Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

6002530 .. 6003453

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0077800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCGGCCCTGGAACCGGAGGACGAATCTGATCGCCCTGCTAGCAAGAAGGCAACCTCGATAAGGAAGAAGACCACCGAGGTCGGCGCCAGAGTCGGTGCGGTAGAGATGGCCATGCTGCACCAGACGGCCATGCTGCACCACAAGGCGAAGGCGGCGGCGACAGGGGGTCAAATGGAGGAGATGAAGCCGTGTAGGGCGGCTGCGGAGGAGAGCGAGTTCGTGGATCGGGTCAACTTGAAGAAGACGTCGGTGCTCTCTTCTTCTTCTTCTTCTTTCTCGTTCTCAACGCCGTCATCGCAGTTGAGACTCTTTCCCCGGCAATGTCCGTGGTCGTCAAGGATTTTCACAAGCACCAGCTCAAGATCACCATTTGGAATGAGGAAGTGTTCTTGGAAAACGTCGAGCTTAGTGTCGAAGCCTTTGGTTATCTTAGCGAGGTCCCAGAACTCTGTTCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

154

Amino Acids

16.81

Weight (kDa)

10.02

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	6 cut(s)	5, 101, 155, 158, 200, 206
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	2 cut(s)	111, 129
AcyI	GRCGYC	2 cut(s)	87, 248
AfiI	CCNNNNNNNGG	2 cut(s)	16, 63
AgsI	TTSAA	1 cut(s)	241
AhdI	GACNNNNNGTC	1 cut(s)	168
AjnI	CCWGG	1 cut(s)	9
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	2 cut(s)	360, 408
AluI	AGCT	2 cut(s)	360, 408
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	6, 111, 129
ApeKI	GCWGC	3 cut(s)	118, 136, 203
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	7, 441
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	360
AsuNHI	GCTAGC	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	2 cut(s)	77, 251
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	105, 123, 190
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	3 cut(s)	144, 175, 277
BciT130I	CCWGG	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	7 cut(s)	6, 119, 137, 156, 159, 201, 204
BlsI	GCNGC	7 cut(s)	7, 120, 138, 157, 160, 202, 205
Bme1390I	CCNGG	2 cut(s)	11, 319
Bme18I	GGWCC	1 cut(s)	441
BmeRI	GACNNNNNGTC	1 cut(s)	168
BmgT120I	GGNCC	2 cut(s)	7, 441
BmiI	GGNNCC	3 cut(s)	15, 88, 443
BmrFI	CCNGG	2 cut(s)	11, 319
BmtI	GCTAGC	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	77, 251
BpuEI	CTTGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	319
BsaHI	GRCGYC	2 cut(s)	87, 248
BsaJI	CCNNGG	4 cut(s)	9, 78, 317, 329
BsaWI	WCCGGW	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 63
Bse3DI	GCAATG	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	4 cut(s)	9, 78, 317, 329
BseLI	CCNNNNNNNGG	2 cut(s)	16, 63
BseMI	GCAATG	1 cut(s)	329
BseRI	GAGGAG	2 cut(s)	194, 224
BseXI	GCAGC	3 cut(s)	105, 123, 190
BsgI	GTGCAG	2 cut(s)	104, 122
BshFI	GGCC	3 cut(s)	8, 113, 131
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	17, 319
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	2 cut(s)	16, 63
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	427
BsnI	GGCC	3 cut(s)	8, 113, 131
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	31, 226, 365
BspACI	CCGC	6 cut(s)	5, 101, 155, 158, 200, 206
BspANI	GGCC	3 cut(s)	8, 113, 131
BspLI	GGNNCC	3 cut(s)	15, 88, 443
BspOI	GCTAGC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	9, 78, 317, 329
BssMI	GATC	3 cut(s)	31, 226, 365
BssNI	GRCGYC	2 cut(s)	87, 248
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	265
BstACI	GRCGYC	2 cut(s)	87, 248
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	409, 433
BstDSI	CCRYGG	1 cut(s)	329
BstENI	CCTNNNNNAGG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	34, 229, 368
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	3 cut(s)	31, 226, 365
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 155, 298
BstNI	CCWGG	1 cut(s)	11
BstSCI	CCNGG	2 cut(s)	9, 317
BstV1I	GCAGC	3 cut(s)	105, 123, 190
BstV2I	GAAGAC	2 cut(s)	77, 251
BsuRI	GGCC	3 cut(s)	8, 113, 131
