Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002503

Physical Location & Seq

Genomic Coordinates Forward (+)

19241672 .. 19243988

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47435.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATACGACGAATCACCGAGAGAGCTTCTGGTTTCGCTAAGAATATTCCGATTCTCAAATCGTCTCGATTTCACGGCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATTCCCGGCGTCCATGTCTTCCATTGTCAGGATGCTGTTGGGATTGTAGCTAAACTATCAGATTGCATAGCAGCAAAAGGTGGCAACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTTCTACTCTCGCAGCGAGTTTATCTTTGATCCGGTTAAATGGCCGAGAAGCCAAGTGGATGAAGATTTTCAAACTATTGCACAAAGATACGGTGCCTTGAATTCAGTTGTGCGTGTGCCTTCTATTGATCCTAAGTATAAGATAGCTCTTCTTCTTTCAAAACAGGATCATTGTCTTGTCGAAATGTTGCATAAATGGCAGGACGGGAAACTCCCTGTGGATATTACCTGTGTGATAAGCAATCATGAAAGAGCTTCAAACACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATCCCTTATCATTATGTATCTACAACTAAAGAGAATAAAAGAGAAGATGATATTTTGGAATTGGTTAAGGACACTGATTTCCTAGTTCTTGCTAGATATATGCAGATTTTATCGGGTAACTTTTTGAAAGGTTATGGAAAGGATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAGGGTGGATATCCCGCAAAACAGGCATTCGACGCTGGTGTGAAACTAATTGGAGCCACTAGTCACTTTGTTACCGAGGAACTTGATTCAGGGCCAATTATTGAACAAATGGTTGAGAGTGTTTCCCACCGAGACAACTTAAGGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGCCTCACGAGAGCTATAAAATCTTACTGCGAACTAAGGGTATTACCTTATGGTACAAACAAGACTGTTGTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0009853 GO:0009987 GO:0019752 GO:0034641 GO:0042558 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046653 GO:0051186 GO:0071704 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00630 ko00670 map00630 map00670

Pfam Domains

Protein Families

Formyl_trans_N

Protein Analysis

323

Amino Acids

36.45

Weight (kDa)

