AT5G47310

deSI-like protein At4g17486

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005420
Physical Location & Seq
Forward (+)
19200731 .. 19202972
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47310.1

Sequence Viewer

Length: 738 bp
ATGCGGGTGCTTGGTTTGAGCTCAAGCTTATGCTCTGGTGAGGATAAGGAAGAAGAAGAGATTAATGGAGAAGGCTCTCTCACGCCTGTTTATCTCAACGTCTATGATCTAACTCCTGTCAACAATTATCTCTATTGGTTCGGCCTTGGCATATTTCACTCTGGCATTGAGGCTCATGGTTTCGAATATGGATATGGAGCTCATGAGTATTCGAGCAGTGGGGTATTTGAGGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCACCAGCATGTCTCGCTCTGATTTCCGCTCCTTCATGGAGAAGCTTTCGAGAAAGTATCATGGGGACACATACCATTTGATTGCCAAAAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAGGTAACAGGAAAGCCTATTCCTGGATGGATTAATAGGATGGCTCGAGTTGGTTCGTTCTGTAACTGTATCCTTCCAGAAAGCATACAGCTCTCATCGGTTAATCATCCTGAAGCCCTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCTGTGTCATACGAAACAGATGGAGAAGGATCGGATCATCATCTCATAACAGCACCAAACAGCGATATTGCGTATCTACAGGACAGACCAGTGAGACTTGCCCGTGAGCTCCTCCAAGAACCAACCGATGATACATCTCCGCAGTACTTGTTGAAGCGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

245

Amino Acids

27.41

Weight (kDa)