BtgI	CCRYGG	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	7, 441
CspCI	CAANNNNNGTGG	2 cut(s)	311, 346
CviAII	CATG	2 cut(s)	115, 133
CviJI	RGCY	8 cut(s)	8, 113, 131, 190, 203, 360, 408, 421
CviKI_1	RGCY	8 cut(s)	8, 113, 131, 190, 203, 360, 408, 421
DdeI	CTNAG	2 cut(s)	409, 433
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	33, 228, 367
DpnII	GATC	3 cut(s)	31, 226, 365
DriI	GACNNNNNGTC	1 cut(s)	168
EaeI	YGGCCR	2 cut(s)	111, 129
Eam1104I	CTCTTC	1 cut(s)	265
Eam1105I	GACNNNNNGTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	61
EcoO109I	RGGNCCY	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	9
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	2 cut(s)	118, 136
FaiI	YATR	2 cut(s)	116, 134
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	2 cut(s)	114, 132
Fnu4HI	GCNGC	7 cut(s)	6, 119, 137, 156, 159, 201, 204
Fsp4HI	GCNGC	7 cut(s)	6, 119, 137, 156, 159, 201, 204
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	7 cut(s)	6, 119, 137, 156, 159, 201, 204
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	3 cut(s)	8, 113, 131
HapII	CCGG	2 cut(s)	17, 319
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 248
Hin1II	CATG	2 cut(s)	118, 136
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	26, 93, 309
HpaII	CCGG	2 cut(s)	17, 319
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	2 cut(s)	253, 406
HpyAV	CCTTC	2 cut(s)	43, 145
HpyCH4IV	ACGT	2 cut(s)	248, 401
HpyCH4V	TGCA	2 cut(s)	121, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 155, 298
HpyF3I	CTNAG	2 cut(s)	409, 433
HpySE526I	ACGT	2 cut(s)	248, 401
Hsp92I	GRCGYC	2 cut(s)	87, 248
Hsp92II	CATG	2 cut(s)	118, 136
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	31, 226, 365
LpnPI	CCDG	9 cut(s)	23, 30, 51, 103, 137, 150, 332, 370, 458
Lsp1109I	GCAGC	3 cut(s)	105, 123, 190
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	2 cut(s)	248, 401
MalI	GATC	3 cut(s)	33, 228, 367
MboI	GATC	3 cut(s)	31, 226, 365
MboII	GAAGA	9 cut(s)	79, 82, 252, 253, 255, 256, 258, 261, 264
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	113
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	102, 303
MnlI	CCTC	7 cut(s)	13, 67, 73, 172, 202, 375, 432
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
Msp20I	TGGCCA	1 cut(s)	113
MspI	CCGG	2 cut(s)	17, 319
MspR9I	CCNGG	2 cut(s)	11, 319
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	3 cut(s)	42, 155, 298
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	31, 226, 365
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	118, 136
NlaIV	GGNNCC	3 cut(s)	15, 88, 443
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	7 cut(s)	7, 120, 138, 157, 160, 202, 205
PleI	GAGTC	2 cut(s)	101, 303
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	2 cut(s)	101, 303
PpuMI	RGGWCCY	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	3 cut(s)	15, 88, 443
PspPI	GGNCC	2 cut(s)	7, 441
PspPPI	RGGWCCY	1 cut(s)	441
SatI	GCNGC	7 cut(s)	6, 119, 137, 156, 159, 201, 204
Sau3AI	GATC	3 cut(s)	31, 226, 365
Sau96I	GGNCC	2 cut(s)	7, 441
SchI	GAGTC	2 cut(s)	102, 303
ScrFI	CCNGG	2 cut(s)	11, 319
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	7 cut(s)	59, 84, 251, 362, 404, 410, 443
SfoI	GGCGCC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	361
SmoI	CTYRAG	1 cut(s)	361
SsiI	CCGC	6 cut(s)	5, 101, 155, 158, 200, 206
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	9, 317
TaiI	ACGT	2 cut(s)	251, 404
TaqI	TCGA	3 cut(s)	59, 404, 416
TauI	GCSGC	4 cut(s)	8, 158, 161, 203
TfiI	GAWTC	1 cut(s)	26
TseI	GCWGC	3 cut(s)	118, 136, 203
TspDTI	ATGAA	1 cut(s)	200
TspGWI	ACGGA	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	61
XspI	CTAG	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.