8.13

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Formyl_trans_N	PF00551	127 - 304	2e-34	Formyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17360 AT4G17360 AT4G17360 AT5G47435 AT5G47435
fragaria_vesca	FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130 FvH4_5g19130
malus_domestica	MD06G1056700.v1.1
prunus_persica	Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1 Prupe.5G067100_v2.0.a1
pyrus_communis	pycom06g04730
rosa_chinensis	RchiOBHm_Chr7g0203621
rosa_laevigata	RLG00000003514
rosa_multiflora	Rmu_sc0010675.1_g000002 Rmu_sc0019220.1_g000003
rosa_roxburghii	Rroxscaffold_3G00253640
rosa_rugosa	Rorug07G0077400 Rorug07G0077500 Rorug07G0077500 Rorug07G0077600 Rorug07G0077700 Rorug07G0077800
rosa_samantha	Rh6BG117400 Rh6CG115800 Rh6DG104200 Rh7AG207200 Rh7BG206600 Rh7CG219700 Rh7DG214300
rosa_wichuraiana	Rw7G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	2 cut(s)	514, 729
AclWI	GGATC	3 cut(s)	263, 362, 414
AcoI	YGGCCR	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	949
AfiI	CCNNNNNNNGG	1 cut(s)	139
AflII	CTTAAG	1 cut(s)	853
AgsI	TTSAA	6 cut(s)	311, 340, 399, 498, 661, 818
AhlI	ACTAGT	1 cut(s)	773
AluBI	AGCT	6 cut(s)	26, 161, 386, 494, 861, 908
AluI	AGCT	6 cut(s)	26, 161, 386, 494, 861, 908
Alw26I	GTCTC	4 cut(s)	69, 103, 704, 840
AlwI	GGATC	3 cut(s)	263, 362, 414
AoxI	GGCC	2 cut(s)	281, 806
ApeKI	GCWGC	2 cut(s)	182, 252
ApoI	RAATTY	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	806, 880
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	880
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	901
BbsI	GAAGAC	2 cut(s)	121, 232
BbvI	GCAGC	2 cut(s)	194, 264
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	4 cut(s)	69, 103, 704, 840
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	5 cut(s)	617, 627, 774, 884, 970
BfrI	CTTAAG	1 cut(s)	853
BisI	GCNGC	2 cut(s)	183, 253
BlsI	GCNGC	2 cut(s)	184, 254
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	880
BmgT120I	GGNCC	2 cut(s)	806, 880
BmiI	GGNNCC	2 cut(s)	334, 769
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	2 cut(s)	133, 543
BpiI	GAAGAC	2 cut(s)	121, 232
BpuEI	CTTGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	120
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	694, 789, 876
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	694, 789, 876
BseGI	GGATG	5 cut(s)	148, 304, 534, 682, 687
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseXI	GCAGC	2 cut(s)	194, 264
BshFI	GGCC	2 cut(s)	283, 808
BshNI	GGYRCC	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	117, 272
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	4 cut(s)	69, 103, 704, 840
BsmBI	CGTCTC	2 cut(s)	69, 103
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	283, 808
Bso31I	GGTCTC	1 cut(s)	704
Bsp143I	GATC	3 cut(s)	268, 367, 406
Bsp19I	CCATGG	1 cut(s)	694
BspACI	CCGC	2 cut(s)	514, 729
BspANI	GGCC	2 cut(s)	283, 808
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	334, 769
BspPI	GGATC	3 cut(s)	263, 362, 414
BspQI	GCTCTTC	1 cut(s)	393
BspT107I	GGYRCC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	704
BssECI	CCNNGG	3 cut(s)	694, 789, 876
BssMI	GATC	3 cut(s)	268, 367, 406
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	901
BssT1I	CCWWGG	1 cut(s)	694
Bst2BI	CACGAG	1 cut(s)	901
Bst4CI	ACNGT	2 cut(s)	332, 961
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	120
BstAFI	CTTAAG	1 cut(s)	853
BstDEI	CTNAG	3 cut(s)	39, 372, 929
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	5 cut(s)	148, 304, 534, 682, 687
BstKTI	GATC	3 cut(s)	271, 370, 409
BstMAI	GTCTC	4 cut(s)	69, 103, 704, 840
BstMBI	GATC	3 cut(s)	268, 367, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	436, 737, 746
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	194, 264
BstV2I	GAAGAC	2 cut(s)	121, 232
BsuRI	GGCC	2 cut(s)	283, 808
BtgI	CCRYGG	1 cut(s)	694
BtsCI	GGATG	5 cut(s)	148, 304, 534, 682, 687
BtsIMutI	CAGTG	1 cut(s)	606
CciI	TCATGA	1 cut(s)	484
Cfr13I	GGNCC	2 cut(s)	806, 880
CseI	GACGC	2 cut(s)	109, 755
Csp6I	GTAC	1 cut(s)	948
CviAII	CATG	4 cut(s)	125, 485, 530, 695
CviQI	GTAC	1 cut(s)	948
