Prupe.5G062400_v2.0.a1

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0005420
Physical Location & Seq
Forward (+)
6803912 .. 6808244
4333 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G062400.1

Sequence Viewer

Length: 699 bp
ATGCGGTTGTTTCCTTTGAGCTCAAGCCCGACCTCAACCTCGACCTCGAGCACAGAGAAGGAGAAGACTGATCGGAAAAAAAATCGCGCCCTTTTGTACCTCAATGTCTACGATCTCACGCCTGTAAATAACTACCTTTACTGGTTTGGATTTGGGATCTTCCACTCCGGCATCGAAGTTCATGGCTTGGAGTACGGATTTGGAGCCCATGAGTATCCTAGCAGTGGGGTTTTTGAGGTGGAACCAAGAAGTTGTCCTGGCTTCATCTTCAGAAGGTCAGTCCTGTTGGGCAGCACTGATATGTCTCGCTCAGAATTGCGGTCATTTATGGAGCACCTTTCTGGAAAGTATCATGGTGATACTTATCATTTAATTGCCAAGAATTGCAACCATTTTACTGATGAGGTCTGTATGCGGCTAACTGGAAAGCCTATACCAGGATGGGTAAATCGGCTGGCCAAAGTAGGTTCTTTCTGTAACTGTCTTCTGCCAGAAAGCATTCAAATAGCAGCAGTGAGACATCTTCCTGACCATCCTGCATATTCTGGTGAGGATGATGATGACGATGGATCAGAATCCATCGCATCATCTGGAACAGAAGGAAGTGAAGAGGGGCCAAATCATCATCTGCTGACTACACCAGCAGGTGATGTAGCTTTCCTGAAGGAAAAACCCGTGAGGTTAGCAAGGGAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

233

Amino Acids

25.84

Weight (kDa)

