Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Reverse (-)

18932236 .. 18935233

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG207200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTCTCGTCCACAGAGCCTCACCAAAACGCCTCCCCAAACTTTTCGGATTTGCAAAACGGTCCATCAGGAACTTGAGATTCCCGGGTGAGTCCCCCGACTGTTCATCTTCTCCAGCTCTCGCTTATGGAATCCACGTCTTCCATTGCCCGGACGCAGTTGGGATTGTGGCCAAGCTTTCGGAGTCCATTGCTTCTAGAGGAGGTAACATACTCGCTGCCAATGTGTTTGTGCCTGAAAACAAGGACGTCTTCTATTCCAGAAGTGAGTTTATTTTTGATCCTGTTAAATGGACAAGATCACAAATGAATGAGGATTTCAGTAAGCTATCACAAATGTACGCCGCGCATAGATCTGTGGTCCGAGTGCCAGATCAAGACCCAAAATATAAGATTGGTGTCCTTGCGTCAAAGCAGGATCATTGCCTGATTGATTTGCTACATCAGTGGCAGGATGGAAAACTACCATTAGATATAGCTTGTGTAATAAGTAATCACGAGAGGGGTCCAAACACTGGTGTGTGTCGGTTTCTAGAAAGACATGGTATACCATATCATTATCTTCACACGACCAAAGAGAATAAAAGAGAAGAGGAAATATTGGAGTTGGTTCAAGATACCGACTTTTTAGTCCTTGCGAGGTACATGCAGGTAATCAGGCTATGGATTCTATATATAATCTCACCATTTCAAACTGCATTGCTGAAGAAGTTTGCAGTACTAACCGGAGGAAATAGCTTCTCCTTGTTCTTCAGTTGTAGAAGTCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

257

Amino Acids

29.26

Weight (kDa)

9.11

Isoelectric Point (pI)

