Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

6293621 .. 6297256

Gene Structure 3636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g04730.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAACCTCGTCCAAAGGGCAGCTCCAAGCCTCCCCAAGCTTTTCGGATTTGCCAAGAGGCCCTTCAAGTCCTTGAGATTCCCAGGGGAGCCCCTCGACTCTTCATCTTCTCTCCCCCCTCTCTCCTACGGAATCCACGTCTTCCATTGCCCCGATGCAGTTGGGATTGTGGCCAAGCTATCGGATTGCATTGCTTCTAAAGGCGGAAACATTCTCGGCGCCAGCATCTTCGTGCCCGAAAACAAGCACGTTTTTTATTCCAGAAGCGAATTTATTTTCGATCCTCTTAAATGGCCAAGAAAGGAAATGGATGAGGATTTCCATAAGCTGTCGTTAACATACTCTGCAATGAGATCTGTTGTCCGGGTTCCAAATCTTGACCCCAAGTATAAGATTGGTGTCCTTGTCTCAAAACAGGATCATTGCCTGGTTGATTTATTACATCAGTGGCAGGAAGGCAGGCTTCCAGTAGATATAACTTGTGTAATAAGTAATCATCATCGAGGTCCGAACACCCATGTGCATCGTTTTCTAGAAAGACACGGTATACCTTACCATTATCTAAATACAACCATGGATGACAAAAGAGAAGGGGAGATACTAGAGTTGGTTCAAAACACTGATTTTTTAGTTCTTGCCAGGTACATGCAGATATTATCCGGCGATTTTTTAAAGAGCTATGGAAAGGATATAATTAACATTCATCATGGCCTTTTGCCGTCATTCAAAGGTGGAAAACCATCTAAACAGGCTTTTGATGCAGGGGTGAAGCTTATTGGTGCAACAACTCATTTTGTGACGCAAGAACTTGATGCTGGGCCTATTATTGAACAGATGGTTGCGAGAGTTTCACACAGAGATAACTTGCAGACTTTTGTGCAGAAATCGGAGAACCTCGAAAAACAATGCCTAACGATGGCTATCAAGTCATACTGTGAGCTGCGAGTATTACCTTACGAGGATAACAAGACTGTTGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

328

Amino Acids

37.05

Weight (kDa)

