Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

8145518 .. 8148885

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G067100.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGCCTTGTCCAAAGAGCCTCTCCAAGCCTCCCCAAGCTTTTTGGATTTGCAAAGAGGTCCTTCAAGTCCTTGAGATTTCCGGGTGAGCCCCTCGACCCTTCGTCTTCTCCCATCCTCTCCTACGGAATCCATGTCTTCCATGCCCCCGATGCAGTTGGGATTGTGGCCAAGCTCTCGGATTGCATTGCTTCTAAAGGTGGAAACATACTCGGTGCCAGTGTCTTCGTGCCCGAAAACAAGCACGTCTTCTATTCCAGAAGTGAATTTATTTTCGATCCCATTAAATGGCCAAGATCGGAAATGGATGAGGATTTCCGTAAGCTGTTGACAACATACTCTGCGATGAGATCTGTTGTCCGGGTTCCAGATCACGACCCCAAGTATAAGATTTGTATCCTTGCCTCAAAGCAGGATCATTGTTTGGTTGATTTGTTACATCAGTGGCAGGAAGGCAGACTTCCAGTAGACATAACTTGTGTTATAAGTAATCATGATAGAGGTCCAAACACCCATGTGTCTCGCTTTCTTGAAAGACATGGTATACCTTATCATTATCTGCAAACAACCAACACTGACAAAAGAGAAGGGGAGATATTGGAGTTGGTTCAAAATACTGATTTTTTAGTTCTTGCCAGGTACATGCAGTTATTATCTGGCGATTTTTTGAAGAGCTACGGAAAGGATGTAATTAACATTCATCATGGCCTTTTGCCATCATTCAAGGGTGGAAAACCATCTAAACAGGCTTTTGATGCAGGGGTGAAACTTATTGGTGCAACAAGTCATTTTGTCACCCAAGAACTCGATGCTGGTCCTATTATTGAACAGATGGTTGCAAGAGTTTCACACAGAGATAACTTGCAGAGTTTTGTGCAGAAGTCAGAGAACCTCGAAAAACAATGCCTTACGAAGGCAATCAAATCGTACTGTGAGCTGCGAGTGTTACCTTATGAGGATAACAAGACTGTTGTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

327

Amino Acids

36.81

Weight (kDa)

