AT4G17486

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005420
Physical Location & Seq
Reverse (-)
9749578 .. 9751804
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17486.2

Sequence Viewer

Length: 675 bp
ATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGAGAGGGATGAGAGCAGTGGAGAAGCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCATTTTCCATTCTGGTATTGAGGCTCATAATTTGGAATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGAACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTACCAGCATGTCCCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGGTGACACTTACCATTTGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAGCTAACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTGTAATTGTCTTCTGCCAGAAAGCATTCAGCTTACAGCTGTTAGTGCTCTTCCCGAACGCCTTGAATTCTCCGATGAGGATGAATCAAACTCAGAGGCATCTTCTGTGTCAGATGAAGAAGGATCAGAGCAGCATCTCATAAATGTAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCAGAGAGGAGATCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

224

Amino Acids

25.35

Weight (kDa)

4.87

Isoelectric Point (pI)

52.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 27 - 160 1.1e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 212
AccBSI CCGCTC 1 cut(s) 309
AccII CGCG 1 cut(s) 71
AciI CCGC 2 cut(s) 69, 307
AclWI GGATC 2 cut(s) 592, 661
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 212, 425
AgsI TTSAA 3 cut(s) 36, 330, 527
AjnI CCWGG 2 cut(s) 244, 424
AluBI AGCT 7 cut(s) 21, 27, 194, 325, 406, 493, 500
AluI AGCT 7 cut(s) 21, 27, 194, 325, 406, 493, 500
Alw21I GWGCWC 3 cut(s) 23, 196, 511
AlwI GGATC 2 cut(s) 592, 661
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 403, 592
ApoI RAATTY 1 cut(s) 527
AseI ATTAAT 1 cut(s) 435
Asp700I GAANNNNTTC 1 cut(s) 486
AspA2I CCTAGG 1 cut(s) 233
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 447
AvrII CCTAGG 1 cut(s) 233
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 2 cut(s) 23, 196
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 464
Bbv12I GWGCWC 3 cut(s) 23, 196, 511
BbvI GCAGC 2 cut(s) 415, 604
BccI CCATC 1 cut(s) 423
BciT130I CCWGG 2 cut(s) 246, 426
BciVI GTATCC 1 cut(s) 213
BfaI CTAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 3 cut(s) 69, 404, 593
BlnI CCTAGG 1 cut(s) 233
BlsI GCNGC 3 cut(s) 70, 405, 594
Bme1390I CCNGG 2 cut(s) 246, 426
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 3 cut(s) 9, 231, 457
BmrFI CCNGG 2 cut(s) 246, 426
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 569, 604
BmuI ACTGGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 7
BsaJI CCNNGG 3 cut(s) 233, 245, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 425
Bse118I RCCGGY 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 279, 644
BseBI CCWGG 2 cut(s) 246, 426
BseDI CCNNGG 3 cut(s) 233, 245, 340
BseGI GGATG 3 cut(s) 55, 434, 547
BseLI CCNNNNNNNGG 2 cut(s) 212, 425
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 2 cut(s) 279, 644
BseXI GCAGC 2 cut(s) 415, 604
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 266
BshFI GGCC 1 cut(s) 446
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 266
BsiHKAI GWGCWC 3 cut(s) 23, 196, 511
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 212, 425
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 3 cut(s) 23, 196, 511
Bsp143I GATC 3 cut(s) 100, 584, 666
Bsp19I CCATGG 1 cut(s) 340
BspACI CCGC 2 cut(s) 69, 307
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 566
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 9, 231, 457
BspPI GGATC 2 cut(s) 592, 661
BspQI GCTCTTC 1 cut(s) 516
BspT107I GGYRCC 1 cut(s) 7
BsrBI CCGCTC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 79
BsrI ACTGG 2 cut(s) 279, 644
BssAI RCCGGY 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 233, 245, 340
BssMI GATC 3 cut(s) 100, 584, 666
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 2 cut(s) 233, 340
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 2 cut(s) 246, 426
Bst4CI ACNGT 3 cut(s) 242, 264, 374
Bst6I CTCTTC 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 401, 444
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 340
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 3 cut(s) 55, 434, 547
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 3 cut(s) 103, 587, 669
BstMBI GATC 3 cut(s) 100, 584, 666
BstMCI CGRYCG 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNI CCWGG 2 cut(s) 246, 426
BstNSI RCATGY 1 cut(s) 292
BstSCI CCNGG 2 cut(s) 244, 424
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 415, 604