61.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	347
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	275, 426
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	725, 736
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	3 cut(s)	341, 644, 720
AfiI	CCNNNNNNNGG	2 cut(s)	151, 515
AgsI	TTSAA	2 cut(s)	614, 692
AjiI	CACGTC	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	5 cut(s)	119, 178, 328, 479, 738
AluI	AGCT	5 cut(s)	119, 178, 328, 479, 738
AlwI	GGATC	2 cut(s)	275, 426
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	3 cut(s)	63, 361, 506
AsuC2I	CCSGG	3 cut(s)	86, 87, 152
AsuHPI	GGTGA	3 cut(s)	15, 101, 675
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	63, 361, 506
BalI	TGGCCA	1 cut(s)	173
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	133, 244
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	74, 449
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BcnI	CCSGG	3 cut(s)	86, 87, 152
BfaI	CTAG	2 cut(s)	198, 533
BfuAI	ACCTGC	1 cut(s)	640
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	219, 345
BlsI	GCNGC	2 cut(s)	220, 346
BmcAI	AGTACT	1 cut(s)	720
Bme1390I	CCNGG	3 cut(s)	86, 87, 152
Bme18I	GGWCC	3 cut(s)	63, 361, 506
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	63, 361, 506
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	3 cut(s)	86, 87, 152
BpiI	GAAGAC	2 cut(s)	133, 244
BpmI	CTGGAG	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	3 cut(s)	86, 87, 152
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	725
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 515
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	4 cut(s)	145, 189, 421, 698
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	151, 515
BseMI	GCAATG	4 cut(s)	145, 189, 421, 698
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	3 cut(s)	86, 152, 726
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	151, 515
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	173
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	5 cut(s)	280, 299, 353, 373, 418
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	275, 426
BsrDI	GCAATG	4 cut(s)	145, 189, 421, 698
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	280, 299, 353, 373, 418
BssNAI	GTATAC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	63, 104
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	5 cut(s)	283, 302, 356, 376, 421
BstMBI	GATC	5 cut(s)	280, 299, 353, 373, 418
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	84, 85, 150
BstUI	CGCG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	133, 244
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	452, 513
BveI	ACCTGC	1 cut(s)	640
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	3 cut(s)	63, 361, 506
Cfr9I	CCCGGG	1 cut(s)	85
CseI	GACGC	2 cut(s)	164, 396
Csp6I	GTAC	3 cut(s)	340, 643, 719
CviAII	CATG	2 cut(s)	542, 646
CviJI	RGCY	9 cut(s)	5, 20, 119, 173, 178, 328, 479, 661, 738
CviKI_1	RGCY	9 cut(s)	5, 20, 119, 173, 178, 328, 479, 661, 738
CviQI	GTAC	3 cut(s)	340, 643, 719
DpnI	GATC	5 cut(s)	282, 301, 355, 375, 420
DpnII	GATC	5 cut(s)	280, 299, 353, 373, 418
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	63, 361, 506
Eco57I	CTGAAG	2 cut(s)	725, 736
Eco88I	CYCGRG	1 cut(s)	85
FaeI	CATG	2 cut(s)	545, 649
FalI	AAGNNNNNCTT	3 cut(s)	236, 268, 754
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	541, 645
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	219, 345
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	219, 345
FspBI	CTAG	2 cut(s)	198, 533
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	2 cut(s)	219, 345
GsuI	CTGGAG	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	3 cut(s)	86, 152, 726
HgaI	GACGC	2 cut(s)	164, 396
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	545, 649
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	5 cut(s)	81, 92, 132, 185, 667
HpaII	CCGG	3 cut(s)	86, 152, 726
HphI	GGTGA	3 cut(s)	15, 101, 675
Hpy166II	GTNNAC	2 cut(s)	13, 548
Hpy188I	TCNGA	3 cut(s)	50, 184, 365
Hpy188III	TCNNGA	7 cut(s)	70, 198, 261, 377, 497, 533, 614
Hpy8I	GTNNAC	2 cut(s)	13, 548
HpyCH4III	ACNGT	2 cut(s)	63, 104
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyCH4V	TGCA	4 cut(s)	56, 649, 698, 716
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	545, 649
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	5 cut(s)	280, 299, 353, 373, 418
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	198, 533
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	1 cut(s)	206
MalI	GATC	5 cut(s)	282, 301, 355, 375, 420
MboI	GATC	5 cut(s)	280, 299, 353, 373, 418
MboII	GAAGA	7 cut(s)	102, 133, 244, 554, 602, 718, 742
MflI	RGATCY	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	101, 194
MnlI	CCTC	9 cut(s)	31, 44, 194, 197, 307, 495, 586, 633, 722
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	3 cut(s)	86, 152, 726
MspR9I	CCNGG	3 cut(s)	86, 87, 152
MvnI	CGCG	1 cut(s)	347
NciI	CCSGG	3 cut(s)	86, 87, 152
NdeII	GATC	5 cut(s)	280, 299, 353, 373, 418
NlaIII	CATG	2 cut(s)	545, 649
NlaIV	GGNNCC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	81, 132, 667
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	220, 346
PleI	GAGTC	2 cut(s)	100, 193
PpsI	GAGTC	2 cut(s)	100, 193
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	3 cut(s)	63, 361, 506
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	3 cut(s)	341, 644, 720
RsaNI	GTAC	3 cut(s)	340, 643, 719
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	219, 345
Sau3AI	GATC	5 cut(s)	280, 299, 353, 373, 418
Sau96I	GGNCC	3 cut(s)	63, 361, 506
ScaI	AGTACT	1 cut(s)	720
SchI	GAGTC	2 cut(s)	101, 194
ScrFI	CCNGG	3 cut(s)	86, 87, 152
SinI	GGWCC	3 cut(s)	63, 361, 506
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	2 cut(s)	198, 533
StyD4I	CCNGG	3 cut(s)	84, 85, 150
TaaI	ACNGT	2 cut(s)	63, 104
TaiI	ACGT	2 cut(s)	141, 252
TatI	WGTACW	1 cut(s)	718
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	3 cut(s)	81, 132, 667
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	452, 520
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	2 cut(s)	96, 323
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	2 cut(s)	452, 520
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	63, 361, 506
XbaI	TCTAGA	2 cut(s)	197, 532
XceI	RCATGY	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	198, 533
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.