Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Reverse (-)

9703547 .. 9705664

Gene Structure 2118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G17360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGATACGAAGAGTCTCCACCACCTCATGTCTCTCCGCCACAGCTTTTAGATCATTTACCAAATGGTCCTTTAAATCTTCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCTCTTCTCATTCCCGGCTTCCACGTCTTCCATTGTCCGGATGTCGTTGGGATTGTAGCGAAACTTTCAGATTGTATTGCTGCTAAAGGAGGTAACATTCTTGGTTATGATGTTTTTGTTCCTGAGAACAAGAACGTCTTCTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCGAGGAGGCAGATGGATGAAGATTTTCAAACTATTGCACAAAAGTTTAGTGCTTTGAGCTCAGTAGTACGAGTGCCCTCTTTAGACCCCAAATACAAGATAGCTCTTCTACTGTCGAAACAGGATCATTGTCTGGTTGAAATGTTACATAAATGGCAGGATGGAAAACTTCCCGTTGATATAACATGTGTGATAAGTAATCATGAAAGAGCTCCAAACACCCATGTTATGAGGTTTCTCCAGAGGCATGGCATCTCTTATCATTATTTACCAACAACCGATCAGAATAAAATAGAAGAGGAGATTTTGGAATTGGTTAAGGGTACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTATCCGGTAACTTCTTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTGCCATCATTCAAAGGAAGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATTGGTGCAACAACTCACTTTGTTACAGAGGAGCTTGATTCAGGTCCTATCATTGAGCAAATGGTTGAGAGAGTTTCCCACCGAGACAATTTGAGGAGCTTTGTCCAGAAATCAGAGGACCTTGAGAAAAAGTGTCTCATGAAAGCTATAAAATCTTACTGCGAACTGCGAGTATTGCCTTATGGGACACAAAGGACTGTCGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

328

Amino Acids

37.3

Weight (kDa)

