Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008098

Physical Location & Seq

Genomic Coordinates Forward (+)

541949 .. 543049

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030905

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGGAGTCGTTAGATAGATCAGAGTTGCGGAGAATGCAAAGAGAGCAAGAGCGCGAACGACGTCGTATCAGGGACCGGCAGAGAAGGCAGTCCATGACGGTCGAACAGAGAGAACGACATCTGGCTCGGCGTCGTAGGAACTATCAGCTCAGAAGACTGAGAGCTGAAAATGCCAAGGTGGATTTCCAATCTAATCAAATCAGCAATGAACAACATGAAGCAGTAAGTGATGTTCAAGAAGTTACTCAGAGTGAAAACTTGAGCATACAGCCTTTGCAGTACTCCGAGTGTTTGGATGGTGTGGCTTGTAAAGGTTCTAATTTGAACGTCAGACGGTTGCGGTTGAGTCATGTAAGGCGGCTTGCACGATCAGGGAGTCGTTTAGGGTGTCAGGTTATTGCTGATCACCAAATGGGAGGAGAGGTGGTAGTAAAGGGTGATGCCAATAATACGTCTTGTTTCCAAATTGGAGATTTTGATTCTGGTAGATTGCCAAACGGACTACGTTTGAATCGTGTTAAGCGGCTTGCACGGGCAATAAATACTGCTTCGAATGAGGCTTCTGTTTATGGTCAAGTAATAGAAAAAAACATGATGGATCAGAATCATTCCCAGGGAGAAAGTCAACCGATTAGTAATGACAGTTCTAATTTGGACAAACTATCGCTTGCAGAGGTGAAGTTGAAGGACCTAACATGGACGGATAAACACCCAGCATGGGCTGATGTTGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

28.38

Weight (kDa)