4.83

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 29 - 163 3e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccBSI CCGCTC 1 cut(s) 315
AciI CCGC 4 cut(s) 4, 313, 713, 730
AclWI GGATC 3 cut(s) 559, 610, 615
AcuI CTGAAG 2 cut(s) 414, 540
AfaI GTAC 1 cut(s) 719
AfiI CCNNNNNNNGG 1 cut(s) 431
AgsI TTSAA 2 cut(s) 236, 727
AjnI CCWGG 2 cut(s) 250, 430
AluBI AGCT 7 cut(s) 21, 27, 200, 246, 331, 499, 682
AluI AGCT 7 cut(s) 21, 27, 200, 246, 331, 499, 682
Alw21I GWGCWC 3 cut(s) 23, 202, 684
Alw26I GTCTC 2 cut(s) 303, 661
AlwI GGATC 3 cut(s) 559, 610, 615
Ama87I CYCGRG 2 cut(s) 453, 527
AoxI GGCC 1 cut(s) 142
AseI ATTAAT 2 cut(s) 63, 441
AspA2I CCTAGG 1 cut(s) 239
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 732
AsuHPI GGTGA 1 cut(s) 50
AsuII TTCGAA 1 cut(s) 183
AvaI CYCGRG 2 cut(s) 453, 527
AvaII GGWCC 1 cut(s) 732
AvrII CCTAGG 1 cut(s) 239
BanII GRGCYC 3 cut(s) 23, 202, 684
Bbv12I GWGCWC 3 cut(s) 23, 202, 684
BccI CCATC 4 cut(s) 429, 442, 542, 587
BciT130I CCWGG 2 cut(s) 252, 432
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 2 cut(s) 303, 661
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 400
BfuI GTATCC 1 cut(s) 488
BlnI CCTAGG 1 cut(s) 239
BmcAI AGTACT 1 cut(s) 719
Bme1390I CCNGG 2 cut(s) 252, 432
Bme18I GGWCC 1 cut(s) 732
BmeT110I CYCGRG 2 cut(s) 453, 527
BmgT120I GGNCC 1 cut(s) 732
BmiI GGNNCC 1 cut(s) 286
BmrFI CCNGG 2 cut(s) 252, 432
BmsI GCATC 1 cut(s) 578
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 7
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 2 cut(s) 145, 239
Bsc4I CCNNNNNNNGG 1 cut(s) 431
Bse1I ACTGG 1 cut(s) 662
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 2 cut(s) 252, 432
BseDI CCNNGG 2 cut(s) 145, 239
BseGI GGATG 3 cut(s) 440, 453, 514
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 431
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 662
BseRI GAGGAG 1 cut(s) 674
BshFI GGCC 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 23, 202, 684
BsiHKCI CYCGRG 2 cut(s) 453, 527
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 431
BsmAI GTCTC 2 cut(s) 303, 661
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 1 cut(s) 144
BsoBI CYCGRG 2 cut(s) 453, 527
Bsp119I TTCGAA 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 23, 202, 684
Bsp143I GATC 4 cut(s) 106, 551, 602, 607
BspACI CCGC 4 cut(s) 4, 313, 713, 730
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 286
BspMI ACCTGC 1 cut(s) 400
BspPI GGATC 3 cut(s) 559, 610, 615
BspT104I TTCGAA 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 662
BssECI CCNNGG 2 cut(s) 145, 239
BssMI GATC 4 cut(s) 106, 551, 602, 607
BssT1I CCWWGG 2 cut(s) 145, 239
Bst2UI CCWGG 2 cut(s) 252, 432
Bst4CI ACNGT 2 cut(s) 380, 476
Bst6I CTCTTC 1 cut(s) 51
BstBI TTCGAA 1 cut(s) 183
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 271
BstF5I GGATG 3 cut(s) 440, 453, 514
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 4 cut(s) 109, 554, 605, 610
BstMAI GTCTC 2 cut(s) 303, 661
BstMBI GATC 4 cut(s) 106, 551, 602, 607
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 2 cut(s) 252, 432
BstNSI RCATGY 1 cut(s) 298
BstSCI CCNGG 2 cut(s) 250, 430
BstSFI CTRYAG 1 cut(s) 650
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 1 cut(s) 144
BtsCI GGATG 3 cut(s) 440, 453, 514
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 3 cut(s) 223, 390, 669
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 1 cut(s) 407
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 732
Csp6I GTAC 1 cut(s) 718
CviAII CATG 5 cut(s) 176, 203, 295, 322, 347
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 1 cut(s) 271
DpnI GATC 4 cut(s) 108, 553, 604, 609