8.61

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	215
AccB7I	CCANNNNNTGG	1 cut(s)	288
AccI	GTMKAC	2 cut(s)	468, 544
AclWI	GGATC	2 cut(s)	272, 423
AcoI	YGGCCR	2 cut(s)	168, 290
AcsI	RAATTY	1 cut(s)	266
AfaI	GTAC	2 cut(s)	641, 929
AfiI	CCNNNNNNNGG	2 cut(s)	288, 913
AgsI	TTSAA	6 cut(s)	67, 533, 611, 670, 724, 827
AhdI	GACNNNNNGTC	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	635
AleI	CACNNNNGTG	1 cut(s)	515
AluBI	AGCT	5 cut(s)	40, 175, 325, 675, 937
AluI	AGCT	5 cut(s)	40, 175, 325, 675, 937
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	2 cut(s)	272, 423
AoxI	GGCC	3 cut(s)	168, 290, 706
ApeKI	GCWGC	1 cut(s)	937
ApoI	RAATTY	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	60, 503, 815
AsuC2I	CCSGG	2 cut(s)	84, 362
AsuHPI	GGTGA	3 cut(s)	98, 775, 787
AvaII	GGWCC	3 cut(s)	60, 503, 815
BaeGI	GKGCMC	1 cut(s)	234
BalI	TGGCCA	2 cut(s)	170, 292
BanI	GGYRCC	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	4 cut(s)	99, 130, 217, 241
BbvI	GCAGC	1 cut(s)	924
BccI	CCATC	4 cut(s)	122, 724, 745, 826
BcgI	CGANNNNNNTGC	2 cut(s)	906, 940
BciT130I	CCWGG	1 cut(s)	637
BciVI	GTATCC	1 cut(s)	407
BcnI	CCSGG	2 cut(s)	84, 362
BcoDI	GTCTC	1 cut(s)	525
BfuI	GTATCC	1 cut(s)	407
BglII	AGATCT	1 cut(s)	350
BisI	GCNGC	1 cut(s)	938
BlsI	GCNGC	1 cut(s)	939
Bme1390I	CCNGG	3 cut(s)	84, 362, 637
Bme18I	GGWCC	3 cut(s)	60, 503, 815
BmeRI	GACNNNNNGTC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	3 cut(s)	60, 503, 815
BmiI	GGNNCC	2 cut(s)	217, 366
BmrFI	CCNGG	3 cut(s)	84, 362, 637
BmsI	GCATC	3 cut(s)	142, 745, 799
BpiI	GAAGAC	4 cut(s)	99, 130, 217, 241
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	2 cut(s)	84, 362
BsaBI	GATNNNNATC	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 913
Bse1I	ACTGG	2 cut(s)	219, 464
Bse3DI	GCAATG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	637
BseGI	GGATG	3 cut(s)	114, 313, 691
BseJI	GATNNNNATC	1 cut(s)	395
BseLI	CCNNNNNNNGG	2 cut(s)	288, 913
BseMI	GCAATG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	219, 464
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	924
BsgI	GTGCAG	1 cut(s)	896
BshFI	GGCC	3 cut(s)	170, 292, 708
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	83, 361
BslI	CCNNNNNNNGG	2 cut(s)	288, 913
BsmAI	GTCTC	1 cut(s)	525
BsnI	GGCC	3 cut(s)	170, 292, 708
Bsp1286I	GDGCHC	2 cut(s)	93, 234
Bsp143I	GATC	5 cut(s)	277, 296, 350, 370, 415
BspANI	GGCC	3 cut(s)	170, 292, 708
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	217, 366
BspPI	GGATC	2 cut(s)	272, 423
BspQI	GCTCTTC	1 cut(s)	665
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	219, 464
BssMI	GATC	5 cut(s)	277, 296, 350, 370, 415
BssNAI	GTATAC	1 cut(s)	545
Bst1107I	GTATAC	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	2 cut(s)	932, 970
Bst6I	CTCTTC	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	911
BstF5I	GGATG	3 cut(s)	114, 313, 691
BstKTI	GATC	5 cut(s)	280, 299, 353, 373, 418
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	5 cut(s)	277, 296, 350, 370, 415
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 755
BstNI	CCWGG	1 cut(s)	637
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	82, 360, 635
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	924
BstV2I	GAAGAC	4 cut(s)	99, 130, 217, 241
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BstZ17I	GTATAC	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	3 cut(s)	170, 292, 708
BtgZI	GCGATG	1 cut(s)	359
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	114, 313, 691
BtsIMutI	CAGTG	3 cut(s)	226, 449, 573
CciI	TCATGA	1 cut(s)	493
Cfr13I	GGNCC	3 cut(s)	60, 503, 815
Csp6I	GTAC	2 cut(s)	640, 928
CviAII	CATG	7 cut(s)	134, 143, 494, 515, 539, 643, 704
CviQI	GTAC	2 cut(s)	640, 928
DpnI	GATC	5 cut(s)	279, 298, 352, 372, 417
DpnII	GATC	5 cut(s)	277, 296, 350, 370, 415
DriI	GACNNNNNGTC	1 cut(s)	103
EaeI	YGGCCR	2 cut(s)	168, 290
Eam1104I	CTCTTC	1 cut(s)	665
