, 708
DdeI	CTNAG	3 cut(s)	152, 161, 252
DpnI	GATC	4 cut(s)	22, 411, 612, 702
DpnII	GATC	4 cut(s)	20, 409, 610, 700
EaeI	YGGCCR	1 cut(s)	710
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	5 cut(s)	100, 268, 359, 641, 711
FaiI	YATR	6 cut(s)	98, 266, 357, 605, 639, 709
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	5 cut(s)	96, 264, 355, 637, 707
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	409
Fnu4HI	GCNGC	3 cut(s)	29, 365, 533
Fsp4HI	GCNGC	3 cut(s)	29, 365, 533
FspBI	CTAG	1 cut(s)	587
FspI	TGCGCA	1 cut(s)	32
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	3 cut(s)	29, 365, 533
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	712
HapII	CCGG	2 cut(s)	79, 713
HgaI	GACGC	2 cut(s)	72, 122
HhaI	GCGC	1 cut(s)	33
Hin1I	GRCGYC	2 cut(s)	64, 133
Hin1II	CATG	5 cut(s)	100, 268, 359, 641, 711
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	6 cut(s)	320, 352, 382, 488, 520, 616
HpaI	GTTAAC	1 cut(s)	577
HpaII	CCGG	2 cut(s)	79, 713
HphI	GGTGA	3 cut(s)	269, 404, 700
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	4 cut(s)	25, 155, 292, 615
Hpy188III	TCNNGA	1 cut(s)	638
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	2 cut(s)	66, 138
HpyAV	CCTTC	1 cut(s)	691
HpyCH4III	ACNGT	4 cut(s)	103, 296, 342, 581
HpyCH4IV	ACGT	3 cut(s)	11, 220, 514
HpyCH4V	TGCA	7 cut(s)	40, 239, 283, 371, 539, 557, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 508
HpyF3I	CTNAG	3 cut(s)	152, 161, 252
HpySE526I	ACGT	3 cut(s)	11, 220, 514
Hsp92I	GRCGYC	2 cut(s)	64, 133
Hsp92II	CATG	5 cut(s)	100, 268, 359, 641, 711
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	409
KspAI	GTTAAC	1 cut(s)	577
Kzo9I	GATC	4 cut(s)	20, 409, 610, 700
LpnPI	CCDG	9 cut(s)	58, 92, 110, 239, 255, 462, 505, 611, 638
Lsp1109I	GCAGC	2 cut(s)	15, 544
LweI	GCATC	2 cut(s)	226, 436
MaeI	CTAG	1 cut(s)	587
MaeII	ACGT	3 cut(s)	11, 220, 514
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	4 cut(s)	22, 411, 612, 702
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	20, 409, 610, 700
MboII	GAAGA	1 cut(s)	168
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	3 cut(s)	325, 550, 661
MlyI	GAGTC	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	315, 403
MnlI	CCTC	9 cut(s)	78, 81, 295, 391, 421, 424, 425, 559, 679
MseI	TTAA	2 cut(s)	528, 576
MspA1I	CMGCKG	1 cut(s)	657
MspI	CCGG	2 cut(s)	79, 713
MspR9I	CCNGG	1 cut(s)	626
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	5 cut(s)	37, 46, 88, 173, 508
NdeII	GATC	4 cut(s)	20, 409, 610, 700
NlaIII	CATG	5 cut(s)	100, 268, 359, 641, 711
NlaIV	GGNNCC	1 cut(s)	77
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	32
PagI	TCATGA	1 cut(s)	637
PasI	CCCWGGG	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	5 cut(s)	320, 382, 488, 520, 616
PkrI	GCNGC	3 cut(s)	30, 366, 534
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	657
SaqAI	TTAA	2 cut(s)	528, 576
SatI	GCNGC	3 cut(s)	29, 365, 533
Sau3AI	GATC	4 cut(s)	20, 409, 610, 700
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	626
SfaNI	GCATC	2 cut(s)	226, 436
SinI	GGWCC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	325, 550, 661
SsiI	CCGC	3 cut(s)	55, 346, 364
SspMI	CTAG	1 cut(s)	587
StyD4I	CCNGG	1 cut(s)	624
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	4 cut(s)	103, 296, 342, 581
TaiI	ACGT	3 cut(s)	14, 223, 517
TasI	AATT	3 cut(s)	325, 550, 661
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	5 cut(s)	320, 382, 488, 520, 616
Tru1I	TTAA	2 cut(s)	528, 576
Tru9I	TTAA	2 cut(s)	528, 576
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	28, 532
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	2 cut(s)	17, 225
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	2 cut(s)	325, 550
XspI	CTAG	1 cut(s)	587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.