Rroxscaffold_3G00253000

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005420
Physical Location & Seq
Forward (+)
47084739 .. 47089485
4747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253000.1

Sequence Viewer

Length: 699 bp
ATGCGGTTGTTCCCTTTGAACTCGAGCCCGAGCTCTAGCTCTAGCGTAGAGAAGGAGCAACAGACTGATCGGAAAAGGACTCGCTCCCATTTGTACCTCAATGTCTACGATCTCACTCCTGTAAATAACTATCTTTACTGGTTCGGATTTGGGGTCTTCCACTCTGGCATCGAAGTGCATGGCATGGAGTATGGCTTTGGAGCCCATGAGTATCCTAGCAGTGGAGTTTTTGAGGTCGAACCAAGAAGTTGCCCTGGCTTCATATTCAGAAGGTCTGTCCTGCTGGGCAGCACTGATATGTCTTGTACAGAATTACGCTCATTTATGGAACAGCTTTCTGGAAAGTATCATGGTGATACCTATCATTTAATTGCCAAGAATTGCAACCATTTCACTGATGAAGTCTGTTCGCGGCTAACTGGAAAACCTATCCCTGGATGGGTAAACCGGCTGGCACGAGTAGTTTCAGGTTCTTTCTGTAATTGTCTTCTGCCAGAAAACATTCAATTATCAGCAGTCAGACATCTTCCTGATCATCCGCCATATTCTGAAGATGATGATGATGATGGATCAGAGTCAATTGCTTCATCTGGAACAGGAAGTGATGAGGATTCAAATCATCACCTGCTGAATGCACCAATCGGGGATGTAGCTTTCGTGAAGGAAACACCAGTAAGGTTAGCAAGGGAGCTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

5.5

Isoelectric Point (pI)

