Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Reverse (-)

11039678 .. 11042981

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19130.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTCTCGTCCAAAGAGCCTCACCAAAACGCCTCACCAATCTTTTCCGATTCCCAAAGCGGTCCCTCAGGTCCTTGAGATTCCCGGGCGAGTCCAACGACTGTTCATCTTCCCCAGCTCTCGCTTATGGAATCCACGTCTTCCATTGCCCGGATGCAGTTGGGATTGTGGCCAAGCTATCCGAGTCCATTGCTTCCAGAGGAGGTAACATACTCGGTGCCAATGTGTTTGTGCCGGAAAACAAGCACGTCTTCTATTCCAGAAGTGAGTTTATTTTTGATCCTGTTAAATGGACAAGATCACAAATGAATGAGGATTTCAGTAAGCTATCACAAATTTACGCCGCTCATAGATCTGTGGTCCGAGTGCCGGATCAAGACCCCAAATATAAGATTGGTGTCCTTGCCTCAAAGCAGGATCATTGCTTGATTGATTTGTTACATCAGTGGCAGGATGGTAAACTGCCGGTAGATATAGCTTGTGTAATAAGTAATCACGAGAGAGGTCCGAACACTAGTGTGTCTCGGTTTCTAGAAAGACATGGTATACCGTATCATTGTCTTCATACAACTAAAGAGAATAATAAAAGAGAAGAGGATATATTGAAGTTGGTTCAAAATACCGACTTTTTAGTCCTTGCGAGGTACATGCAGATATTATCTGGCGATTTTTTAAGTAGCTACGGGAAAGATGTGATTAACATTCATCATGGTCTATTGCCATCATTTAAGGGTGGAAGACCATCTAAACAGGCTTTTGATGCAGGGGTGAAGCTTATTGGTGCAACAACGCATTTTGTGACCCAAGAACTTGATGCAGGGCCTATCATTGAGCAGATGGTTACACGAGTTTCCCACAAAGATAACTTGCAGAGTTTTGTGCAGAAGTCGGAGAACCTTGAAAAACTATGCCTTTTAAGAACCATCAAATCATACTGTGAACTGCGGGTATTACCATATGAGGATAACAAGACTGTTGTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

329

Amino Acids

37.1

Weight (kDa)

9.07

Isoelectric Point (pI)