5.93

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 635
Acc36I ACCTGC 1 cut(s) 635
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 87
AciI CCGC 3 cut(s) 4, 319, 415
AclWI GGATC 2 cut(s) 164, 577
AcoI YGGCCR 1 cut(s) 456
AcuI CTGAAG 2 cut(s) 253, 683
AfaI GTAC 2 cut(s) 98, 194
AfiI CCNNNNNNNGG 2 cut(s) 224, 437
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 2 cut(s) 256, 436
AluBI AGCT 2 cut(s) 21, 656
AluI AGCT 2 cut(s) 21, 656
Alw21I GWGCWC 3 cut(s) 23, 53, 336
Alw26I GTCTC 2 cut(s) 309, 511
AlwI GGATC 2 cut(s) 164, 577
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 456, 614
ApeKI GCWGC 2 cut(s) 291, 509
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 3 cut(s) 368, 560, 659
AvaI CYCGRG 1 cut(s) 46
BalI TGGCCA 1 cut(s) 458
BanII GRGCYC 2 cut(s) 23, 208
BbsI GAAGAC 2 cut(s) 71, 476
Bbv12I GWGCWC 3 cut(s) 23, 53, 336
BbvI GCAGC 2 cut(s) 303, 521
BccI CCATC 4 cut(s) 435, 540, 560, 587
BciT130I CCWGG 2 cut(s) 258, 438
BciVI GTATCC 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 309, 511
BfaI CTAG 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 635
BfuI GTATCC 1 cut(s) 225
BisI GCNGC 3 cut(s) 292, 416, 510
BlsI GCNGC 3 cut(s) 293, 417, 511
Bme1390I CCNGG 2 cut(s) 258, 438
BmeT110I CYCGRG 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 3 cut(s) 205, 243, 615
BmrFI CCNGG 2 cut(s) 258, 438
BmsI GCATC 2 cut(s) 180, 593
BpiI GAAGAC 2 cut(s) 71, 476
BpuEI CTTGAG 1 cut(s) 7
BsaBI GATNNNNATC 2 cut(s) 363, 574
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 437
Bse1I ACTGG 2 cut(s) 146, 427
Bse8I GATNNNNATC 2 cut(s) 363, 574
BseBI CCWGG 2 cut(s) 258, 438
BseGI GGATG 3 cut(s) 446, 532, 559
BseJI GATNNNNATC 2 cut(s) 363, 574
BseLI CCNNNNNNNGG 2 cut(s) 224, 437
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 146, 427
BseXI GCAGC 2 cut(s) 303, 521
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 458, 616
BsiHKAI GWGCWC 3 cut(s) 23, 53, 336
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 224, 437
BsmAI GTCTC 2 cut(s) 309, 511
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 2 cut(s) 458, 616
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 4 cut(s) 23, 53, 208, 336
Bsp143I GATC 4 cut(s) 70, 112, 156, 569
BspACI CCGC 3 cut(s) 4, 319, 415
BspANI GGCC 2 cut(s) 458, 616
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 205, 243, 615
BspMI ACCTGC 1 cut(s) 635
BspPI GGATC 2 cut(s) 164, 577
BsrI ACTGG 2 cut(s) 146, 427
BssMI GATC 4 cut(s) 70, 112, 156, 569
Bst2UI CCWGG 2 cut(s) 258, 438
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 1 cut(s) 603
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 435
BstF5I GGATG 3 cut(s) 446, 532, 559
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 4 cut(s) 73, 115, 159, 572
BstMAI GTCTC 2 cut(s) 309, 511
BstMBI GATC 4 cut(s) 70, 112, 156, 569
BstNI CCWGG 2 cut(s) 258, 438
BstSCI CCNGG 2 cut(s) 256, 436
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 2 cut(s) 303, 521
BstV2I GAAGAC 2 cut(s) 71, 476
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 458, 616
BtgZI GCGATG 1 cut(s) 565
BtsCI GGATG 3 cut(s) 446, 532, 559
BtsI GCAGTG 2 cut(s) 229, 519
BtsIMutI CAGTG 3 cut(s) 229, 294, 519
BveI ACCTGC 1 cut(s) 635
Cac8I GCNNGC 1 cut(s) 456
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 2 cut(s) 97, 193
CviAII CATG 3 cut(s) 182, 209, 353
CviQI GTAC 2 cut(s) 97, 193
DdeI CTNAG 1 cut(s) 310
DpnI GATC 4 cut(s) 72, 114, 158, 571
DpnII GATC 4 cut(s) 70, 112, 156, 569
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 603
EarI CTCTTC 1 cut(s) 603
Ecl136II GAGCTC 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 23, 208
Eco53kI GAGCTC 1 cut(s) 21
Eco57I CTGAAG 2 cut(s) 253, 683
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 21
EcoNI CCTNNNNNAGG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 256, 436
EcoT38I GRGCYC 2 cut(s) 23, 208
FaeI CATG 3 cut(s) 185, 212, 356
FaiI YATR 8 cut(s) 183, 210, 302, 329, 354, 413, 434, 541
FatI CATG 3 cut(s) 181, 208, 352
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 3 cut(s) 292, 416, 510
FokI GGATG 3 cut(s) 453, 519, 566
FriOI GRGCYC 2 cut(s) 23, 208
Fsp4HI GCNGC 3 cut(s) 292, 416, 510
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 88
GluI GCNGC 3 cut(s) 292, 416, 510
HaeIII GGCC 2 cut(s) 458, 616
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 185, 212, 356
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 575
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 368, 560, 659
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 4 cut(s) 75, 272, 313, 574
Hpy188III TCNNGA 4 cut(s) 342, 527, 591, 661
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 4 cut(s) 52, 267, 593, 658
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 2 cut(s) 387, 539
HpyF3I CTNAG 1 cut(s) 310
Hsp92II CATG 3 cut(s) 185, 212, 356
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 4 cut(s) 70, 112, 156, 569
LmnI GCTCC 2 cut(s) 203, 331
Lsp1109I GCAGC 2 cut(s) 303, 521
LweI GCATC 2 cut(s) 180, 593
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 476
MalI GATC 4 cut(s) 72, 114, 158, 571
MboI GATC 4 cut(s) 70, 112, 156, 569
MboII GAAGA 6 cut(s) 76, 151, 259, 476, 515, 620
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 4 cut(s) 23, 53, 208, 336
MlsI TGGCCA 1 cut(s) 458
MluCI AATT 3 cut(s) 314, 372, 382
MluNI TGGCCA 1 cut(s) 458
MnlI CCTC 9 cut(s) 43, 49, 55, 110, 229, 397, 544, 604, 672
Mox20I TGGCCA 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 458
MseI TTAA 2 cut(s) 371, 697
MslI CAYNNNNRTG 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 458
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 258, 438
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 258, 438
MvnI CGCG 1 cut(s) 87
NdeII GATC 4 cut(s) 70, 112, 156, 569
NlaIII CATG 3 cut(s) 185, 212, 356
NlaIV GGNNCC 3 cut(s) 205, 243, 615
PaeR7I CTCGAG 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 635
PctI GAATGC 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 3 cut(s) 293, 417, 511
Psp124BI GAGCTC 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 256, 436
PspGI CCWGG 2 cut(s) 256, 436
PspN4I GGNNCC 3 cut(s) 205, 243, 615
PspPI GGNCC 1 cut(s) 614
PspXI VCTCGAGB 1 cut(s) 46
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 98, 194
RsaNI GTAC 2 cut(s) 97, 193
RseI CAYNNNNRTG 1 cut(s) 299
SacI GAGCTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 371, 697
SatI GCNGC 3 cut(s) 292, 416, 510
Sau3AI GATC 4 cut(s) 70, 112, 156, 569
Sau96I GGNCC 1 cut(s) 614
ScrFI CCNGG 2 cut(s) 258, 438
SduI GDGCHC 4 cut(s) 23, 53, 208, 336
SfaNI GCATC 2 cut(s) 180, 593
Sfr274I CTCGAG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 22, 46
SmoI CTYRAG 2 cut(s) 22, 46
Sse9I AATT 3 cut(s) 314, 372, 382
SsiI CCGC 3 cut(s) 4, 319, 415
SspMI CTAG 1 cut(s) 219
SstI GAGCTC 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 256, 436
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 3 cut(s) 41, 47, 174
TasI AATT 3 cut(s) 314, 372, 382
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 2 cut(s) 371, 697
Tru9I TTAA 2 cut(s) 371, 697
TscAI CASTG 3 cut(s) 229, 301, 519
TseI GCWGC 2 cut(s) 291, 509
TspDTI ATGAA 2 cut(s) 170, 253
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 3 cut(s) 229, 301, 519
XagI CCTNNNNNAGG 1 cut(s) 435
XhoI CTCGAG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.