Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

47728124 .. 47731238

Gene Structure 3115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTCTCGTCCAAAGAGCCTCACCAAAACGCCTCCCCCAACTTTTCGGATTTGCAAAACGGTCCATCAGGTCCTTGAGATTCCCGGGTGAGTCCCCCGACTGTTCATCTTCTCCAATTCTCGCTTATGGAATCCACGTCTTCCATTGCCCCGATGCAGTCGGGATTGTGGCCAAGCTTTCGGAGTCCATTGCTTCTAGAGGAGGTAACATACTCGCTGCCAATGTGTTTGTGCCTGAAAACAGGCACGTCTTCTATTCCAGAAGTGAGTTTATTTTTGATCCTGTTAAATGGACAAGATCACAAATGAATGAGGATTTCAATAAGCTATCACAAATCTACACCGCTCATAGATCTGTGGTCCGAGTGCCAGATCAAGATCCCAAATATAAGATTGGTGTCCTTGCATCAAAGCAGGATCATTGCCTGATTGATTTGCTACATCAGTGGCAGGATGGAAAACTACCAGTAGATATAGCTTGTGTAATAAGTAATCACGAGAGGGGTCCAAACACTGGTGTGTGTCGGTTTCTAGAAAGACACGGTATACCGTACCATTATCTTCACACAACCAATGAGAATAAAAGAGAAGAGGAAATATTGGAGTTGGTTCAAGATACCGACTTTTTAGTCCTTGCGAGGTACATGCAGATACTATCTGGCAATTTTTTAAATAGCTACGGAAAAGATGTAATTAACATTCATCATGGTCTTTTGCCATCATTCAAGGGTGGAAGACCATCTAAACAGGCTTTTGATGCAGGGGTGAAGCTTATTGGTGCAACAACTCATTTTGTGACCCAAGAACTTGACGCAGGGCCTATTATTGAACAGATGGTTGCAAGAGTCTCCCACAGAGATAACTTGCAGAGTTTTGTGCAGAAGTCGGAGAACCTTGAAAAACAATGCCTTTCAAGGTCTATCAAATCGTACTGTGAACTGCGGGTGTTACCTTATGAGGATAACAAGACTGTTGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

327

Amino Acids

37.04

Weight (kDa)

