Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

13179377 .. 13183242

Gene Structure 3866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCCAAGCTTTCGGAGTCCATTGCTTCTAGAGGAGGTACCATACTCGCTGCCAATGTGTTTGTGCCTGAAAACAAGGACGTCTTCTATTCCAGAAGGTCACAAATGAATGAGGATTTCAGTAAGCTATCACAAATGTACGCCGTGCATAGATCTGTGGTCCGAGTGCCAGATCAAGACCCAAAATATAAGATTGGTGTCCTTGCGTCAAAGCAGGATCATTGCCTGATTGATTTGCTACATCAGTGGCAGGATGGAAAACTACCATTAGATATAGCTTGTGTAATAAGTAATCACGAGAGGGGTCCAAACACTGGTGTGTGTCGGTTTCTAGAAAGACATGGTATACCGTATCATTATCTTCACACGACCAAAGAGAATAAAAGAGAAGAGGAAATATTGGAGTTGGTTCAAGATACCGACTTTTTAGTCCTTGCGAGGTACATGCAGGTAATCAGGCTATGGATTCTATATATAATCTCACCATTTCAAACTGCATTGCTGAAGAAGTTTGCAGTACTAACCGGAGGAAATAGCTTCTCCCTGTTCTTCAGTTGTAGAAATCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

190

Amino Acids

21.88

Weight (kDa)

8.66

Isoelectric Point (pI)

57.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	428
AatII	GACGTC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	439
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	524, 535
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	4 cut(s)	40, 140, 443, 519
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	413, 491
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	4 cut(s)	10, 127, 278, 537
AluI	AGCT	4 cut(s)	10, 127, 278, 537
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	160, 305
AsuHPI	GGTGA	1 cut(s)	474
AvaII	GGWCC	2 cut(s)	160, 305
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BfaI	CTAG	2 cut(s)	30, 332
BfuAI	ACCTGC	1 cut(s)	439
BglII	AGATCT	1 cut(s)	152
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
BmcAI	AGTACT	1 cut(s)	519
Bme18I	GGWCC	2 cut(s)	160, 305
BmgT120I	GGNCC	2 cut(s)	160, 305
BmiI	GGNNCC	2 cut(s)	40, 306
BpiI	GAAGAC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	3 cut(s)	21, 220, 497
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	3 cut(s)	21, 220, 497
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	38
BsiSI	CCGG	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	314
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	152, 172, 217
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	40, 306
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	3 cut(s)	21, 220, 497
BsrI	ACTGG	1 cut(s)	319
BssMI	GATC	3 cut(s)	152, 172, 217
BssNAI	GTATAC	1 cut(s)	347
BssNI	GRCGYC	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	347
Bst2BI	CACGAG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	155, 175, 220
BstMBI	GATC	3 cut(s)	152, 172, 217
BstNSI	RCATGY	1 cut(s)	448
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BstZ17I	GTATAC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	2 cut(s)	251, 312
BveI	ACCTGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	160, 305
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	39, 139, 442, 518
CviAII	CATG	2 cut(s)	341, 445
CviJI	RGCY	6 cut(s)	5, 10, 127, 278, 460, 537
CviKI_1	RGCY	6 cut(s)	5, 10, 127, 278, 460, 537
CviQI	GTAC	4 cut(s)	39, 139, 442, 518
DpnI	GATC	3 cut(s)	154, 174, 219
DpnII	GATC	3 cut(s)	152, 172, 217
DrdI	GACNNNNNNGTC	1 cut(s)	428
DseDI	GACNNNNNNGTC	1 cut(s)	428
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	160, 305
Eco57I	CTGAAG	2 cut(s)	524, 535
FaeI	CATG	2 cut(s)	344, 448
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	340, 444
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	30, 332
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	525
HgaI	GACGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	2 cut(s)	344, 448
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	17, 466
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	1 cut(s)	474
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	16, 164
Hpy188III	TCNNGA	6 cut(s)	30, 93, 176, 296, 332, 413
Hpy8I	GTNNAC	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	4 cut(s)	148, 448, 497, 515
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	344, 448
KpnI	GGTACC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	152, 172, 217
Lsp1109I	GCAGC	1 cut(s)	37
MaeI	CTAG	2 cut(s)	30, 332
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	3 cut(s)	154, 174, 219
MboI	GATC	3 cut(s)	152, 172, 217
MboII	GAAGA	5 cut(s)	76, 353, 401, 517, 541
MflI	RGATCY	1 cut(s)	152
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	7 cut(s)	26, 29, 106, 294, 385, 432, 521
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	152, 172, 217
NlaIII	CATG	2 cut(s)	344, 448
NlaIV	GGNNCC	2 cut(s)	40, 306
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	448
OliI	CACNNNNGTG	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PspN4I	GGNNCC	2 cut(s)	40, 306
PspPI	GGNCC	2 cut(s)	160, 305
PsuI	RGATCY	1 cut(s)	152
RsaI	GTAC	4 cut(s)	40, 140, 443, 519
RsaNI	GTAC	4 cut(s)	39, 139, 442, 518
RseI	CAYNNNNRTG	1 cut(s)	317
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	3 cut(s)	152, 172, 217
Sau96I	GGNCC	2 cut(s)	160, 305
ScaI	AGTACT	1 cut(s)	519
SchI	GAGTC	1 cut(s)	26
SetI	ASST	9 cut(s)	12, 40, 84, 101, 129, 280, 443, 453, 539
SinI	GGWCC	2 cut(s)	160, 305
SmiMI	CAYNNNNRTG	1 cut(s)	317
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	2 cut(s)	30, 332
TaaI	ACNGT	1 cut(s)	351
TaiI	ACGT	1 cut(s)	84
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	466
TscAI	CASTG	2 cut(s)	251, 319
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	251, 319
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	160, 305
XbaI	TCTAGA	2 cut(s)	29, 331
XceI	RCATGY	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	2 cut(s)	30, 332
ZraI	GACGTC	1 cut(s)	82
ZrmI	AGTACT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.