Rw7G018600

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005420
Physical Location & Seq
Reverse (-)
20164465 .. 20169412
4948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018600.1

Sequence Viewer

Length: 510 bp
ATGGAGTATGGCTTTGGAGCCCATGAGTATCCTAGCAGTGGAGTTTTTGAGGTCGAACCAAGAAGTTGCCCTGGCTTCATATTCAGAAGGTCTGTCCTGCTGGGCAGCACTGATATGTCTCGTACAGAATTACGCTTATTTATGGAACAGCTTTCTGGAAAGTATCATGGCGATACCTATCATTTAATTGCCAAGAATTGCAACCATTTCACTGATGAAGTCTGTTTGCGGCTAACTGGAAAACCTATCCCTGGATGGGTAAACCGGCTGGCACGAGTAGGTTCTTTCTGTAATTGTCTTCTGCCAGAAAACATTCAATTATCAGCAGTCAGACATCTTCCTGATCATCCACCATATTCTGAAGATGATGATGATGATGGATCAGAGTCAATTGCTTCATCTGGAACAGGAAGTGATGAGGATTCAAATCATCACCTGCTGAATGCACCAATCGGGGATGTAGCTTTCGTGAAGGAAACACCAGTAAGGTTAGCAAGGGAGCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

169

Amino Acids

18.81

Weight (kDa)

5.15

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 1 - 104 2.2e-38 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 3 cut(s) 38, 251, 256
AgsI TTSAA 2 cut(s) 317, 426
AjnI CCWGG 2 cut(s) 70, 250
AluBI AGCT 3 cut(s) 151, 464, 502
AluI AGCT 3 cut(s) 151, 464, 502
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 425
BanII GRGCYC 2 cut(s) 22, 504
BauI CACGAG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 117
BccI CCATC 2 cut(s) 249, 371
BciT130I CCWGG 2 cut(s) 72, 252
BciVI GTATCC 1 cut(s) 39
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 444
BfuI GTATCC 1 cut(s) 39
BisI GCNGC 2 cut(s) 106, 230
BlsI GCNGC 2 cut(s) 107, 231
Bme1390I CCNGG 2 cut(s) 72, 252
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 2 cut(s) 72, 252
BpiI GAAGAC 1 cut(s) 290
BsaBI GATNNNNATC 2 cut(s) 177, 426
BsaJI CCNNGG 2 cut(s) 70, 250
BsaXI ACNNNNNCTCC 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 251, 256
Bse118I RCCGGY 1 cut(s) 264
Bse1I ACTGG 2 cut(s) 241, 482
Bse8I GATNNNNATC 2 cut(s) 177, 426
BseBI CCWGG 2 cut(s) 72, 252
BseDI CCNNGG 2 cut(s) 70, 250
BseGI GGATG 3 cut(s) 260, 346, 463
BseJI GATNNNNATC 2 cut(s) 177, 426
BseLI CCNNNNNNNGG 3 cut(s) 38, 251, 256
BseNI ACTGG 2 cut(s) 241, 482
BseXI GCAGC 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 504
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 38, 251, 256
BsmAI GTCTC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 22, 504
Bsp143I GATC 2 cut(s) 343, 380
BspACI CCGC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 264
BsrI ACTGG 2 cut(s) 241, 482
BssAI RCCGGY 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 70, 250
BssMI GATC 2 cut(s) 343, 380
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 72, 252
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 3 cut(s) 260, 346, 463
BstKTI GATC 2 cut(s) 346, 383
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 343, 380
BstNI CCWGG 2 cut(s) 72, 252
BstSCI CCNGG 2 cut(s) 70, 250
BstV1I GCAGC 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 290
BsuI GTATCC 1 cut(s) 39
BtsCI GGATG 3 cut(s) 260, 346, 463
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 3 cut(s) 43, 108, 210
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 264
Csp6I GTAC 1 cut(s) 123
CviAII CATG 3 cut(s) 23, 167, 505
CviJI RGCY 8 cut(s) 12, 20, 75, 151, 232, 268, 464, 502
CviKI_1 RGCY 8 cut(s) 12, 20, 75, 151, 232, 268, 464, 502
CviQI GTAC 1 cut(s) 123
DpnI GATC 2 cut(s) 345, 382
DpnII GATC 2 cut(s) 343, 380
Ecl136II GAGCTC 1 cut(s) 502
Eco24I GRGCYC 2 cut(s) 22, 504
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 2 cut(s) 70, 250
EcoT38I GRGCYC 2 cut(s) 22, 504
FaeI CATG 3 cut(s) 26, 170, 508
FaiI YATR 8 cut(s) 9, 24, 80, 116, 143, 168, 355, 506
FatI CATG 3 cut(s) 22, 166, 504
FbaI TGATCA 1 cut(s) 343
Fnu4HI GCNGC 2 cut(s) 106, 230
FokI GGATG 3 cut(s) 267, 333, 470
FriOI GRGCYC 2 cut(s) 22, 504
Fsp4HI GCNGC 2 cut(s) 106, 230
FspBI CTAG 1 cut(s) 33
GluI GCNGC 2 cut(s) 106, 230
GsaI CCCAGC 1 cut(s) 104
HapII CCGG 1 cut(s) 265
Hin1II CATG 3 cut(s) 26, 170, 508
HinfI GANTC 2 cut(s) 386, 422
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 86, 332, 361, 385
Hpy188III TCNNGA 4 cut(s) 156, 341, 402, 469
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 2 cut(s) 81, 466
HpyCH4V TGCA 2 cut(s) 201, 446
Hsp92II CATG 3 cut(s) 26, 170, 508
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 343, 380
LmnI GCTCC 2 cut(s) 17, 499
Lsp1109I GCAGC 1 cut(s) 117
MaeI CTAG 1 cut(s) 33
MalI GATC 2 cut(s) 345, 382
MboI GATC 2 cut(s) 343, 380
MboII GAAGA 3 cut(s) 290, 329, 374
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 2 cut(s) 22, 504
MluCI AATT 6 cut(s) 128, 186, 196, 292, 317, 390
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 2 cut(s) 43, 412
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 72, 252
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 2 cut(s) 72, 252
NdeII GATC 2 cut(s) 343, 380
NlaIII CATG 3 cut(s) 26, 170, 508
NlaIV GGNNCC 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 444
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 2 cut(s) 107, 231
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 70, 250
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 2 cut(s) 70, 250
PspN4I GGNNCC 1 cut(s) 19
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 2 cut(s) 106, 230
Sau3AI GATC 2 cut(s) 343, 380
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 2 cut(s) 72, 252
SduI GDGCHC 2 cut(s) 22, 504
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 6 cut(s) 128, 186, 196, 292, 317, 390
SsiI CCGC 1 cut(s) 229
SspMI CTAG 1 cut(s) 33
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 2 cut(s) 70, 250
TaqI TCGA 1 cut(s) 54
TasI AATT 6 cut(s) 128, 186, 196, 292, 317, 390
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 3 cut(s) 43, 115, 217
TseI GCWGC 1 cut(s) 105
TspDTI ATGAA 3 cut(s) 67, 231, 387
TspRI CASTG 3 cut(s) 43, 115, 217
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.