8.84

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	132 - 309	2.9e-34	Formyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	755
Acc65I	GGTACC	1 cut(s)	620
AccB1I	GGYRCC	1 cut(s)	620
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	278, 429
AcoI	YGGCCR	1 cut(s)	296
AfaI	GTAC	2 cut(s)	366, 622
AfiI	CCNNNNNNNGG	1 cut(s)	154
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	4 cut(s)	326, 437, 676, 730
AjiI	CACGTC	1 cut(s)	142
AluBI	AGCT	8 cut(s)	44, 357, 401, 509, 655, 811, 876, 923
AluI	AGCT	8 cut(s)	44, 357, 401, 509, 655, 811, 876, 923
Alw21I	GWGCWC	2 cut(s)	359, 511
Alw26I	GTCTC	5 cut(s)	19, 35, 118, 855, 917
AlwI	GGATC	2 cut(s)	278, 429
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	2 cut(s)	296, 712
ApeKI	GCWGC	2 cut(s)	197, 652
Asp700I	GAANNNNTTC	2 cut(s)	254, 321
Asp718I	GGTACC	1 cut(s)	620
AspS9I	GGNCC	3 cut(s)	66, 821, 895
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	1 cut(s)	108
AvaII	GGWCC	3 cut(s)	66, 821, 895
BaeGI	GKGCMC	1 cut(s)	375
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	359, 511
BbsI	GAAGAC	2 cut(s)	136, 247
Bbv12I	GWGCWC	2 cut(s)	359, 511
BbvI	GCAGC	2 cut(s)	184, 664
BccI	CCATC	4 cut(s)	304, 452, 714, 730
BceAI	ACGGC	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	5 cut(s)	19, 35, 118, 855, 917
BfaI	CTAG	3 cut(s)	264, 632, 642
BfuAI	ACCTGC	1 cut(s)	755
BglI	GCCNNNNNGGC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	198, 653
BlsI	GCNGC	2 cut(s)	199, 654
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	3 cut(s)	66, 821, 895
BmgBI	CACGTC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	66, 821, 895
BmiI	GGNNCC	1 cut(s)	622
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	2 cut(s)	558, 751
BpiI	GAAGAC	2 cut(s)	136, 247
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	920
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	299
BsaWI	WCCGGW	2 cut(s)	154, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	287
BseAI	TCCGGA	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	4 cut(s)	163, 319, 463, 702
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	231, 372
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	4 cut(s)	316, 611, 821, 886
BseSI	GKGCMC	1 cut(s)	375
BseXI	GCAGC	2 cut(s)	184, 664
BshFI	GGCC	2 cut(s)	298, 714
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	359, 511
BsiSI	CCGG	3 cut(s)	132, 155, 663
BslFI	GGGAC	2 cut(s)	82, 976
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	5 cut(s)	19, 35, 118, 855, 917
BsmFI	GGGAC	2 cut(s)	82, 976
BsnI	GGCC	2 cut(s)	298, 714
Bsp1286I	GDGCHC	3 cut(s)	359, 375, 511
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	4 cut(s)	50, 283, 421, 577
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	2 cut(s)	298, 714
BspCNI	CTCAG	2 cut(s)	232, 371
BspEI	TCCGGA	1 cut(s)	154
BspHI	TCATGA	2 cut(s)	499, 915
BspLI	GGNNCC	1 cut(s)	622
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	2 cut(s)	278, 429
BspQI	GCTCTTC	1 cut(s)	408
BspT107I	GGYRCC	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	50, 283, 421, 577
Bst4CI	ACNGT	2 cut(s)	411, 976
Bst6I	CTCTTC	4 cut(s)	4, 126, 408, 588
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstDEI	CTNAG	2 cut(s)	240, 358
BstF5I	GGATG	4 cut(s)	163, 319, 463, 702
BstKTI	GATC	4 cut(s)	53, 286, 424, 580
BstMAI	GTCTC	5 cut(s)	19, 35, 118, 855, 917
BstMBI	GATC	4 cut(s)	50, 283, 421, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 761, 952
BstNSI	RCATGY	2 cut(s)	486, 652
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	184, 664
BstV2I	GAAGAC	2 cut(s)	136, 247
BstXI	CCANNNNNNTGG	2 cut(s)	294, 545
BsuRI	GGCC	2 cut(s)	298, 714
BtrI	CACGTC	1 cut(s)	142
BtsCI	GGATG	4 cut(s)	163, 319, 463, 702
BveI	ACCTGC	1 cut(s)	755
CciI	TCATGA	2 cut(s)	499, 915
Cfr13I	GGNCC	3 cut(s)	66, 821, 895
Csp6I	GTAC	2 cut(s)	365, 621
CviAII	CATG	8 cut(s)	27, 483, 500, 521, 545, 649, 710, 916
CviQI	GTAC	2 cut(s)	365, 621
DdeI	CTNAG	2 cut(s)	240, 358
DpnI	GATC	4 cut(s)	52, 285, 423, 579
DpnII	GATC	4 cut(s)	50, 283, 421, 577