DpnII GATC 4 cut(s) 106, 551, 602, 607
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 3 cut(s) 21, 200, 682
Eco130I CCWWGG 2 cut(s) 145, 239
Eco24I GRGCYC 3 cut(s) 23, 202, 684
Eco47I GGWCC 1 cut(s) 732
Eco53kI GAGCTC 3 cut(s) 21, 200, 682
Eco57I CTGAAG 2 cut(s) 414, 540
Eco88I CYCGRG 2 cut(s) 453, 527
EcoICRI GAGCTC 3 cut(s) 21, 200, 682
EcoRII CCWGG 2 cut(s) 250, 430
EcoT14I CCWWGG 2 cut(s) 145, 239
EcoT38I GRGCYC 3 cut(s) 23, 202, 684
ErhI CCWWGG 2 cut(s) 145, 239
FaeI CATG 5 cut(s) 179, 206, 298, 325, 350
FaqI GGGAC 1 cut(s) 365
FatI CATG 5 cut(s) 175, 202, 294, 321, 346
FokI GGATG 3 cut(s) 447, 460, 501
FriOI GRGCYC 3 cut(s) 23, 202, 684
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 144
HhaI GCGC 1 cut(s) 270
Hin1II CATG 5 cut(s) 179, 206, 298, 325, 350
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 2 cut(s) 25, 329
HinfI GANTC 1 cut(s) 560
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 4 cut(s) 307, 538, 556, 607
Hpy188III TCNNGA 5 cut(s) 203, 336, 485, 518, 735
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 4 cut(s) 65, 328, 491, 593
HpyCH4III ACNGT 2 cut(s) 380, 476
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 409, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 5 cut(s) 179, 206, 298, 325, 350
HspAI GCGC 1 cut(s) 268
Kzo9I GATC 4 cut(s) 106, 551, 602, 607
LmnI GCTCC 4 cut(s) 197, 243, 320, 687
LweI GCATC 1 cut(s) 578
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 3 cut(s) 380, 412, 470
MalI GATC 4 cut(s) 108, 553, 604, 609
MbiI CCGCTC 1 cut(s) 315
MboI GATC 4 cut(s) 106, 551, 602, 607
MboII GAAGA 6 cut(s) 62, 65, 68, 407, 564, 569
MhlI GDGCHC 3 cut(s) 23, 202, 684
MluCI AATT 1 cut(s) 124
MnlI CCTC 5 cut(s) 34, 163, 223, 536, 695
MseI TTAA 3 cut(s) 63, 441, 510
MslI CAYNNNNRTG 1 cut(s) 293
MspR9I CCNGG 2 cut(s) 252, 432
MvaI CCWGG 2 cut(s) 252, 432
MwoI GCNNNNNNNGC 1 cut(s) 300
NdeII GATC 4 cut(s) 106, 551, 602, 607
NlaIII CATG 5 cut(s) 179, 206, 298, 325, 350
NlaIV GGNNCC 1 cut(s) 286
NspI RCATGY 1 cut(s) 298
NspV TTCGAA 1 cut(s) 183
PaeR7I CTCGAG 2 cut(s) 453, 527
PagI TCATGA 1 cut(s) 202
PfeI GAWTC 1 cut(s) 560
PfoI TCCNGGA 1 cut(s) 430
PshBI ATTAAT 2 cut(s) 63, 441
Psp124BI GAGCTC 3 cut(s) 23, 202, 684
Psp6I CCWGG 2 cut(s) 250, 430
PspGI CCWGG 2 cut(s) 250, 430
PspN4I GGNNCC 1 cut(s) 286
PspPI GGNCC 1 cut(s) 732
PspXI VCTCGAGB 2 cut(s) 453, 527
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 3 cut(s) 23, 202, 684
SaqAI TTAA 3 cut(s) 63, 441, 510
Sau3AI GATC 4 cut(s) 106, 551, 602, 607
Sau96I GGNCC 1 cut(s) 732
ScaI AGTACT 1 cut(s) 719
ScrFI CCNGG 2 cut(s) 252, 432
SduI GDGCHC 3 cut(s) 23, 202, 684
SfaNI GCATC 1 cut(s) 578
SfcI CTRYAG 1 cut(s) 650
Sfr274I CTCGAG 2 cut(s) 453, 527
SfuI TTCGAA 1 cut(s) 183
SinI GGWCC 1 cut(s) 732
SlaI CTCGAG 2 cut(s) 453, 527
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 22, 453, 527
SmoI CTYRAG 3 cut(s) 22, 453, 527
Sse9I AATT 1 cut(s) 124
SsiI CCGC 4 cut(s) 4, 313, 713, 730
SspMI CTAG 1 cut(s) 240
SstI GAGCTC 3 cut(s) 23, 202, 684
StyD4I CCNGG 2 cut(s) 250, 430
StyI CCWWGG 2 cut(s) 145, 239
TaaI ACNGT 2 cut(s) 380, 476
TaiI ACGT 1 cut(s) 102
TaqI TCGA 5 cut(s) 183, 212, 335, 454, 528
TasI AATT 1 cut(s) 124
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 1 cut(s) 560
Tru1I TTAA 3 cut(s) 63, 441, 510
Tru9I TTAA 3 cut(s) 63, 441, 510
TscAI CASTG 3 cut(s) 223, 397, 669
TspDTI ATGAA 2 cut(s) 247, 310
TspRI CASTG 3 cut(s) 223, 397, 669
VpaK11BI GGWCC 1 cut(s) 732
VspI ATTAAT 2 cut(s) 63, 441
XceI RCATGY 1 cut(s) 298
XhoI CTCGAG 2 cut(s) 453, 527
XmaJI CCTAGG 1 cut(s) 239
XspI CTAG 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.