55.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 31 - 167 1.3e-52 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 633
Acc36I ACCTGC 1 cut(s) 633
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 412
AciI CCGC 3 cut(s) 4, 412, 539
AclWI GGATC 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 570
AfaI GTAC 2 cut(s) 95, 307
AfiI CCNNNNNNNGG 3 cut(s) 221, 434, 439
AgsI TTSAA 3 cut(s) 19, 506, 615
AjnI CCWGG 2 cut(s) 253, 433
AluBI AGCT 5 cut(s) 33, 39, 334, 653, 691
AluI AGCT 5 cut(s) 33, 39, 334, 653, 691
Alw21I GWGCWC 2 cut(s) 35, 693
AlwI GGATC 1 cut(s) 577
Ama87I CYCGRG 2 cut(s) 22, 28
ApeKI GCWGC 1 cut(s) 288
Asp700I GAANNNNTTC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 365, 614
AvaI CYCGRG 2 cut(s) 22, 28
BanII GRGCYC 4 cut(s) 29, 35, 205, 693
BauI CACGAG 1 cut(s) 456
BbsI GAAGAC 2 cut(s) 148, 479
Bbv12I GWGCWC 2 cut(s) 35, 693
BbvI GCAGC 1 cut(s) 300
BccI CCATC 2 cut(s) 432, 560
BciT130I CCWGG 2 cut(s) 255, 435
BciVI GTATCC 1 cut(s) 222
BclI TGATCA 1 cut(s) 532
BfaI CTAG 3 cut(s) 36, 42, 216
BfuAI ACCTGC 1 cut(s) 633
BfuI GTATCC 1 cut(s) 222
BisI GCNGC 2 cut(s) 289, 413
BlsI GCNGC 2 cut(s) 290, 414
Bme1390I CCNGG 2 cut(s) 255, 435
BmeT110I CYCGRG 2 cut(s) 22, 28
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 255, 435
BmsI GCATC 1 cut(s) 177
BpiI GAAGAC 2 cut(s) 148, 479
BsaBI GATNNNNATC 2 cut(s) 360, 615
BsaJI CCNNGG 2 cut(s) 253, 433
BsaXI ACNNNNNCTCC 1 cut(s) 680
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 434, 439
Bse118I RCCGGY 1 cut(s) 447
Bse1I ACTGG 3 cut(s) 143, 424, 671
Bse8I GATNNNNATC 2 cut(s) 360, 615
BseBI CCWGG 2 cut(s) 255, 435
BseDI CCNNGG 2 cut(s) 253, 433
BseGI GGATG 3 cut(s) 443, 535, 652
BseJI GATNNNNATC 2 cut(s) 360, 615
BseLI CCNNNNNNNGG 3 cut(s) 221, 434, 439
BseNI ACTGG 3 cut(s) 143, 424, 671
BseXI GCAGC 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 283
Bsh1236I CGCG 1 cut(s) 412
BsiHKAI GWGCWC 2 cut(s) 35, 693
BsiHKCI CYCGRG 2 cut(s) 22, 28
BsiSI CCGG 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 221, 434, 439
BsmI GAATGC 1 cut(s) 637
BsoBI CYCGRG 2 cut(s) 22, 28
Bsp1286I GDGCHC 4 cut(s) 29, 35, 205, 693
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 4 cut(s) 67, 109, 532, 569
BspACI CCGC 3 cut(s) 4, 412, 539
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 633
BspPI GGATC 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 447
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 3 cut(s) 143, 424, 671
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 2 cut(s) 253, 433
BssMI GATC 4 cut(s) 67, 109, 532, 569
BssSI CACGAG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 255, 435
BstAUI TGTACA 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 453
BstF5I GGATG 3 cut(s) 443, 535, 652
BstFNI CGCG 1 cut(s) 412
BstKTI GATC 4 cut(s) 70, 112, 535, 572
BstMBI GATC 4 cut(s) 67, 109, 532, 569
BstNI CCWGG 2 cut(s) 255, 435
BstSCI CCNGG 2 cut(s) 253, 433
BstUI CGCG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 2 cut(s) 148, 479
BsuI GTATCC 1 cut(s) 222
BtsCI GGATG 3 cut(s) 443, 535, 652
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 3 cut(s) 226, 291, 393
BveI ACCTGC 1 cut(s) 633
Cac8I GCNNGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 447
Csp6I GTAC 2 cut(s) 94, 306
CviAII CATG 5 cut(s) 179, 184, 206, 350, 694
CviQI GTAC 2 cut(s) 94, 306
DpnI GATC 4 cut(s) 69, 111, 534, 571
DpnII GATC 4 cut(s) 67, 109, 532, 569
EciI GGCGGA 1 cut(s) 528
Ecl136II GAGCTC 2 cut(s) 33, 691
