Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

49521128 .. 49523931

Gene Structure 2804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003514

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTCTCGTCCAAAGAGCCCCACCAAAACGCCTTCCCAAACTTTTCGGATTTGCAAAACGGTCCATCAGGAACTTGAGATTCCCGGGTGAGTCCCCCGACTGTTCATCTTCTCCAACTCTCGCTTATGGAATCCACGTCTTCCATTGCCCCGATGCAGTTGGGATTGTGGCCAAGCTTTCGGAGTCCATTGCTTCTAGAGGAGGTAACATACTCGCTGCCAATGTGTTTGTGCCTGAAAACAAGCACGTCTTCTATTCCAGAAGTGAGTTTATTTTTGATCCTGTTAAATGGACAAGATCACAAATGAATGAGGATTTCAGTAAGCTATCACAAATGTATGGCGCACATAGATCTGTGGTTCGAGTTCCAGATCAAGATCCCAAATATAAGATTGGTGTCCTTGCATCAAAACAGGATCATTGCCTGATTGATTTGCTACATCAGTGGCAGGATGGAAAACTACCGCTAGATATAGCTTGTGTGATAAGTAATCACGAGAGGGGTCCAAACACTGGTGTGTCTCGGTTTCTAGAAAGACATGGTATACCGTATCATTATCTTCACACAACCAAAGAGAATAAAAGAGAAGAGGAAATATTGGAGTTGGTTCAAGATACCGACTTTTTAGTACTTGCGAGGTACATGCAGATACTATCTGGCAATTTTTTAAATAGCTACGGAAAAGATGTAATTAACATTCATCATGGTCTTTTGCCATCATTCAAGGGTGGAAGACCATCTAAACAGGCTTTTGATGCAGGGGTGAAGCTTATTGGTGCAACAACTCATTTTGTGACCCAAGAACTTGATGCAGGGCCTATTATTGAACAGATGGTTGCAAGAGTGTCCCACAGAGATAACTTGCAGAGTTTTGTGCAGAAGTCGGAGAACCTTGAAAAACAATGCCTTTCAAGGTCTATCAAATCATACTGTGAACTGCGGGTGTTACCTTATGAGGATAACAAGACTGTTGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

328

Amino Acids

37.0

Weight (kDa)

8.91

Isoelectric Point (pI)