DdeI	CTNAG	3 cut(s)	39, 372, 929
DpnI	GATC	3 cut(s)	270, 369, 408
DpnII	GATC	3 cut(s)	268, 367, 406
EaeI	YGGCCR	1 cut(s)	281
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	694
Eco31I	GGTCTC	1 cut(s)	704
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	880
EcoO109I	RGGNCCY	1 cut(s)	880
EcoRI	GAATTC	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
Esp3I	CGTCTC	2 cut(s)	69, 103
FaeI	CATG	4 cut(s)	128, 488, 533, 698
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	124, 484, 529, 694
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	183, 253
FokI	GGATG	5 cut(s)	155, 311, 521, 674, 689
Fsp4HI	GCNGC	2 cut(s)	183, 253
FspBI	CTAG	5 cut(s)	617, 627, 774, 884, 970
GluI	GCNGC	2 cut(s)	183, 253
HaeIII	GGCC	2 cut(s)	283, 808
HapII	CCGG	2 cut(s)	117, 272
HgaI	GACGC	2 cut(s)	109, 755
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	128, 488, 533, 698
HinfI	GANTC	5 cut(s)	12, 52, 80, 89, 800
HpaII	CCGG	2 cut(s)	117, 272
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	51, 172, 877
Hpy188III	TCNNGA	7 cut(s)	66, 140, 224, 485, 521, 868, 901
Hpy99I	CGWCG	2 cut(s)	12, 749
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	2 cut(s)	332, 961
HpyCH4IV	ACGT	2 cut(s)	237, 507
HpyCH4V	TGCA	4 cut(s)	177, 320, 430, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	436, 737, 746
HpyF3I	CTNAG	3 cut(s)	39, 372, 929
HpySE526I	ACGT	2 cut(s)	237, 507
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	128, 488, 533, 698
Kzo9I	GATC	3 cut(s)	268, 367, 406
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	767, 858
Lsp1109I	GCAGC	2 cut(s)	194, 264
LweI	GCATC	2 cut(s)	133, 543
MaeI	CTAG	5 cut(s)	617, 627, 774, 884, 970
MaeII	ACGT	2 cut(s)	237, 507
MaeIII	GTNAC	3 cut(s)	650, 776, 784
MalI	GATC	3 cut(s)	270, 369, 408
MboI	GATC	3 cut(s)	268, 367, 406
MboII	GAAGA	6 cut(s)	121, 232, 314, 380, 383, 590
MluCI	AATT	4 cut(s)	340, 593, 762, 810
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	6 cut(s)	95, 103, 519, 784, 871, 908
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	4 cut(s)	276, 600, 714, 854
MspCI	CTTAAG	1 cut(s)	853
MspI	CCGG	2 cut(s)	117, 272
MspR9I	CCNGG	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	740
MwoI	GCNNNNNNNGC	3 cut(s)	436, 737, 746
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	694
NdeII	GATC	3 cut(s)	268, 367, 406
NlaIII	CATG	4 cut(s)	128, 488, 533, 698
NlaIV	GGNNCC	2 cut(s)	334, 769
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	776
PagI	TCATGA	1 cut(s)	484
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	740
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	12, 52, 89, 800
PkrI	GCNGC	2 cut(s)	184, 254
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PpuMI	RGGWCCY	1 cut(s)	880
Psp5II	RGGWCCY	1 cut(s)	880
PspN4I	GGNNCC	2 cut(s)	334, 769
PspPI	GGNCC	2 cut(s)	806, 880
PspPPI	RGGWCCY	1 cut(s)	880
RsaI	GTAC	1 cut(s)	949
RsaNI	GTAC	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	4 cut(s)	276, 600, 714, 854
SatI	GCNGC	2 cut(s)	183, 253
Sau3AI	GATC	3 cut(s)	268, 367, 406
Sau96I	GGNCC	2 cut(s)	806, 880
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	117
SfaNI	GCATC	2 cut(s)	133, 543
SinI	GGWCC	1 cut(s)	880
SmlI	CTYRAG	2 cut(s)	521, 853
SmoI	CTYRAG	2 cut(s)	521, 853
SpeI	ACTAGT	1 cut(s)	773
Sse9I	AATT	4 cut(s)	340, 593, 762, 810
SsiI	CCGC	2 cut(s)	514, 729
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	5 cut(s)	617, 627, 774, 884, 970
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	332, 961
TaiI	ACGT	2 cut(s)	240, 510
TaqI	TCGA	4 cut(s)	67, 87, 420, 744
TasI	AATT	4 cut(s)	340, 593, 762, 810
TfiI	GAWTC	4 cut(s)	12, 52, 89, 800
Tru1I	TTAA	4 cut(s)	276, 600, 714, 854
Tru9I	TTAA	4 cut(s)	276, 600, 714, 854
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	2 cut(s)	182, 252
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	2 cut(s)	315, 501
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	613
Vha464I	CTTAAG	1 cut(s)	853
VpaK11BI	GGWCC	1 cut(s)	880
XapI	RAATTY	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	5 cut(s)	617, 627, 774, 884, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.