9.72

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008098)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16460 AT4G16460 AT4G16460
fragaria_vesca	FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671 FvH4_3g00671
malus_domestica	MD10G1336000.v1.1
prunus_persica	Prupe.4G007600_v2.0.a1
pyrus_communis	pycom05g32530 pycom10g28550
rosa_chinensis	RchiOBHm_Chr5g0000901
rosa_laevigata	RLG00000030905
rosa_multiflora	Rmu_sc0000255.1_g000019
rosa_roxburghii	Rroxscaffold_1G00075350
rosa_rugosa	Rorug04G0387600 Rorug04G0387700
rosa_samantha	Rh5AG007300 Rh5BG009400 Rh5CG008000 Rh5DG008000
rosa_wichuraiana	Rw5G000760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	67
AccII	CGCG	1 cut(s)	57
AciI	CCGC	4 cut(s)	31, 343, 361, 526
AclWI	GGATC	1 cut(s)	609
AcyI	GRCGYC	2 cut(s)	64, 133
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	721
AgsI	TTSAA	4 cut(s)	239, 328, 514, 688
AjnI	CCWGG	1 cut(s)	615
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	2 cut(s)	151, 167
AluI	AGCT	2 cut(s)	151, 167
AlwI	GGATC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	2 cut(s)	76, 691
AsuHPI	GGTGA	3 cut(s)	401, 452, 691
AsuII	TTCGAA	1 cut(s)	554
AvaII	GGWCC	2 cut(s)	76, 691
BbsI	GAAGAC	1 cut(s)	163
BccI	CCATC	2 cut(s)	293, 592
BciT130I	CCWGG	1 cut(s)	617
BclI	TGATCA	1 cut(s)	406
BisI	GCNGC	2 cut(s)	362, 527
BlsI	GCNGC	2 cut(s)	363, 528
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	76, 691
BmgT120I	GGNCC	2 cut(s)	76, 691
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	163
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	606
BsaHI	GRCGYC	2 cut(s)	64, 133
BsaJI	CCNNGG	3 cut(s)	177, 615, 616
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 414, 441, 444
Bsc4I	CCNNNNNNNGG	1 cut(s)	721
Bse118I	RCCGGY	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	214
Bse8I	GATNNNNATC	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	177, 615, 616
BseGI	GGATG	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	721
BseMI	GCAATG	1 cut(s)	214
BseMII	CTCAG	3 cut(s)	152, 166, 263
BseRI	GAGGAG	1 cut(s)	435
BseYI	CCCAGC	1 cut(s)	715
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	554
Bsp143I	GATC	4 cut(s)	20, 371, 406, 601
BspACI	CCGC	4 cut(s)	31, 343, 361, 526
BspCNI	CTCAG	3 cut(s)	153, 165, 262
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	609
BspT104I	TTCGAA	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	177, 615, 616
BssMI	GATC	4 cut(s)	20, 371, 406, 601
BssNI	GRCGYC	2 cut(s)	64, 133
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	3 cut(s)	103, 339, 647
BstACI	GRCGYC	2 cut(s)	64, 133
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	366, 531, 672
BstDEI	CTNAG	3 cut(s)	152, 161, 249
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	4 cut(s)	23, 374, 409, 604
BstMBI	GATC	4 cut(s)	20, 371, 406, 601
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 46, 88, 173
BstNI	CCWGG	1 cut(s)	617
BstSCI	CCNGG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	3 cut(s)	366, 531, 672
CfoI	GCGC	1 cut(s)	57
Cfr10I	RCCGGY	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	76, 691
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	6 cut(s)	97, 218, 353, 595, 699, 720
CviJI	RGCY	9 cut(s)	128, 151, 167, 274, 308, 364, 529, 563, 725
CviKI_1	RGCY	9 cut(s)	128, 151, 167, 274, 308, 364, 529, 563, 725
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	152, 161, 249
DpnI	GATC	4 cut(s)	22, 373, 408, 603
DpnII	GATC	4 cut(s)	20, 371, 406, 601
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	2 cut(s)	76, 691
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	6 cut(s)	100, 221, 356, 598, 702, 723
FaiI	YATR	8 cut(s)	98, 219, 269, 354, 573, 596, 700, 721
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	6 cut(s)	96, 217, 352, 594, 698, 719
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	2 cut(s)	362, 527
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	2 cut(s)	362, 527
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	2 cut(s)	362, 527
GsaI	CCCAGC	1 cut(s)	719
HapII	CCGG	1 cut(s)	79
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	2 cut(s)	64, 133
Hin1II	CATG	6 cut(s)	100, 221, 356, 598, 702, 723
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	629
HindII	GTYRAC	1 cut(s)	629
HinfI	GANTC	6 cut(s)	8, 349, 379, 482, 514, 607
HpaII	CCGG	1 cut(s)	79
HphI	GGTGA	3 cut(s)	401, 452, 691
Hpy166II	GTNNAC	1 cut(s)	629
Hpy188I	TCNGA	6 cut(s)	25, 155, 252, 289, 335, 606
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	1 cut(s)	629
Hpy99I	CGWCG	3 cut(s)	66, 69, 138
HpyAV	CCTTC	2 cut(s)	81, 682
HpyCH4III	ACNGT	3 cut(s)	103, 339, 647
HpyCH4IV	ACGT	4 cut(s)	64, 330, 455, 508
HpyCH4V	TGCA	5 cut(s)	40, 280, 368, 533, 674
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 46, 88, 173
HpyF3I	CTNAG	3 cut(s)	152, 161, 249
HpySE526I	ACGT	4 cut(s)	64, 330, 455, 508
Hsp92I	GRCGYC	2 cut(s)	64, 133
Hsp92II	CATG	6 cut(s)	100, 221, 356, 598, 702, 723
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	4 cut(s)	20, 371, 406, 601
LpnPI	CCDG	9 cut(s)	58, 92, 110, 360, 380, 471, 602, 629, 729
LweI	GCATC	1 cut(s)	433
MaeII	ACGT	4 cut(s)	64, 330, 455, 508
MaeIII	GTNAC	1 cut(s)	244
MalI	GATC	4 cut(s)	22, 373, 408, 603
MboI	GATC	4 cut(s)	20, 371, 406, 601
MboII	GAAGA	1 cut(s)	168
MluCI	AATT	3 cut(s)	322, 468, 652
MlyI	GAGTC	3 cut(s)	17, 358, 388
MnlI	CCTC	4 cut(s)	413, 418, 553, 670
MseI	TTAA	2 cut(s)	522, 739
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	37, 46, 88, 173
NdeII	GATC	4 cut(s)	20, 371, 406, 601
NlaIII	CATG	6 cut(s)	100, 221, 356, 598, 702, 723
NlaIV	GGNNCC	1 cut(s)	77
NmeAIII	GCCGAG	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	554
PasI	CCCWGGG	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	514
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	3 cut(s)	482, 514, 607
PkrI	GCNGC	2 cut(s)	363, 528
PleI	GAGTC	3 cut(s)	16, 357, 387
PpsI	GAGTC	3 cut(s)	16, 357, 387
PpuMI	RGGWCCY	1 cut(s)	691
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	76, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsrI	GAACNNNNNNTAC	4 cut(s)	219, 251, 631, 663
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	2 cut(s)	522, 739
SatI	GCNGC	2 cut(s)	362, 527
Sau3AI	GATC	4 cut(s)	20, 371, 406, 601
Sau96I	GGNCC	2 cut(s)	76, 691
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	3 cut(s)	17, 358, 388
ScrFI	CCNGG	1 cut(s)	617
SfaNI	GCATC	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	2 cut(s)	76, 691
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	3 cut(s)	322, 468, 652
SsiI	CCGC	4 cut(s)	31, 343, 361, 526
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	103, 339, 647
TaiI	ACGT	4 cut(s)	67, 333, 458, 511
TaqI	TCGA	2 cut(s)	105, 554
TasI	AATT	3 cut(s)	322, 468, 652
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	2 cut(s)	364, 529
TfiI	GAWTC	3 cut(s)	482, 514, 607
Tru1I	TTAA	2 cut(s)	522, 739
Tru9I	TTAA	2 cut(s)	522, 739
TspDTI	ATGAA	3 cut(s)	17, 225, 234
TspGWI	ACGGA	2 cut(s)	516, 719
VpaK11BI	GGWCC	2 cut(s)	76, 691
ZraI	GACGTC	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.