Eco24I GRGCYC 4 cut(s) 29, 35, 205, 693
Eco53kI GAGCTC 2 cut(s) 33, 691
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 2 cut(s) 22, 28
EcoICRI GAGCTC 2 cut(s) 33, 691
EcoRII CCWGG 2 cut(s) 253, 433
EcoT38I GRGCYC 4 cut(s) 29, 35, 205, 693
FaeI CATG 5 cut(s) 182, 187, 209, 353, 697
FatI CATG 5 cut(s) 178, 183, 205, 349, 693
FbaI TGATCA 1 cut(s) 532
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 2 cut(s) 289, 413
FokI GGATG 3 cut(s) 450, 522, 659
FriOI GRGCYC 4 cut(s) 29, 35, 205, 693
Fsp4HI GCNGC 2 cut(s) 289, 413
FspBI CTAG 3 cut(s) 36, 42, 216
GluI GCNGC 2 cut(s) 289, 413
GsaI CCCAGC 1 cut(s) 287
HapII CCGG 1 cut(s) 448
Hin1II CATG 5 cut(s) 182, 187, 209, 353, 697
HinfI GANTC 3 cut(s) 79, 575, 611
HpaII CCGG 1 cut(s) 448
HphI GGTGA 2 cut(s) 365, 614
Hpy166II GTNNAC 2 cut(s) 106, 445
Hpy188I TCNGA 6 cut(s) 72, 146, 269, 521, 550, 574
Hpy188III TCNNGA 4 cut(s) 339, 530, 591, 658
Hpy8I GTNNAC 2 cut(s) 106, 445
HpyAV CCTTC 3 cut(s) 46, 264, 655
HpyCH4V TGCA 3 cut(s) 178, 384, 635
Hsp92II CATG 5 cut(s) 182, 187, 209, 353, 697
Ksp22I TGATCA 1 cut(s) 532
Kzo9I GATC 4 cut(s) 67, 109, 532, 569
LmnI GCTCC 4 cut(s) 55, 89, 200, 688
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 1 cut(s) 177
MaeI CTAG 3 cut(s) 36, 42, 216
MalI GATC 4 cut(s) 69, 111, 534, 571
MboI GATC 4 cut(s) 67, 109, 532, 569
MboII GAAGA 4 cut(s) 148, 479, 518, 563
MfeI CAATTG 1 cut(s) 579
MhlI GDGCHC 4 cut(s) 29, 35, 205, 693
MluCI AATT 6 cut(s) 311, 369, 379, 481, 506, 579
MlyI GAGTC 2 cut(s) 73, 584
MnlI CCTC 3 cut(s) 107, 226, 601
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 1 cut(s) 368
MslI CAYNNNNRTG 2 cut(s) 173, 296
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 2 cut(s) 255, 435
MunI CAATTG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 2 cut(s) 255, 435
MvnI CGCG 1 cut(s) 412
NdeII GATC 4 cut(s) 67, 109, 532, 569
NlaIII CATG 5 cut(s) 182, 187, 209, 353, 697
NlaIV GGNNCC 1 cut(s) 202
PaeR7I CTCGAG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 633
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 2 cut(s) 290, 414
PleI GAGTC 2 cut(s) 73, 583
PpsI GAGTC 2 cut(s) 73, 583
Psp124BI GAGCTC 2 cut(s) 35, 693
Psp6I CCWGG 2 cut(s) 253, 433
PspFI CCCAGC 1 cut(s) 283
PspGI CCWGG 2 cut(s) 253, 433
PspN4I GGNNCC 1 cut(s) 202
PspXI VCTCGAGB 1 cut(s) 22
RsaI GTAC 2 cut(s) 95, 307
RsaNI GTAC 2 cut(s) 94, 306
RseI CAYNNNNRTG 2 cut(s) 173, 296
SacI GAGCTC 2 cut(s) 35, 693
SaqAI TTAA 1 cut(s) 368
SatI GCNGC 2 cut(s) 289, 413
Sau3AI GATC 4 cut(s) 67, 109, 532, 569
SchI GAGTC 2 cut(s) 73, 584
ScrFI CCNGG 2 cut(s) 255, 435
SduI GDGCHC 4 cut(s) 29, 35, 205, 693
SfaNI GCATC 1 cut(s) 177
Sfr274I CTCGAG 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 22
SmiMI CAYNNNNRTG 2 cut(s) 173, 296
SmlI CTYRAG 1 cut(s) 22
SmoI CTYRAG 1 cut(s) 22
Sse9I AATT 6 cut(s) 311, 369, 379, 481, 506, 579
SsiI CCGC 3 cut(s) 4, 412, 539
SspMI CTAG 3 cut(s) 36, 42, 216
SstI GAGCTC 2 cut(s) 35, 693
StyD4I CCNGG 2 cut(s) 253, 433
TaqI TCGA 3 cut(s) 23, 171, 237
TasI AATT 6 cut(s) 311, 369, 379, 481, 506, 579
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 415
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 1 cut(s) 368
Tru9I TTAA 1 cut(s) 368
TscAI CASTG 3 cut(s) 226, 298, 400
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 250, 414, 576
TspRI CASTG 3 cut(s) 226, 298, 400
XhoI CTCGAG 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 3 cut(s) 36, 42, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.