BstV2I GAAGAC 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 666
BstYI RGATCY 1 cut(s) 666
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 3 cut(s) 55, 434, 547
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 3 cut(s) 64, 384, 651
Cac8I GCNNGC 2 cut(s) 401, 444
CfoI GCGC 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 1 cut(s) 337
CviAII CATG 4 cut(s) 30, 289, 316, 341
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 1 cut(s) 553
DpnI GATC 3 cut(s) 102, 586, 668
DpnII GATC 3 cut(s) 100, 584, 666
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 2 cut(s) 21, 194
Eco130I CCWWGG 2 cut(s) 233, 340
Eco24I GRGCYC 2 cut(s) 23, 196
Eco53kI GAGCTC 2 cut(s) 21, 194
Eco57I CTGAAG 1 cut(s) 408
Eco88I CYCGRG 1 cut(s) 447
EcoICRI GAGCTC 2 cut(s) 21, 194
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 2 cut(s) 244, 424
EcoT14I CCWWGG 2 cut(s) 233, 340
EcoT38I GRGCYC 2 cut(s) 23, 196
ErhI CCWWGG 2 cut(s) 233, 340
FaeI CATG 4 cut(s) 33, 292, 319, 344
FalI AAGNNNNNCTT 2 cut(s) 57, 89
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 29, 288, 315, 340
Fnu4HI GCNGC 3 cut(s) 69, 404, 593
FokI GGATG 3 cut(s) 62, 441, 554
FriOI GRGCYC 2 cut(s) 23, 196
Fsp4HI GCNGC 3 cut(s) 69, 404, 593
FspBI CTAG 1 cut(s) 234
GlaI GCGC 1 cut(s) 72
GluI GCNGC 3 cut(s) 69, 404, 593
HaeIII GGCC 1 cut(s) 446
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 73
Hin1II CATG 4 cut(s) 33, 292, 319, 344
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 1 cut(s) 545
HpaII CCGG 1 cut(s) 80
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 5 cut(s) 301, 535, 556, 574, 589
Hpy188III TCNNGA 3 cut(s) 197, 330, 515
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 2 cut(s) 469, 575
HpyCH4III ACNGT 3 cut(s) 242, 264, 374
HpyCH4V TGCA 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 1 cut(s) 553
Hsp92II CATG 4 cut(s) 33, 292, 319, 344
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 3 cut(s) 100, 584, 666
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 2 cut(s) 415, 604
LweI GCATC 2 cut(s) 569, 604
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 344, 374
MalI GATC 3 cut(s) 102, 586, 668
MbiI CCGCTC 1 cut(s) 309
MboI GATC 3 cut(s) 100, 584, 666
MboII GAAGA 5 cut(s) 401, 464, 503, 555, 590
MflI RGATCY 1 cut(s) 666
MhlI GDGCHC 3 cut(s) 23, 196, 511
MluCI AATT 4 cut(s) 118, 172, 466, 527
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 6 cut(s) 39, 157, 217, 532, 550, 655
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 246, 426
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 246, 426
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 506
NcoI CCATGG 1 cut(s) 340
NdeII GATC 3 cut(s) 100, 584, 666
NlaIII CATG 4 cut(s) 33, 292, 319, 344
NlaIV GGNNCC 3 cut(s) 9, 231, 457
NmuCI GTSAC 1 cut(s) 344
NspI RCATGY 1 cut(s) 292
PciSI GCTCTTC 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 445
PctI GAATGC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 1 cut(s) 545
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 424
PkrI GCNGC 3 cut(s) 70, 405, 594
PshBI ATTAAT 1 cut(s) 435
Psp124BI GAGCTC 2 cut(s) 23, 196
Psp6I CCWGG 2 cut(s) 244, 424
PspGI CCWGG 2 cut(s) 244, 424
PspN4I GGNNCC 3 cut(s) 9, 231, 457
PspPI GGNCC 1 cut(s) 445
PsuI RGATCY 1 cut(s) 666
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SacI GAGCTC 2 cut(s) 23, 196
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 3 cut(s) 69, 404, 593
Sau3AI GATC 3 cut(s) 100, 584, 666
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 2 cut(s) 246, 426
SduI GDGCHC 3 cut(s) 23, 196, 511
SfaNI GCATC 2 cut(s) 569, 604
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 4 cut(s) 118, 172, 466, 527
SsiI CCGC 2 cut(s) 69, 307
SspI AATATT 1 cut(s) 182
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 2 cut(s) 23, 196
StyD4I CCNGG 2 cut(s) 244, 424
StyI CCWWGG 2 cut(s) 233, 340
TaaI ACNGT 3 cut(s) 242, 264, 374
TasI AATT 4 cut(s) 118, 172, 466, 527
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 545
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 3 cut(s) 64, 391, 651
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 2 cut(s) 403, 592
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 241, 558, 591
TspRI CASTG 3 cut(s) 64, 391, 651
Van91I CCANNNNNTGG 1 cut(s) 212
VspI ATTAAT 1 cut(s) 435
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 1 cut(s) 527
XceI RCATGY 1 cut(s) 292
XmaJI CCTAGG 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.