Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019220.1

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

19641 .. 21329

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019220.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggctctcgtccacagagcctcaccaaaacgcctccccaaacttttcggatttgcaaaacggtccatcaggtccttgagattcccgggtgagccccccgactgttcatcttctccaactctcgcttatggaatccacgtcttccattgcccggacgcagttgggattgtggccaagctttcggagtccattgcttctagaggaggtaacatactcgctgccaatgtgtttgtgcctgaaaacaaggacgtcttctattccagaagtgagtttatttttgatcctgttaaatggacaagatcacaaatgaatgaggatttcaataagctatcacaaatgtacgccgctcatagatctgtggtccgagtgccagatcaagacccgaaatataagattggtgtccttgcgtcaaagcaggatcattgcctgattgatttgctacatcagtggcaggatggaaaactaccattagatatagcttgtgtaataagtaatcacgagaggggtccaaacactggtgtgtgtcggtttctagaaagacatggtataccgtatcattatcttcacacgaccaaagagaataaaagagaagaggaaatattggagttggttcaagataccgactttttagtccttgcgaggtacatgcaggcttttgatgcaggggtgaagcttattggtgcaacaactcattttgtgacccaagaacttgatgcagggcctattatcgaacagatggtagtcagtctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

250

Amino Acids

28.2

Weight (kDa)

7.17

Isoelectric Point (pI)