8.61

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	2 cut(s)	275, 426
AcoI	YGGCCR	2 cut(s)	171, 293
AcsI	RAATTY	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	916
AgsI	TTSAA	4 cut(s)	67, 614, 727, 830
AjiI	CACGTC	1 cut(s)	139
AjnI	CCWGG	3 cut(s)	82, 426, 638
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	7 cut(s)	23, 40, 178, 328, 678, 772, 940
AluI	AGCT	7 cut(s)	23, 40, 178, 328, 678, 772, 940
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	275, 426
AoxI	GGCC	5 cut(s)	59, 171, 293, 709, 818
ApeKI	GCWGC	2 cut(s)	20, 940
ApoI	RAATTY	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	3 cut(s)	60, 506, 818
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	778
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	590, 623
BalI	TGGCCA	2 cut(s)	173, 295
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	2 cut(s)	32, 927
BccI	CCATC	3 cut(s)	748, 829, 910
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	3 cut(s)	84, 428, 640
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	533, 602
BfoI	RGCGCY	1 cut(s)	222
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	21, 941
BlsI	GCNGC	2 cut(s)	22, 942
Bme1390I	CCNGG	4 cut(s)	84, 365, 428, 640
Bme18I	GGWCC	1 cut(s)	506
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	3 cut(s)	60, 506, 818
BmiI	GGNNCC	3 cut(s)	90, 220, 369
BmrFI	CCNGG	4 cut(s)	84, 365, 428, 640
BmsI	GCATC	5 cut(s)	145, 234, 532, 748, 802
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	82, 83, 573
Bsc4I	CCNNNNNNNGG	1 cut(s)	916
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	4 cut(s)	145, 189, 354, 421
Bse8I	GATNNNNATC	1 cut(s)	920
BseBI	CCWGG	3 cut(s)	84, 428, 640
BseDI	CCNNGG	3 cut(s)	82, 83, 573
BseGI	GGATG	2 cut(s)	316, 583
BseJI	GATNNNNATC	1 cut(s)	920
BseLI	CCNNNNNNNGG	1 cut(s)	916
BseMI	GCAATG	4 cut(s)	145, 189, 354, 421
BseNI	ACTGG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	2 cut(s)	32, 927
BseYI	CCCAGC	1 cut(s)	815
BsgI	GTGCAG	1 cut(s)	899
BshFI	GGCC	5 cut(s)	61, 173, 295, 711, 820
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	364, 660
BslI	CCNNNNNNNGG	1 cut(s)	916
BsmAI	GTCTC	1 cut(s)	412
BsnI	GGCC	5 cut(s)	61, 173, 295, 711, 820
Bsp1286I	GDGCHC	2 cut(s)	93, 237
Bsp143I	GATC	3 cut(s)	280, 353, 418
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	5 cut(s)	61, 173, 295, 711, 820
BspLI	GGNNCC	3 cut(s)	90, 220, 369
BspPI	GGATC	2 cut(s)	275, 426
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	4 cut(s)	145, 189, 354, 421
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	3 cut(s)	82, 83, 573
BssMI	GATC	3 cut(s)	280, 353, 418
BssNAI	GTATAC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	573
Bst1107I	GTATAC	1 cut(s)	548
Bst2UI	CCWGG	3 cut(s)	84, 428, 640
Bst4CI	ACNGT	3 cut(s)	545, 935, 973
Bst6I	CTCTTC	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	223, 461
BstDSI	CCRYGG	1 cut(s)	573
BstF5I	GGATG	2 cut(s)	316, 583
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	283, 356, 421
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	3 cut(s)	280, 353, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	3 cut(s)	84, 428, 640
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	4 cut(s)	82, 363, 426, 638
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	2 cut(s)	32, 927
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	548
BsuRI	GGCC	5 cut(s)	61, 173, 295, 711, 820
BtgI	CCRYGG	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	316, 583
BtsIMutI	CAGTG	2 cut(s)	452, 618
Cac8I	GCNNGC	2 cut(s)	223, 461
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	3 cut(s)	60, 506, 818
CseI	GACGC	1 cut(s)	808
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	4 cut(s)	518, 574, 646, 707
CviQI	GTAC	1 cut(s)	643
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	3 cut(s)	282, 355, 420
DpnII	GATC	3 cut(s)	280, 353, 418
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	2 cut(s)	171, 293
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	82, 426, 638
EcoT14I	CCWWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	93
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	4 cut(s)	521, 577, 649, 710