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	4 cut(s)	4, 126, 408, 588
EarI	CTCTTC	4 cut(s)	4, 126, 408, 588
EciI	GGCGGA	1 cut(s)	25
Ecl136II	GAGCTC	2 cut(s)	357, 509
Eco24I	GRGCYC	2 cut(s)	359, 511
Eco47I	GGWCC	3 cut(s)	66, 821, 895
Eco53kI	GAGCTC	2 cut(s)	357, 509
EcoICRI	GAGCTC	2 cut(s)	357, 509
EcoO109I	RGGNCCY	2 cut(s)	821, 895
EcoT38I	GRGCYC	2 cut(s)	359, 511
FaeI	CATG	8 cut(s)	30, 486, 503, 524, 548, 652, 713, 919
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	82, 976
FatI	CATG	8 cut(s)	26, 482, 499, 520, 544, 648, 709, 915
Fnu4HI	GCNGC	2 cut(s)	198, 653
FokI	GGATG	4 cut(s)	170, 326, 470, 689
FriOI	GRGCYC	2 cut(s)	359, 511
Fsp4HI	GCNGC	2 cut(s)	198, 653
FspBI	CTAG	3 cut(s)	264, 632, 642
GluI	GCNGC	2 cut(s)	198, 653
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	298, 714
HapII	CCGG	3 cut(s)	132, 155, 663
Hin1II	CATG	8 cut(s)	30, 486, 503, 524, 548, 652, 713, 919
HinfI	GANTC	4 cut(s)	12, 95, 104, 815
HpaII	CCGG	3 cut(s)	132, 155, 663
HphI	GGTGA	1 cut(s)	108
Hpy188I	TCNGA	3 cut(s)	187, 582, 892
Hpy188III	TCNNGA	8 cut(s)	155, 239, 264, 500, 538, 673, 883, 916
HpyCH4III	ACNGT	2 cut(s)	411, 976
HpyCH4IV	ACGT	2 cut(s)	141, 252
HpyCH4V	TGCA	4 cut(s)	335, 652, 764, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 761, 952
HpyF3I	CTNAG	2 cut(s)	240, 358
HpySE526I	ACGT	2 cut(s)	141, 252
Hsp92II	CATG	8 cut(s)	30, 486, 503, 524, 548, 652, 713, 919
Kpn2I	TCCGGA	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	50, 283, 421, 577
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	514, 808, 873
Lsp1109I	GCAGC	2 cut(s)	184, 664
LweI	GCATC	2 cut(s)	558, 751
MaeI	CTAG	3 cut(s)	264, 632, 642
MaeII	ACGT	2 cut(s)	141, 252
MaeIII	GTNAC	4 cut(s)	209, 441, 665, 799
MalI	GATC	4 cut(s)	52, 285, 423, 579
MboI	GATC	4 cut(s)	50, 283, 421, 577
MboII	GAAGA	9 cut(s)	21, 69, 113, 136, 247, 329, 395, 605, 747
MhlI	GDGCHC	3 cut(s)	359, 375, 511
MluCI	AATT	4 cut(s)	83, 608, 777, 865
MlyI	GAGTC	2 cut(s)	21, 104
MroI	TCCGGA	1 cut(s)	154
MroXI	GAANNNNTTC	2 cut(s)	254, 321
MseI	TTAA	2 cut(s)	72, 615
MspI	CCGG	3 cut(s)	132, 155, 663
MspR9I	CCNGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	3 cut(s)	304, 761, 952
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	4 cut(s)	50, 283, 421, 577
NlaIII	CATG	8 cut(s)	30, 486, 503, 524, 548, 652, 713, 919
NlaIV	GGNNCC	1 cut(s)	622
NmeAIII	GCCGAG	1 cut(s)	324
NspI	RCATGY	2 cut(s)	486, 652
PagI	TCATGA	2 cut(s)	499, 915
PaqCI	CACCTGC	1 cut(s)	755
PciI	ACATGT	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	408
PdmI	GAANNNNTTC	2 cut(s)	254, 321
PfeI	GAWTC	2 cut(s)	104, 815
PkrI	GCNGC	2 cut(s)	199, 654
PleI	GAGTC	2 cut(s)	20, 103
PpsI	GAGTC	2 cut(s)	20, 103
PpuMI	RGGWCCY	2 cut(s)	821, 895
PscI	ACATGT	1 cut(s)	482
Psp124BI	GAGCTC	2 cut(s)	359, 511
Psp5II	RGGWCCY	2 cut(s)	821, 895
PspN4I	GGNNCC	1 cut(s)	622
PspPI	GGNCC	3 cut(s)	66, 821, 895
PspPPI	RGGWCCY	2 cut(s)	821, 895
PsrI	GAACNNNNNNTAC	2 cut(s)	242, 274
RsaI	GTAC	2 cut(s)	366, 622
RsaNI	GTAC	2 cut(s)	365, 621
SacI	GAGCTC	2 cut(s)	359, 511
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	72, 615
SatI	GCNGC	2 cut(s)	198, 653
Sau3AI	GATC	4 cut(s)	50, 283, 421, 577
Sau96I	GGNCC	3 cut(s)	66, 821, 895
SchI	GAGTC	2 cut(s)	21, 104
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	359, 375, 511
SfaNI	GCATC	2 cut(s)	558, 751
SinI	GGWCC	3 cut(s)	66, 821, 895
SmlI	CTYRAG	1 cut(s)	899
SmoI	CTYRAG	1 cut(s)	899
Sse9I	AATT	4 cut(s)	83, 608, 777, 865
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	3 cut(s)	264, 632, 642
SstI	GAGCTC	2 cut(s)	359, 511
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	2 cut(s)	411, 976
TaiI	ACGT	2 cut(s)	144, 255
TaqI	TCGA	2 cut(s)	102, 413
TasI	AATT	4 cut(s)	83, 608, 777, 865
TfiI	GAWTC	2 cut(s)	104, 815
Tru1I	TTAA	2 cut(s)	72, 615
Tru9I	TTAA	2 cut(s)	72, 615
TseI	GCWGC	2 cut(s)	197, 652
TspDTI	ATGAA	3 cut(s)	330, 516, 932
VpaK11BI	GGWCC	3 cut(s)	66, 821, 895
XbaI	TCTAGA	1 cut(s)	263
XceI	RCATGY	2 cut(s)	486, 652
XmnI	GAANNNNTTC	2 cut(s)	254, 321
XspI	CTAG	3 cut(s)	264, 632, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.