59.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	629
AatII	GACGTC	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	275, 426
AcoI	YGGCCR	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	341, 644
AfiI	CCNNNNNNNGG	2 cut(s)	151, 515
AgsI	TTSAA	2 cut(s)	322, 614
AjiI	CACGTC	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	518
AluBI	AGCT	4 cut(s)	178, 328, 479, 673
AluI	AGCT	4 cut(s)	178, 328, 479, 673
AlwI	GGATC	2 cut(s)	275, 426
Ama87I	CYCGRG	1 cut(s)	85
AoxI	GGCC	2 cut(s)	171, 719
ApeKI	GCWGC	1 cut(s)	218
AspS9I	GGNCC	5 cut(s)	63, 72, 361, 506, 719
AsuC2I	CCSGG	3 cut(s)	86, 87, 152
AsuHPI	GGTGA	3 cut(s)	15, 101, 679
AvaI	CYCGRG	1 cut(s)	85
AvaII	GGWCC	4 cut(s)	63, 72, 361, 506
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	497
BbsI	GAAGAC	2 cut(s)	133, 244
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	3 cut(s)	74, 449, 730
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BcnI	CCSGG	3 cut(s)	86, 87, 152
BfaI	CTAG	2 cut(s)	198, 533
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	2 cut(s)	219, 345
BlsI	GCNGC	2 cut(s)	220, 346
Bme1390I	CCNGG	3 cut(s)	86, 87, 152
Bme18I	GGWCC	4 cut(s)	63, 72, 361, 506
BmeT110I	CYCGRG	1 cut(s)	85
BmgBI	CACGTC	1 cut(s)	139
BmgT120I	GGNCC	5 cut(s)	63, 72, 361, 506, 719
BmiI	GGNNCC	1 cut(s)	507
BmrFI	CCNGG	3 cut(s)	86, 87, 152
BmsI	GCATC	2 cut(s)	649, 703
BpiI	GAAGAC	2 cut(s)	133, 244
BpuEI	CTTGAG	1 cut(s)	97
BpuMI	CCSGG	3 cut(s)	86, 87, 152
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 515
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	3 cut(s)	145, 189, 421
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	151, 515
BseMI	GCAATG	3 cut(s)	145, 189, 421
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	1 cut(s)	216
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	173, 721
BsiHKCI	CYCGRG	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	86, 152
BslI	CCNNNNNNNGG	2 cut(s)	151, 515
BsnI	GGCC	2 cut(s)	173, 721
BsoBI	CYCGRG	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	280, 299, 353, 373, 418
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	2 cut(s)	173, 721
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	2 cut(s)	275, 426
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	3 cut(s)	145, 189, 421
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	5 cut(s)	280, 299, 353, 373, 418
BssNAI	GTATAC	1 cut(s)	548
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	548
Bst2BI	CACGAG	1 cut(s)	497
Bst4CI	ACNGT	3 cut(s)	63, 104, 552
Bst6I	CTCTTC	1 cut(s)	585
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	5 cut(s)	283, 302, 356, 376, 421
BstMBI	GATC	5 cut(s)	280, 299, 353, 373, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	3 cut(s)	84, 85, 150
BstV1I	GCAGC	1 cut(s)	205
BstV2I	GAAGAC	2 cut(s)	133, 244
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	548
BsuRI	GGCC	2 cut(s)	173, 721
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	452, 513
Cac8I	GCNNGC	1 cut(s)	651
Cfr13I	GGNCC	5 cut(s)	63, 72, 361, 506, 719
Cfr9I	CCCGGG	1 cut(s)	85
CseI	GACGC	2 cut(s)	164, 396
Csp6I	GTAC	2 cut(s)	340, 643
CviAII	CATG	2 cut(s)	542, 646
CviQI	GTAC	2 cut(s)	340, 643
DpnI	GATC	5 cut(s)	282, 301, 355, 375, 420
DpnII	GATC	5 cut(s)	280, 299, 353, 373, 418
DrdI	GACNNNNNNGTC	1 cut(s)	629
DseDI	GACNNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	1 cut(s)	585
EarI	CTCTTC	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	63, 72, 361, 506
Eco88I	CYCGRG	1 cut(s)	85
EcoO109I	RGGNCCY	2 cut(s)	72, 719
EcoT38I	GRGCYC	1 cut(s)	96
FaeI	CATG	2 cut(s)	545, 649
FaiI	YATR	8 cut(s)	129, 212, 351, 390, 476, 543, 548, 647
FalI	AAGNNNNNCTT	2 cut(s)	236, 268
FatI	CATG	2 cut(s)	541, 645
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	219, 345
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	219, 345
FspBI	CTAG	2 cut(s)	198, 533
GluI	GCNGC	2 cut(s)	219, 345
HaeIII	GGCC	2 cut(s)	173, 721
HapII	CCGG	2 cut(s)	86, 152
HgaI	GACGC	2 cut(s)	164, 396
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	545, 649
HindIII	AAGCTT	2 cut(s)	176, 671
HinfI	GANTC	3 cut(s)	81, 132, 185
HpaII	CCGG	2 cut(s)	86, 152
HphI	GGTGA	3 cut(s)	15, 101, 679
Hpy166II	GTNNAC	2 cut(s)	13, 548
Hpy188I	TCNGA	3 cut(s)	50, 184, 365
Hpy188III	TCNNGA	6 cut(s)	198, 261, 377, 497, 533, 614
Hpy8I	GTNNAC	2 cut(s)	13, 548
HpyCH4III	ACNGT	3 cut(s)	63, 104, 552
HpyCH4IV	ACGT	2 cut(s)	138, 249
HpyCH4V	TGCA	5 cut(s)	56, 649, 662, 683, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpySE526I	ACGT	2 cut(s)	138, 249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	545, 649
Kzo9I	GATC	5 cut(s)	280, 299, 353, 373, 418
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	649, 703
MaeI	CTAG	2 cut(s)	198, 533
MaeII	ACGT	2 cut(s)	138, 249
MaeIII	GTNAC	2 cut(s)	206, 697
MalI	GATC	5 cut(s)	282, 301, 355, 375, 420
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	5 cut(s)	280, 299, 353, 373, 418
MboII	GAAGA	5 cut(s)	102, 133, 244, 554, 602
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	8 cut(s)	31, 44, 194, 197, 307, 495, 586, 633
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	518
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	2 cut(s)	86, 152
MspR9I	CCNGG	3 cut(s)	86, 87, 152
MwoI	GCNNNNNNNGC	1 cut(s)	659
NciI	CCSGG	3 cut(s)	86, 87, 152
NdeII	GATC	5 cut(s)	280, 299, 353, 373, 418
NlaIII	CATG	2 cut(s)	545, 649
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	697
NspI	RCATGY	1 cut(s)	649
OliI	CACNNNNGTG	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	81, 132
PflMI	CCANNNNNTGG	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	220, 346
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	5 cut(s)	63, 72, 361, 506, 719
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	2 cut(s)	341, 644
RsaNI	GTAC	2 cut(s)	340, 643
RseI	CAYNNNNRTG	1 cut(s)	518
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	2 cut(s)	219, 345
Sau3AI	GATC	5 cut(s)	280, 299, 353, 373, 418
Sau96I	GGNCC	5 cut(s)	63, 72, 361, 506, 719
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	86, 87, 152
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	9 cut(s)	74, 141, 180, 208, 252, 330, 481, 644, 675
SfaNI	GCATC	2 cut(s)	649, 703
SinI	GGWCC	4 cut(s)	63, 72, 361, 506
SmaI	CCCGGG	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	518
SmlI	CTYRAG	1 cut(s)	76
SmoI	CTYRAG	1 cut(s)	76
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	600
SspMI	CTAG	2 cut(s)	198, 533
StyD4I	CCNGG	3 cut(s)	84, 85, 150
TaaI	ACNGT	3 cut(s)	63, 104, 552
TaiI	ACGT	2 cut(s)	141, 252
TaqI	TCGA	1 cut(s)	729
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	81, 132
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	452, 520
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	2 cut(s)	96, 323
TspMI	CCCGGG	1 cut(s)	85
TspRI	CASTG	2 cut(s)	452, 520
Van91I	CCANNNNNTGG	1 cut(s)	515
VpaK11BI	GGWCC	4 cut(s)	63, 72, 361, 506
XbaI	TCTAGA	2 cut(s)	197, 532
XceI	RCATGY	1 cut(s)	649
XmaI	CCCGGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	198, 533
ZraI	GACGTC	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.