55.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	3 cut(s)	61, 345, 946
AclWI	GGATC	3 cut(s)	275, 381, 426
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	336
AfaI	GTAC	1 cut(s)	647
AfiI	CCNNNNNNNGG	2 cut(s)	151, 370
AgsI	TTSAA	3 cut(s)	607, 617, 902
AhlI	ACTAGT	1 cut(s)	515
AjiI	CACGTC	2 cut(s)	139, 250
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	6 cut(s)	119, 178, 328, 479, 681, 775
AluI	AGCT	6 cut(s)	119, 178, 328, 479, 681, 775
Alw26I	GTCTC	1 cut(s)	528
AlwI	GGATC	3 cut(s)	275, 381, 426
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	171, 821
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	5 cut(s)	63, 72, 361, 506, 821
AsuC2I	CCSGG	3 cut(s)	86, 87, 152
AsuHPI	GGTGA	3 cut(s)	15, 28, 781
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	4 cut(s)	63, 72, 361, 506
AxyI	CCTNAGG	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	218
BauI	CACGAG	2 cut(s)	497, 846
BbsI	GAAGAC	4 cut(s)	133, 244, 554, 745
BccI	CCATC	5 cut(s)	449, 730, 751, 832, 932
BcgI	CGANNNNNNTGC	4 cut(s)	173, 207, 631, 665
BcnI	CCSGG	3 cut(s)	86, 87, 152
BcoDI	GTCTC	1 cut(s)	528
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	2 cut(s)	516, 533
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
Bme1390I	CCNGG	3 cut(s)	86, 87, 152
Bme18I	GGWCC	4 cut(s)	63, 72, 361, 506
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	2 cut(s)	139, 250
BmgT120I	GGNCC	5 cut(s)	63, 72, 361, 506, 821
BmiI	GGNNCC	2 cut(s)	65, 220
BmrFI	CCNGG	3 cut(s)	86, 87, 152
BmsI	GCATC	3 cut(s)	145, 751, 805
BpiI	GAAGAC	4 cut(s)	133, 244, 554, 745
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	3 cut(s)	86, 87, 152
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 370
Bse118I	RCCGGY	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	3 cut(s)	145, 189, 421
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	2 cut(s)	160, 460
BseLI	CCNNNNNNNGG	2 cut(s)	151, 370
BseMI	GCAATG	3 cut(s)	145, 189, 421
BseMII	CTCAG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	216
BseYI	CCCAGC	1 cut(s)	115
BsgI	GTGCAG	1 cut(s)	902
BshFI	GGCC	2 cut(s)	173, 823
BshNI	GGYRCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	5 cut(s)	86, 152, 236, 371, 467
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	151, 370
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	173, 823
BsoBI	CYCGRG	1 cut(s)	85
Bsp143I	GATC	5 cut(s)	280, 299, 353, 373, 418
BspACI	CCGC	3 cut(s)	61, 345, 946
BspANI	GGCC	2 cut(s)	173, 823
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	65, 220
BspPI	GGATC	3 cut(s)	275, 381, 426
BspT107I	GGYRCC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	145, 189, 421
BsrFI	RCCGGY	1 cut(s)	466
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	280, 299, 353, 373, 418
BssNAI	GTATAC	1 cut(s)	548
BssSI	CACGAG	2 cut(s)	497, 846
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	2 cut(s)	497, 846
Bst4CI	ACNGT	4 cut(s)	104, 552, 938, 976
Bst6I	CTCTTC	1 cut(s)	588
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	160, 460
BstKTI	GATC	5 cut(s)	283, 302, 356, 376, 421
BstMAI	GTCTC	1 cut(s)	528
BstMBI	GATC	5 cut(s)	280, 299, 353, 373, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNSI	RCATGY	1 cut(s)	652
BstSCI	CCNGG	3 cut(s)	84, 85, 150
BstV2I	GAAGAC	4 cut(s)	133, 244, 554, 745
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	548
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	173, 823
BtrI	CACGTC	2 cut(s)	139, 250
BtsCI	GGATG	2 cut(s)	160, 460
BtsIMutI	CAGTG	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	466
Cfr13I	GGNCC	5 cut(s)	63, 72, 361, 506, 821
Cfr9I	CCCGGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	3 cut(s)	542, 649, 710
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	5 cut(s)	282, 301, 355, 375, 420
DpnII	GATC	5 cut(s)	280, 299, 353, 373, 418
DrdI	GACNNNNNNGTC	1 cut(s)	632
DseDI	GACNNNNNNGTC	1 cut(s)	632
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Eco47I	GGWCC	4 cut(s)	63, 72, 361, 506
Eco81I	CCTNAGG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	72, 821
FaeI	CATG	3 cut(s)	545, 652, 713
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	3 cut(s)	541, 648, 709
FauI	CCCGC	1 cut(s)	939
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	2 cut(s)	167, 467
Fsp4HI	GCNGC	1 cut(s)	345
FspBI	CTAG	2 cut(s)	516, 533
GluI	GCNGC	1 cut(s)	345
GsaI	CCCAGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	173, 823
HapII	CCGG	5 cut(s)	86, 152, 236, 371, 467
Hin1II	CATG	3 cut(s)	545, 652, 713
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	5 cut(s)	51, 81, 92, 132, 185
HpaII	CCGG	5 cut(s)	86, 152, 236, 371, 467
HphI	GGTGA	3 cut(s)	15, 28, 781
Hpy166II	GTNNAC	3 cut(s)	461, 548, 941
Hpy188I	TCNGA	6 cut(s)	50, 184, 365, 510, 892, 986
Hpy188III	TCNNGA	5 cut(s)	198, 261, 377, 497, 533
Hpy8I	GTNNAC	3 cut(s)	461, 548, 941
HpyCH4III	ACNGT	4 cut(s)	104, 552, 938, 976
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyCH4V	TGCA	7 cut(s)	158, 652, 764, 785, 818, 871, 883
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92II	CATG	3 cut(s)	545, 652, 713
Kzo9I	GATC	5 cut(s)	280, 299, 353, 373, 418
LweI	GCATC	3 cut(s)	145, 751, 805
MaeI	CTAG	2 cut(s)	516, 533
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	4 cut(s)	206, 438, 799, 841
MalI	GATC	5 cut(s)	282, 301, 355, 375, 420
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	5 cut(s)	280, 299, 353, 373, 418
MboII	GAAGA	6 cut(s)	102, 133, 244, 554, 605, 750
MflI	RGATCY	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	101, 194
MmeI	TCCRAC	2 cut(s)	120, 870
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	5 cut(s)	288, 674, 699, 729, 917
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	5 cut(s)	86, 152, 236, 371, 467
MspR9I	CCNGG	3 cut(s)	86, 87, 152
MwoI	GCNNNNNNNGC	1 cut(s)	761
NciI	CCSGG	3 cut(s)	86, 87, 152
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	5 cut(s)	280, 299, 353, 373, 418
NlaIII	CATG	3 cut(s)	545, 652, 713
NlaIV	GGNNCC	2 cut(s)	65, 220
NmuCI	GTSAC	1 cut(s)	799
NspI	RCATGY	1 cut(s)	652
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	51, 81, 132
PkrI	GCNGC	1 cut(s)	346
PleI	GAGTC	2 cut(s)	100, 193
PpsI	GAGTC	2 cut(s)	100, 193
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	65, 220
PspPI	GGNCC	5 cut(s)	63, 72, 361, 506, 821
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	5 cut(s)	288, 674, 699, 729, 917
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	5 cut(s)	280, 299, 353, 373, 418
Sau96I	GGNCC	5 cut(s)	63, 72, 361, 506, 821
SchI	GAGTC	2 cut(s)	101, 194
ScrFI	CCNGG	3 cut(s)	86, 87, 152
SfaNI	GCATC	3 cut(s)	145, 751, 805
SinI	GGWCC	4 cut(s)	63, 72, 361, 506
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	3 cut(s)	61, 345, 946
SspMI	CTAG	2 cut(s)	516, 533
StyD4I	CCNGG	3 cut(s)	84, 85, 150
TaaI	ACNGT	4 cut(s)	104, 552, 938, 976
TaiI	ACGT	2 cut(s)	141, 252
TasI	AATT	1 cut(s)	336
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	3 cut(s)	51, 81, 132
Tru1I	TTAA	5 cut(s)	288, 674, 699, 729, 917
Tru9I	TTAA	5 cut(s)	288, 674, 699, 729, 917
TscAI	CASTG	1 cut(s)	452
TseFI	GTSAC	1 cut(s)	799
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	4 cut(s)	96, 323, 554, 695
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	1 cut(s)	452
VpaK11BI	GGWCC	4 cut(s)	63, 72, 361, 506
XapI	RAATTY	1 cut(s)	336
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	652
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	516, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.