8.6

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	131 - 307	1.5e-34	Formyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	2 cut(s)	345, 943
AclWI	GGATC	3 cut(s)	275, 374, 426
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	3 cut(s)	554, 644, 932
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	6 cut(s)	322, 614, 727, 830, 899, 915
AjiI	CACGTC	2 cut(s)	139, 250
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	178, 328, 479, 678, 772
AluI	AGCT	5 cut(s)	178, 328, 479, 678, 772
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	3 cut(s)	275, 374, 426
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	171, 818
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	5 cut(s)	63, 72, 361, 506, 818
AsuC2I	CCSGG	2 cut(s)	86, 87
AsuHPI	GGTGA	3 cut(s)	15, 101, 778
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	4 cut(s)	63, 72, 361, 506
BalI	TGGCCA	1 cut(s)	173
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	133, 244, 742
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	5 cut(s)	74, 449, 727, 748, 829
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	2 cut(s)	198, 533
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	86, 87
Bme18I	GGWCC	4 cut(s)	63, 72, 361, 506
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	2 cut(s)	139, 250
BmgT120I	GGNCC	5 cut(s)	63, 72, 361, 506, 818
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	86, 87
BmsI	GCATC	3 cut(s)	145, 416, 748
BpiI	GAAGAC	3 cut(s)	133, 244, 742
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	86, 87
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	467, 520
Bse3DI	GCAATG	3 cut(s)	145, 189, 421
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	3 cut(s)	145, 189, 421
BseNI	ACTGG	2 cut(s)	467, 520
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	899
BshFI	GGCC	2 cut(s)	173, 820
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	853
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	173, 820
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BspACI	CCGC	2 cut(s)	345, 943
BspANI	GGCC	2 cut(s)	173, 820
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	3 cut(s)	275, 374, 426
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	145, 189, 421
BsrI	ACTGG	2 cut(s)	467, 520
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	6 cut(s)	63, 104, 545, 552, 935, 973
Bst6I	CTCTTC	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	6 cut(s)	283, 302, 356, 376, 382, 421
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	84, 85
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	3 cut(s)	133, 244, 742
BstX2I	RGATCY	2 cut(s)	353, 379
BstYI	RGATCY	2 cut(s)	353, 379
BstZ17I	GTATAC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	173, 820
BtrI	CACGTC	2 cut(s)	139, 250
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	452, 513
Cfr13I	GGNCC	5 cut(s)	63, 72, 361, 506, 818
Cfr9I	CCCGGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	553, 643, 931
CviAII	CATG	2 cut(s)	646, 707
CviQI	GTAC	3 cut(s)	553, 643, 931
DpnI	GATC	6 cut(s)	282, 301, 355, 375, 381, 420
DpnII	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
DraI	TTTAAA	1 cut(s)	672
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco47I	GGWCC	4 cut(s)	63, 72, 361, 506
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	72, 818
FaeI	CATG	2 cut(s)	649, 710
FaiI	YATR	9 cut(s)	129, 212, 351, 390, 476, 548, 647, 708, 957
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	645, 706
FauI	CCCGC	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	2 cut(s)	198, 533
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	173, 820
HapII	CCGG	1 cut(s)	86
HgaI	GACGC	1 cut(s)	821
Hin1II	CATG	2 cut(s)	649, 710
HindIII	AAGCTT	2 cut(s)	176, 770
HinfI	GANTC	5 cut(s)	81, 92, 132, 185, 846
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	3 cut(s)	15, 101, 778
Hpy166II	GTNNAC	2 cut(s)	548, 938
Hpy188I	TCNGA	4 cut(s)	50, 184, 365, 889
Hpy188III	TCNNGA	7 cut(s)	163, 198, 261, 377, 497, 533, 614
Hpy8I	GTNNAC	2 cut(s)	548, 938
HpyCH4III	ACNGT	6 cut(s)	63, 104, 545, 552, 935, 973
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyCH4V	TGCA	9 cut(s)	56, 158, 407, 649, 761, 782, 842, 868, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92II	CATG	2 cut(s)	649, 710
Kzo9I	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	3 cut(s)	145, 416, 748
MaeI	CTAG	2 cut(s)	198, 533
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	3 cut(s)	206, 796, 948
MalI	GATC	6 cut(s)	282, 301, 355, 375, 381, 420
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
MboII	GAAGA	6 cut(s)	102, 133, 244, 554, 602, 747
MflI	RGATCY	2 cut(s)	353, 379
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	3 cut(s)	117, 664, 693
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	3 cut(s)	101, 194, 855
MmeI	TCCRAC	1 cut(s)	867
MnlI	CCTC	9 cut(s)	31, 44, 194, 197, 307, 495, 586, 633, 952
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	3 cut(s)	288, 671, 696
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	86, 87
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	2 cut(s)	86, 87
NdeII	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
NlaIII	CATG	2 cut(s)	649, 710
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	81, 132
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	3 cut(s)	100, 193, 854
PpsI	GAGTC	3 cut(s)	100, 193, 854
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	5 cut(s)	63, 72, 361, 506, 818
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	353, 379
RsaI	GTAC	3 cut(s)	554, 644, 932
RsaNI	GTAC	3 cut(s)	553, 643, 931
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	288, 671, 696
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
Sau96I	GGNCC	5 cut(s)	63, 72, 361, 506, 818
SchI	GAGTC	3 cut(s)	101, 194, 855
ScrFI	CCNGG	2 cut(s)	86, 87
SfaNI	GCATC	3 cut(s)	145, 416, 748
SinI	GGWCC	4 cut(s)	63, 72, 361, 506
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	117, 664, 693
SsiI	CCGC	2 cut(s)	345, 943
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	2 cut(s)	198, 533
StyD4I	CCNGG	2 cut(s)	84, 85
TaaI	ACNGT	6 cut(s)	63, 104, 545, 552, 935, 973
TaiI	ACGT	2 cut(s)	141, 252
TasI	AATT	3 cut(s)	117, 664, 693
TfiI	GAWTC	2 cut(s)	81, 132
Tru1I	TTAA	3 cut(s)	288, 671, 696
Tru9I	TTAA	3 cut(s)	288, 671, 696
TscAI	CASTG	2 cut(s)	452, 520
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	96, 323, 692
TspGWI	ACGGA	1 cut(s)	696
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	2 cut(s)	452, 520
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	4 cut(s)	63, 72, 361, 506
XbaI	TCTAGA	2 cut(s)	197, 532
XceI	RCATGY	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	198, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.