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 447, 479
FatI	CATG	4 cut(s)	517, 573, 645, 706
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	21, 941
FokI	GGATG	2 cut(s)	323, 590
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	21, 941
FspBI	CTAG	2 cut(s)	533, 602
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	2 cut(s)	21, 941
GsaI	CCCAGC	1 cut(s)	819
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	5 cut(s)	61, 173, 295, 711, 820
HapII	CCGG	2 cut(s)	364, 660
HgaI	GACGC	1 cut(s)	808
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	4 cut(s)	521, 577, 649, 710
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	336
HindII	GTYRAC	1 cut(s)	336
HindIII	AAGCTT	2 cut(s)	38, 770
HinfI	GANTC	3 cut(s)	78, 98, 132
HpaI	GTTAAC	1 cut(s)	336
HpaII	CCGG	2 cut(s)	364, 660
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	2 cut(s)	336, 548
Hpy188I	TCNGA	4 cut(s)	47, 184, 510, 889
Hpy188III	TCNNGA	3 cut(s)	261, 377, 533
Hpy8I	GTNNAC	2 cut(s)	336, 548
HpyAV	CCTTC	3 cut(s)	73, 449, 584
HpyCH4III	ACNGT	3 cut(s)	545, 935, 973
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyCH4V	TGCA	9 cut(s)	158, 189, 347, 523, 649, 761, 782, 868, 880
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	521, 577, 649, 710
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	336
Kzo9I	GATC	3 cut(s)	280, 353, 418
LmnI	GCTCC	2 cut(s)	28, 88
Lsp1109I	GCAGC	2 cut(s)	32, 927
LweI	GCATC	5 cut(s)	145, 234, 532, 748, 802
MaeI	CTAG	2 cut(s)	533, 602
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	1 cut(s)	796
MalI	GATC	3 cut(s)	282, 355, 420
MboI	GATC	3 cut(s)	280, 353, 418
MboII	GAAGA	4 cut(s)	93, 99, 133, 220
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	93, 237
MlsI	TGGCCA	2 cut(s)	173, 295
MluCI	AATT	2 cut(s)	269, 693
MluNI	TGGCCA	2 cut(s)	173, 295
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	92
Mox20I	TGGCCA	2 cut(s)	173, 295
MscI	TGGCCA	2 cut(s)	173, 295
MseI	TTAA	4 cut(s)	288, 335, 671, 696
MslI	CAYNNNNRTG	2 cut(s)	230, 518
Msp20I	TGGCCA	2 cut(s)	173, 295
MspI	CCGG	2 cut(s)	364, 660
MspR9I	CCNGG	4 cut(s)	84, 365, 428, 640
MvaI	CCWGG	3 cut(s)	84, 428, 640
MwoI	GCNNNNNNNGC	1 cut(s)	758
NarI	GGCGCC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	365
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	3 cut(s)	280, 353, 418
NlaIII	CATG	4 cut(s)	521, 577, 649, 710
NlaIV	GGNNCC	3 cut(s)	90, 220, 369
NmeAIII	GCCGAG	1 cut(s)	195
NmuCI	GTSAC	1 cut(s)	796
NspI	RCATGY	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	518
PasI	CCCWGGG	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	78, 132
PkrI	GCNGC	2 cut(s)	22, 942
PleI	GAGTC	1 cut(s)	92
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	3 cut(s)	82, 426, 638
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	3 cut(s)	82, 426, 638
PspN4I	GGNNCC	3 cut(s)	90, 220, 369
PspPI	GGNCC	3 cut(s)	60, 506, 818
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
RseI	CAYNNNNRTG	2 cut(s)	230, 518
SaqAI	TTAA	4 cut(s)	288, 335, 671, 696
SatI	GCNGC	2 cut(s)	21, 941
Sau3AI	GATC	3 cut(s)	280, 353, 418
Sau96I	GGNCC	3 cut(s)	60, 506, 818
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	84, 365, 428, 640
SduI	GDGCHC	2 cut(s)	93, 237
SfaNI	GCATC	5 cut(s)	145, 234, 532, 748, 802
SfoI	GGCGCC	1 cut(s)	220
SinI	GGWCC	1 cut(s)	506
SmiMI	CAYNNNNRTG	2 cut(s)	230, 518
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	269, 693
SsiI	CCGC	1 cut(s)	204
SspDI	GGCGCC	1 cut(s)	218
SspMI	CTAG	2 cut(s)	533, 602
StyD4I	CCNGG	4 cut(s)	82, 363, 426, 638
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	545, 935, 973
TaiI	ACGT	2 cut(s)	141, 252
TaqI	TCGA	4 cut(s)	96, 279, 502, 897
TasI	AATT	2 cut(s)	269, 693
TfiI	GAWTC	2 cut(s)	78, 132
Tru1I	TTAA	4 cut(s)	288, 335, 671, 696
Tru9I	TTAA	4 cut(s)	288, 335, 671, 696
TscAI	CASTG	2 cut(s)	452, 625
TseFI	GTSAC	1 cut(s)	796
TseI	GCWGC	2 cut(s)	20, 940
Tsp45I	GTSAC	1 cut(s)	796
TspDTI	ATGAA	3 cut(s)	17, 93, 692
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	2 cut(s)	452, 625
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	533, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.