Eam1105I	GACNNNNNGTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	665
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	3 cut(s)	60, 503, 815
EcoNI	CCTNNNNNAGG	1 cut(s)	911
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	635
EcoT38I	GRGCYC	1 cut(s)	93
FaeI	CATG	7 cut(s)	137, 146, 497, 518, 542, 646, 707
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 233, 265, 444, 476
FatI	CATG	7 cut(s)	133, 142, 493, 514, 538, 642, 703
FblI	GTMKAC	2 cut(s)	468, 544
Fnu4HI	GCNGC	1 cut(s)	938
FokI	GGATG	3 cut(s)	101, 320, 698
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	938
GluI	GCNGC	1 cut(s)	938
HaeIII	GGCC	3 cut(s)	170, 292, 708
HapII	CCGG	2 cut(s)	83, 361
Hin1II	CATG	7 cut(s)	137, 146, 497, 518, 542, 646, 707
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	83, 361
HphI	GGTGA	3 cut(s)	98, 775, 787
Hpy166II	GTNNAC	3 cut(s)	330, 469, 545
Hpy188I	TCNGA	3 cut(s)	181, 301, 886
Hpy188III	TCNNGA	5 cut(s)	258, 368, 374, 494, 530
Hpy8I	GTNNAC	3 cut(s)	330, 469, 545
HpyAV	CCTTC	5 cut(s)	73, 111, 446, 581, 907
HpyCH4III	ACNGT	2 cut(s)	932, 970
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 755
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	7 cut(s)	137, 146, 497, 518, 542, 646, 707
Kzo9I	GATC	5 cut(s)	277, 296, 350, 370, 415
LguI	GCTCTTC	1 cut(s)	665
Lsp1109I	GCAGC	1 cut(s)	924
LweI	GCATC	3 cut(s)	142, 745, 799
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	435, 793, 945
MalI	GATC	5 cut(s)	279, 298, 352, 372, 417
MboI	GATC	5 cut(s)	277, 296, 350, 370, 415
MboII	GAAGA	5 cut(s)	99, 130, 217, 241, 682
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	93, 234
MlsI	TGGCCA	2 cut(s)	170, 292
MluCI	AATT	2 cut(s)	266, 690
MluNI	TGGCCA	2 cut(s)	170, 292
Mox20I	TGGCCA	2 cut(s)	170, 292
MscI	TGGCCA	2 cut(s)	170, 292
MseI	TTAA	2 cut(s)	285, 693
MslI	CAYNNNNRTG	1 cut(s)	515
Msp20I	TGGCCA	2 cut(s)	170, 292
MspI	CCGG	2 cut(s)	83, 361
MspR9I	CCNGG	3 cut(s)	84, 362, 637
MvaI	CCWGG	1 cut(s)	637
MwoI	GCNNNNNNNGC	2 cut(s)	152, 755
NciI	CCSGG	2 cut(s)	84, 362
NdeII	GATC	5 cut(s)	277, 296, 350, 370, 415
NlaIII	CATG	7 cut(s)	137, 146, 497, 518, 542, 646, 707
NlaIV	GGNNCC	2 cut(s)	217, 366
NmuCI	GTSAC	1 cut(s)	793
NspI	RCATGY	1 cut(s)	646
OliI	CACNNNNGTG	1 cut(s)	515
PagI	TCATGA	1 cut(s)	493
PciSI	GCTCTTC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	129
PflMI	CCANNNNNTGG	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	939
PpuMI	RGGWCCY	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	485
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	635
PspN4I	GGNNCC	2 cut(s)	217, 366
PspPI	GGNCC	3 cut(s)	60, 503, 815
PspPPI	RGGWCCY	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	2 cut(s)	641, 929
RsaNI	GTAC	2 cut(s)	640, 928
RseI	CAYNNNNRTG	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	2 cut(s)	285, 693
SatI	GCNGC	1 cut(s)	938
Sau3AI	GATC	5 cut(s)	277, 296, 350, 370, 415
Sau96I	GGNCC	3 cut(s)	60, 503, 815
ScrFI	CCNGG	3 cut(s)	84, 362, 637
SduI	GDGCHC	2 cut(s)	93, 234
SfaNI	GCATC	3 cut(s)	142, 745, 799
SinI	GGWCC	3 cut(s)	60, 503, 815
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	2 cut(s)	266, 690
StyD4I	CCNGG	3 cut(s)	82, 360, 635
TaaI	ACNGT	2 cut(s)	932, 970
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	96, 276, 807, 894
TasI	AATT	2 cut(s)	266, 690
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	2 cut(s)	285, 693
Tru9I	TTAA	2 cut(s)	285, 693
TscAI	CASTG	3 cut(s)	226, 449, 580
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	1 cut(s)	937
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	1 cut(s)	689
TspGWI	ACGGA	3 cut(s)	141, 308, 693
TspRI	CASTG	3 cut(s)	226, 449, 580
Van91I	CCANNNNNTGG	1 cut(s)	288
VpaK11BI	GGWCC	3 cut(s)	60, 503, 815
XagI	CCTNNNNNAGG	1 cut(s)	911
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	2 cut(s)	468, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.