57.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	131 - 307	9.4e-34	Formyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	2 cut(s)	467, 943
AclWI	GGATC	3 cut(s)	275, 374, 426
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	2 cut(s)	633, 644
AfiI	CCNNNNNNNGG	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	614, 727, 830, 899, 915
AjiI	CACGTC	2 cut(s)	139, 250
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	178, 328, 479, 678, 772
AluI	AGCT	5 cut(s)	178, 328, 479, 678, 772
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	275, 374, 426
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	171, 818
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	63, 506, 818
AsuC2I	CCSGG	2 cut(s)	86, 87
AsuHPI	GGTGA	2 cut(s)	101, 778
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	2 cut(s)	63, 506
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	3 cut(s)	133, 244, 742
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	5 cut(s)	74, 449, 727, 748, 829
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BcnI	CCSGG	2 cut(s)	86, 87
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	3 cut(s)	198, 470, 533
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	2 cut(s)	86, 87
Bme18I	GGWCC	2 cut(s)	63, 506
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	2 cut(s)	139, 250
BmgT120I	GGNCC	3 cut(s)	63, 506, 818
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	2 cut(s)	86, 87
BmsI	GCATC	4 cut(s)	145, 416, 748, 802
BpiI	GAAGAC	3 cut(s)	133, 244, 742
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	2 cut(s)	86, 87
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	3 cut(s)	145, 189, 421
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	460
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	3 cut(s)	145, 189, 421
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	899
BshFI	GGCC	2 cut(s)	173, 820
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	86
BslFI	GGGAC	2 cut(s)	79, 835
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	2 cut(s)	79, 835
BsnI	GGCC	2 cut(s)	173, 820
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BspACI	CCGC	2 cut(s)	467, 943
BspANI	GGCC	2 cut(s)	173, 820
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	3 cut(s)	275, 374, 426
BsrDI	GCAATG	3 cut(s)	145, 189, 421
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	5 cut(s)	63, 104, 552, 935, 973
Bst6I	CTCTTC	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	6 cut(s)	283, 302, 356, 376, 382, 421
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	2 cut(s)	84, 85
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	3 cut(s)	133, 244, 742
BstX2I	RGATCY	2 cut(s)	353, 379
BstYI	RGATCY	2 cut(s)	353, 379
BstZ17I	GTATAC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	173, 820
BtrI	CACGTC	2 cut(s)	139, 250
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	452, 513
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	3 cut(s)	63, 506, 818
Cfr9I	CCCGGG	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	632, 643
CviAII	CATG	3 cut(s)	542, 646, 707
CviQI	GTAC	2 cut(s)	632, 643
DpnI	GATC	6 cut(s)	282, 301, 355, 375, 381, 420
DpnII	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	63, 506
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	818
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	3 cut(s)	545, 649, 710
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	2 cut(s)	79, 835
FatI	CATG	3 cut(s)	541, 645, 706
FauI	CCCGC	1 cut(s)	936
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	3 cut(s)	198, 470, 533
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	173, 820
HapII	CCGG	1 cut(s)	86
HhaI	GCGC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	545, 649, 710
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	2 cut(s)	176, 770
HinfI	GANTC	4 cut(s)	81, 92, 132, 185
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	2 cut(s)	101, 778
Hpy166II	GTNNAC	2 cut(s)	548, 938
Hpy188I	TCNGA	3 cut(s)	50, 184, 889
Hpy188III	TCNNGA	8 cut(s)	70, 198, 261, 371, 377, 497, 533, 614
Hpy8I	GTNNAC	2 cut(s)	548, 938
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	5 cut(s)	63, 104, 552, 935, 973
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92II	CATG	3 cut(s)	545, 649, 710
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	4 cut(s)	145, 416, 748, 802
MaeI	CTAG	3 cut(s)	198, 470, 533
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	3 cut(s)	206, 796, 948
MalI	GATC	6 cut(s)	282, 301, 355, 375, 381, 420
MboI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
MboII	GAAGA	6 cut(s)	102, 133, 244, 554, 602, 747
MflI	RGATCY	2 cut(s)	353, 379
MhlI	GDGCHC	1 cut(s)	22
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	664, 693
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	101, 194
MmeI	TCCRAC	2 cut(s)	140, 867
MnlI	CCTC	7 cut(s)	194, 197, 307, 495, 586, 633, 952
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	3 cut(s)	288, 671, 696
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	86, 87
MwoI	GCNNNNNNNGC	1 cut(s)	758
NciI	CCSGG	2 cut(s)	86, 87
NdeII	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
NlaIII	CATG	3 cut(s)	545, 649, 710
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	81, 132
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	2 cut(s)	100, 193
PpsI	GAGTC	2 cut(s)	100, 193
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	3 cut(s)	63, 506, 818
PsuI	RGATCY	2 cut(s)	353, 379
RsaI	GTAC	2 cut(s)	633, 644
RsaNI	GTAC	2 cut(s)	632, 643
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	288, 671, 696
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	6 cut(s)	280, 299, 353, 373, 379, 418
Sau96I	GGNCC	3 cut(s)	63, 506, 818
ScaI	AGTACT	1 cut(s)	633
SchI	GAGTC	2 cut(s)	101, 194
ScrFI	CCNGG	2 cut(s)	86, 87
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	4 cut(s)	145, 416, 748, 802
SinI	GGWCC	2 cut(s)	63, 506
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
Sse9I	AATT	2 cut(s)	664, 693
SsiI	CCGC	2 cut(s)	467, 943
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	3 cut(s)	198, 470, 533
StyD4I	CCNGG	2 cut(s)	84, 85
TaaI	ACNGT	5 cut(s)	63, 104, 552, 935, 973
TaiI	ACGT	2 cut(s)	141, 252
TaqI	TCGA	1 cut(s)	364
TasI	AATT	2 cut(s)	664, 693
TatI	WGTACW	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	81, 132
Tru1I	TTAA	3 cut(s)	288, 671, 696
Tru9I	TTAA	3 cut(s)	288, 671, 696
TscAI	CASTG	2 cut(s)	452, 520
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	96, 323, 692
TspGWI	ACGGA	1 cut(s)	696
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	2 cut(s)	452, 520
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	2 cut(s)	63, 506
XbaI	TCTAGA	2 cut(s)	197, 532
XceI	RCATGY	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	3 cut(s)	198, 470, 533
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.